Wall clock time and date at job start Mon Mar 30 2020 07:17:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17395 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47432 * 338.07965 * 3 2 1 5 5 H 1.09000 * 109.49815 * 54.92319 * 4 3 2 6 6 C 1.53118 * 109.50383 * 294.80459 * 4 3 2 7 7 C 1.53113 * 109.15991 * 182.40109 * 6 4 3 8 8 C 1.53044 * 109.27740 * 57.65751 * 7 6 4 9 9 N 1.46846 * 109.51890 * 300.81622 * 8 7 6 10 10 C 1.46907 * 110.99568 * 185.83645 * 9 8 7 11 11 C 1.53002 * 109.46767 * 160.01306 * 10 9 8 12 12 H 1.09004 * 109.46880 * 55.35353 * 11 10 9 13 13 C 1.47194 * 109.47379 * 295.35125 * 11 10 9 14 14 N 7.32285 * 129.72836 * 13.00060 * 2 1 3 15 15 C 1.53001 * 109.47026 * 175.34741 * 11 10 9 16 16 C 1.50703 * 109.46953 * 185.00380 * 15 11 10 17 17 H 1.07991 * 120.00347 * 0.02562 * 16 15 11 18 18 C 1.37876 * 119.99431 * 180.02562 * 16 15 11 19 19 N 1.31510 * 120.00458 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99606 * 179.97438 * 18 16 15 21 21 H 1.48508 * 109.47203 * 89.99926 * 20 18 16 22 22 H 1.48503 * 109.47301 * 209.99733 * 20 18 16 23 23 H 1.48497 * 109.47444 * 330.00090 * 20 18 16 24 24 C 1.46851 * 111.19689 * 61.74850 * 9 8 7 25 25 H 4.44651 * 5.63440 * 180.02562 * 4 1 2 26 26 H 1.08996 * 109.47337 * 98.08365 * 3 2 1 27 27 H 1.09004 * 109.47010 * 218.08434 * 3 2 1 28 28 H 1.08994 * 109.52171 * 302.30754 * 6 4 3 29 29 H 1.09004 * 109.52348 * 62.49961 * 6 4 3 30 30 H 1.09001 * 109.51017 * 297.71640 * 7 6 4 31 31 H 1.08998 * 109.54002 * 177.61488 * 7 6 4 32 32 H 1.08999 * 109.46022 * 180.80741 * 8 7 6 33 33 H 1.08993 * 109.46311 * 60.83610 * 8 7 6 34 34 H 1.08996 * 109.47144 * 280.01371 * 10 9 8 35 35 H 1.09000 * 109.47037 * 40.01776 * 10 9 8 36 36 H 1.09001 * 109.47111 * 305.00116 * 15 11 10 37 37 H 1.08997 * 109.46884 * 64.99930 * 15 11 10 38 38 H 0.97003 * 120.00096 * 180.02562 * 19 18 16 39 39 H 1.09004 * 109.46121 * 178.23958 * 24 9 8 40 40 H 1.09000 * 109.45720 * 58.26267 * 24 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1739 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1567 -1.3373 0.5385 5 1 2.7216 -2.1522 -0.0400 6 6 2.7563 -1.4828 2.0092 7 6 3.3223 -2.7960 2.5566 8 6 4.8427 -2.8024 2.3825 9 7 5.1742 -2.6614 0.9589 10 6 6.6198 -2.8021 0.7386 11 6 6.8807 -3.1477 -0.7289 12 1 6.4200 -2.3936 -1.3672 13 6 6.3029 -4.4670 -1.0326 14 7 5.8543 -5.4875 -1.2670 15 6 8.3888 -3.1801 -0.9849 16 6 8.6444 -3.3988 -2.4539 17 1 7.8143 -3.5036 -3.1367 18 6 9.9381 -3.4649 -2.9260 19 7 10.9490 -3.3367 -2.0947 20 14 10.2549 -3.7366 -4.7468 21 1 10.3340 -2.4239 -5.4368 22 1 11.5363 -4.4662 -4.9228 23 1 9.1465 -4.5355 -5.3284 24 6 4.6819 -1.3859 0.4229 25 1 -1.0498 -0.0005 0.0000 26 1 3.0093 0.1453 -1.0174 27 1 3.0090 0.8097 0.6339 28 1 3.1587 -0.6464 2.5807 29 1 1.6694 -1.4922 2.0917 30 1 2.8899 -3.6344 2.0104 31 1 3.0768 -2.8857 3.6148 32 1 5.2473 -3.7422 2.7582 33 1 5.2756 -1.9720 2.9402 34 1 7.1178 -1.8644 0.9851 35 1 7.0084 -3.5980 1.3739 36 1 8.8302 -2.2324 -0.6764 37 1 8.8369 -3.9928 -0.4131 38 1 11.8591 -3.3829 -2.4270 39 1 4.9697 -1.2970 -0.6247 40 1 5.1156 -0.5622 0.9899 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000829773372.