Wall clock time and date at job start Mon Mar 30 2020 07:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47432 * 338.07965 * 3 2 1 5 5 H 1.09000 * 109.49815 * 54.92319 * 4 3 2 6 6 C 1.53118 * 109.50383 * 294.80459 * 4 3 2 7 7 C 1.53113 * 109.15991 * 182.40109 * 6 4 3 8 8 C 1.53044 * 109.27740 * 57.65751 * 7 6 4 9 9 N 1.46846 * 109.51890 * 300.81622 * 8 7 6 10 10 C 1.46907 * 110.99568 * 185.83645 * 9 8 7 11 11 C 1.53002 * 109.46767 * 160.01306 * 10 9 8 12 12 H 1.09004 * 109.46880 * 55.35353 * 11 10 9 13 13 C 1.47194 * 109.47379 * 295.35125 * 11 10 9 14 14 N 7.32285 * 129.72836 * 13.00060 * 2 1 3 15 15 C 1.53001 * 109.47026 * 175.34741 * 11 10 9 16 16 C 1.50703 * 109.46953 * 185.00380 * 15 11 10 17 17 H 1.07991 * 120.00347 * 0.02562 * 16 15 11 18 18 C 1.37876 * 119.99431 * 180.02562 * 16 15 11 19 19 N 1.31510 * 120.00458 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99606 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47203 * 89.99926 * 20 18 16 22 22 H 1.48503 * 109.47301 * 209.99733 * 20 18 16 23 23 H 1.48497 * 109.47444 * 330.00090 * 20 18 16 24 24 C 1.46851 * 111.19689 * 61.74850 * 9 8 7 25 25 H 4.44651 * 5.63440 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47337 * 98.08365 * 3 2 1 27 27 H 1.09004 * 109.47010 * 218.08434 * 3 2 1 28 28 H 1.08994 * 109.52171 * 302.30754 * 6 4 3 29 29 H 1.09004 * 109.52348 * 62.49961 * 6 4 3 30 30 H 1.09001 * 109.51017 * 297.71640 * 7 6 4 31 31 H 1.08998 * 109.54002 * 177.61488 * 7 6 4 32 32 H 1.08999 * 109.46022 * 180.80741 * 8 7 6 33 33 H 1.08993 * 109.46311 * 60.83610 * 8 7 6 34 34 H 1.08996 * 109.47144 * 280.01371 * 10 9 8 35 35 H 1.09000 * 109.47037 * 40.01776 * 10 9 8 36 36 H 1.09001 * 109.47111 * 305.00116 * 15 11 10 37 37 H 1.08997 * 109.46884 * 64.99930 * 15 11 10 38 38 H 0.97003 * 120.00096 * 180.02562 * 19 18 16 39 39 H 1.09004 * 109.46121 * 178.23958 * 24 9 8 40 40 H 1.09000 * 109.45720 * 58.26267 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.3373 0.5385 5 1 2.7216 -2.1522 -0.0400 6 6 2.7563 -1.4828 2.0092 7 6 3.3223 -2.7960 2.5566 8 6 4.8427 -2.8024 2.3825 9 7 5.1742 -2.6614 0.9589 10 6 6.6198 -2.8021 0.7386 11 6 6.8807 -3.1477 -0.7289 12 1 6.4200 -2.3936 -1.3672 13 6 6.3029 -4.4670 -1.0326 14 7 5.8543 -5.4875 -1.2670 15 6 8.3888 -3.1801 -0.9849 16 6 8.6444 -3.3988 -2.4539 17 1 7.8143 -3.5036 -3.1367 18 6 9.9381 -3.4649 -2.9260 19 7 10.9490 -3.3367 -2.0947 20 14 10.2549 -3.7366 -4.7468 21 1 10.3340 -2.4239 -5.4368 22 1 11.5363 -4.4662 -4.9228 23 1 9.1465 -4.5355 -5.3284 24 6 4.6819 -1.3859 0.4229 25 1 -1.0498 -0.0005 0.0000 26 1 3.0093 0.1453 -1.0174 27 1 3.0090 0.8097 0.6339 28 1 3.1587 -0.6464 2.5807 29 1 1.6694 -1.4922 2.0917 30 1 2.8899 -3.6344 2.0104 31 1 3.0768 -2.8857 3.6148 32 1 5.2473 -3.7422 2.7582 33 1 5.2756 -1.9720 2.9402 34 1 7.1178 -1.8644 0.9851 35 1 7.0084 -3.5980 1.3739 36 1 8.8302 -2.2324 -0.6764 37 1 8.8369 -3.9928 -0.4131 38 1 11.8591 -3.3829 -2.4270 39 1 4.9697 -1.2970 -0.6247 40 1 5.1156 -0.5622 0.9899 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000829773372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:49 