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:17:49 Heat of formation + Delta-G solvation = 37.951714 kcal Electronic energy + Delta-G solvation = -18986.464462 eV Core-core repulsion = 16186.892684 eV Total energy + Delta-G solvation = -2799.571778 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.37027 -38.09916 -36.20187 -35.42187 -34.21086 -32.58108 -32.15362 -28.61880 -27.80256 -25.80815 -23.83638 -23.07741 -22.81176 -20.58024 -18.90311 -18.47727 -18.12338 -16.93209 -16.42089 -15.98172 -15.63483 -15.49755 -15.26599 -14.85090 -14.39083 -14.28523 -14.07175 -13.92137 -13.66297 -13.58338 -13.20368 -13.05308 -12.93547 -12.64448 -12.45040 -12.36955 -12.04863 -11.87480 -11.70969 -11.52893 -11.41869 -11.30727 -11.01883 -10.89006 -10.78178 -10.53241 -9.15215 -8.18148 -6.26050 1.40773 1.43058 1.52184 1.94130 1.99644 2.07582 2.15435 2.42617 2.95965 3.17415 3.38378 3.57031 3.87573 3.93708 4.02494 4.23149 4.37361 4.39945 4.51301 4.57103 4.67293 4.69118 4.74149 4.80010 4.89191 4.95651 4.98922 5.01169 5.07044 5.17296 5.25294 5.26178 5.38457 5.48816 5.54175 5.64328 5.81038 6.13448 6.26321 6.29060 6.78665 6.85092 6.96142 7.42480 8.92705 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.024124 B = 0.004303 C = 0.004008 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1160.370179 B = 6504.814434 C = 6985.191713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.205 4.205 3 C -0.009 4.009 4 C -0.073 4.073 5 H 0.058 0.942 6 C -0.108 4.108 7 C -0.113 4.113 8 C 0.056 3.944 9 N -0.558 5.558 10 C 0.074 3.926 11 C 0.023 3.977 12 H 0.115 0.885 13 C 0.268 3.732 14 N -0.519 5.519 15 C 0.038 3.962 16 C -0.538 4.538 17 H 0.052 0.948 18 C 0.013 3.987 19 N -0.923 5.923 20 Si 0.947 3.053 21 H -0.266 1.266 22 H -0.285 1.285 23 H -0.277 1.277 24 C 0.056 3.944 25 H 0.239 0.761 26 H 0.094 0.906 27 H 0.102 0.898 28 H 0.073 0.927 29 H 0.060 0.940 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.068 0.932 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.074 0.926 36 H 0.037 0.963 37 H 0.001 0.999 38 H 0.264 0.736 39 H 0.077 0.923 40 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.655 9.910 9.908 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.239 4.239 2 C -0.205 4.205 3 C -0.046 4.046 4 C -0.092 4.092 5 H 0.076 0.924 6 C -0.146 4.146 7 C -0.151 4.151 8 C -0.071 4.071 9 N -0.283 5.283 10 C -0.055 4.055 11 C 0.001 3.999 12 H 0.133 0.867 13 C -0.048 4.048 14 N -0.197 5.197 15 C 0.000 4.000 16 C -0.576 4.576 17 H 0.070 0.930 18 C -0.186 4.186 19 N -0.563 5.563 20 Si 0.773 3.227 21 H -0.191 1.191 22 H -0.210 1.210 23 H -0.202 1.202 24 C -0.071 4.071 25 H 0.255 0.745 26 H 0.112 0.888 27 H 0.120 0.880 28 H 0.091 0.909 29 H 0.078 0.922 30 H 0.069 0.931 31 H 0.100 0.900 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.092 0.908 35 H 0.093 0.907 36 H 0.055 0.945 37 H 0.019 0.981 38 H 0.073 0.927 39 H 0.096 0.904 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -16.372 7.992 9.323 20.465 hybrid contribution 0.893 0.433 -0.650 1.186 sum -15.479 8.425 8.673 19.641 Atomic orbital electron populations 1.25606 0.96900 1.00368 1.01005 1.23572 0.95373 1.00906 1.00633 1.18820 0.84313 0.98139 1.03305 1.21050 0.94686 0.96445 0.97003 0.92379 1.21593 1.00382 0.97740 0.94849 1.21553 0.94373 0.97825 1.01312 1.22115 0.96630 1.01161 0.87192 1.61800 1.13821 1.35048 1.17604 1.22036 0.87875 1.02127 0.93490 1.19194 0.96798 0.85766 0.98112 0.86728 1.29525 0.90171 0.94657 0.90430 1.81105 1.13245 1.13682 1.11699 1.18991 0.88096 0.97566 0.95380 1.21547 0.92087 1.49388 0.94625 0.92952 1.25685 0.96304 0.95058 1.01583 1.70026 0.99073 1.51103 1.36092 0.85717 0.77275 0.78659 0.81058 1.19061 1.21027 1.20232 1.22225 0.94326 0.89652 1.00897 0.74468 0.88813 0.88003 0.90878 0.92172 0.93097 0.89977 0.91396 0.93381 0.90759 0.90740 0.94505 0.98102 0.92720 0.90443 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.90 19.25 74.32 1.43 -2.47 16 2 C -0.20 -4.04 12.37 31.13 0.39 -3.65 16 3 C -0.01 -0.15 5.19 28.79 0.15 0.00 16 4 C -0.07 -1.43 2.33 -10.74 -0.02 -1.45 16 5 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 6 C -0.11 -1.89 5.05 30.67 0.15 -1.74 16 7 C -0.11 -2.13 6.09 30.65 0.19 -1.94 16 8 C 0.06 1.18 5.43 86.33 0.47 1.65 16 9 N -0.56 -13.97 4.28 -896.33 -3.83 -17.80 16 10 C 0.07 2.06 4.37 86.30 0.38 2.44 16 11 C 0.02 0.84 2.27 -12.60 -0.03 0.81 16 12 H 0.12 3.80 6.71 -2.39 -0.02 3.79 16 13 C 0.27 11.28 13.67 89.40 1.22 12.51 16 14 N -0.52 -24.04 18.56 20.04 0.37 -23.67 16 15 C 0.04 1.76 4.42 29.85 0.13 1.90 16 16 C -0.54 -28.53 8.60 25.60 0.22 -28.31 16 17 H 0.05 2.77 7.59 -2.92 -0.02 2.74 16 18 C 0.01 0.69 5.46 84.65 0.46 1.15 16 19 N -0.92 -52.81 13.29 21.45 0.28 -52.52 16 20 Si 0.95 43.46 29.54 68.60 2.03 45.48 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 H -0.28 -12.91 7.11 99.48 0.71 -12.21 16 23 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 24 C 0.06 1.18 4.57 86.33 0.39 1.57 16 25 H 0.24 2.48 7.80 -4.43 -0.03 2.45 16 26 H 0.09 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.10 1.38 8.14 -2.38 -0.02 1.36 16 28 H 0.07 1.10 8.14 -2.39 -0.02 1.09 16 29 H 0.06 1.08 7.48 -2.39 -0.02 1.07 16 