Heat of formation + Delta-G solvation = 54.378335 kcal Electronic energy + Delta-G solvation = -18985.752150 eV Core-core repulsion = 16186.892684 eV Total energy + Delta-G solvation = -2798.859466 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.41045 -36.64165 -35.06301 -33.75099 -32.81795 -31.47704 -30.98549 -27.12554 -26.86768 -24.47679 -22.45942 -21.82679 -21.60544 -19.72942 -18.16610 -16.67130 -16.50819 -15.74721 -15.04498 -14.73360 -14.62040 -14.45298 -14.27931 -13.49570 -13.29035 -13.02736 -12.92563 -12.60165 -12.28449 -12.25469 -11.87953 -11.43892 -11.24516 -11.18465 -11.06015 -10.87058 -10.71801 -10.64290 -10.59906 -10.42005 -10.19884 -10.16208 -9.98275 -9.50298 -9.20569 -8.44829 -8.16143 -6.08817 -4.11755 2.69669 2.73850 3.29763 3.36822 3.41829 3.75540 3.85944 3.96092 4.27849 4.42423 4.68134 4.76747 4.85661 4.94169 5.14854 5.29436 5.31645 5.38177 5.43429 5.50089 5.55932 5.59892 5.66478 5.75440 5.81512 5.87114 5.92266 5.99711 6.04127 6.09477 6.18073 6.36573 6.40170 6.53284 7.21243 7.23224 7.43715 7.51290 7.54543 7.86723 8.24552 8.63537 8.93188 9.53740 11.02097 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024124 B = 0.004303 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.370179 B = 6504.814434 C = 6985.191713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.173 4.173 3 C -0.012 4.012 4 C -0.080 4.080 5 H 0.082 0.918 6 C -0.113 4.113 7 C -0.117 4.117 8 C 0.057 3.943 9 N -0.542 5.542 10 C 0.063 3.937 11 C 0.013 3.987 12 H 0.099 0.901 13 C 0.258 3.742 14 N -0.483 5.483 15 C 0.031 3.969 16 C -0.525 4.525 17 H 0.057 0.943 18 C 0.062 3.938 19 N -0.892 5.892 20 Si 0.891 3.109 21 H -0.279 1.279 22 H -0.286 1.286 23 H -0.273 1.273 24 C 0.058 3.942 25 H 0.214 0.786 26 H 0.091 0.909 27 H 0.086 0.914 28 H 0.059 0.941 29 H 0.061 0.939 30 H 0.069 0.931 31 H 0.063 0.937 32 H 0.073 0.927 33 H 0.033 0.967 34 H 0.056 0.944 35 H 0.078 0.922 36 H 0.037 0.963 37 H 0.025 0.975 38 H 0.262 0.738 39 H 0.083 0.917 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.790 8.507 9.510 19.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.173 4.173 3 C -0.049 4.049 4 C -0.099 4.099 5 H 0.101 0.899 6 C -0.151 4.151 7 C -0.154 4.154 8 C -0.071 4.071 9 N -0.266 5.266 10 C -0.066 4.066 11 C -0.009 4.009 12 H 0.117 0.883 13 C -0.059 4.059 14 N -0.160 5.160 15 C -0.008 4.008 16 C -0.563 4.563 17 H 0.075 0.925 18 C -0.140 4.140 19 N -0.531 5.531 20 Si 0.718 3.282 21 H -0.205 1.205 22 H -0.212 1.212 23 H -0.198 1.198 24 C -0.070 4.070 25 H 0.231 0.769 26 H 0.109 0.891 27 H 0.104 0.896 28 H 0.078 0.922 29 H 0.080 0.920 30 H 0.088 0.912 31 H 0.082 0.918 32 H 0.092 0.908 33 H 0.051 0.949 34 H 0.074 0.926 35 H 0.096 0.904 36 H 0.055 0.945 37 H 0.044 0.956 38 H 0.072 0.928 39 H 0.101 0.899 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges -15.492 6.578 8.923 19.049 hybrid contribution 0.674 0.879 -0.539 1.232 sum -14.817 7.457 8.384 18.586 Atomic orbital electron populations 1.24833 0.95931 1.01344 1.01914 1.23112 0.94516 0.99959 0.99704 1.18819 0.84723 0.98503 1.02825 1.21160 0.95450 0.96528 0.96717 0.89913 1.21633 1.00468 0.97663 0.95341 1.21576 0.95247 0.98197 1.00416 1.22075 0.95915 1.00818 0.88318 1.61881 1.15046 1.33596 1.16057 1.22228 0.86373 1.01419 0.96544 1.19214 0.99996 0.86714 0.94984 0.88325 1.28984 0.90937 0.94429 0.91558 1.81109 1.12047 1.12552 1.10270 1.19175 0.85174 0.98760 0.97652 1.21145 0.92197 1.50157 0.92829 0.92500 1.24947 0.96223 0.94975 0.97806 1.69936 0.98755 1.49930 1.34469 0.86604 0.77779 0.78360 0.85423 1.20482 1.21165 1.19829 1.22172 0.93780 0.89989 1.01065 0.76927 0.89091 0.89596 0.92247 0.92020 0.91190 0.91792 0.90834 0.94917 0.92603 0.90376 0.94499 0.95614 0.92820 0.89859 0.94455 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -2.15 19.25 29.55 0.57 -1.58 16 2 C -0.17 -1.83 12.37 -37.12 -0.46 -2.28 16 3 C -0.01 -0.11 5.19 -29.52 -0.15 -0.26 16 4 C -0.08 -0.83 2.33 -90.54 -0.21 -1.05 16 5 H 0.08 1.02 8.14 -51.93 -0.42 0.60 16 6 C -0.11 -1.11 5.05 -26.61 -0.13 -1.24 16 7 C -0.12 -1.20 6.09 -26.65 -0.16 -1.36 16 8 C 0.06 0.64 5.43 -3.83 -0.02 0.62 16 9 N -0.54 -7.18 4.28 -234.66 -1.00 -8.19 16 10 C 0.06 0.93 4.37 -3.82 -0.02 0.91 16 11 C 0.01 0.24 2.27 -93.41 -0.21 0.03 16 12 H 0.10 1.70 6.71 -51.93 -0.35 1.35 16 13 C 0.26 5.44 13.67 -20.66 -0.28 5.15 16 14 N -0.48 -11.11 18.56 42.28 0.78 -10.32 16 15 C 0.03 0.71 4.42 -27.88 -0.12 0.59 16 16 C -0.53 -13.95 8.60 -34.44 -0.30 -14.25 16 17 H 0.06 1.51 7.59 -52.49 -0.40 1.11 16 18 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 19 N -0.89 -25.48 13.29 55.43 0.74 -24.74 16 20 Si 0.89 21.29 29.54 -169.99 -5.02 16.27 16 21 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 22 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 23 H -0.27 -6.58 7.11 56.52 0.40 -6.18 16 24 C 0.06 0.66 4.57 -3.83 -0.02 0.64 16 25 H 0.21 1.35 7.80 -54.10 -0.42 0.93 16 26 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.09 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.61 7.48 -51.93 -0.39 0.22 16 30 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.07 0.85 7.93 -51.93 -0.41 0.44 16 33 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.75 8.00 -51.93 -0.42 0.34 16 35 H 0.08 1.16 7.79 -51.93 -0.40 0.76 16 36 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 39 H 0.08 0.98 6.65 -51.93 -0.35 0.64 16 40 H 0.04 0.39 8.14 -51.93 -0.42 -0.03 16 LS Contribution 335.72 15.07 5.06 5.06 Total: -1.00 -30.51 335.72 -7.56 -38.06 By element: Atomic # 1 Polarization: 2.80 SS G_CDS: -6.50 Total: -3.69 kcal Atomic # 6 Polarization: -10.84 SS G_CDS: -1.62 Total: -12.45 kcal Atomic # 7 Polarization: -43.76 SS G_CDS: 0.52 Total: -43.25 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.02 Total: 16.27 kcal Total LS contribution 5.06 Total: 5.06 kcal Total: -30.51 -7.56 -38.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829773372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.442 kcal (2) G-P(sol) polarization free energy of solvation -30.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.378 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds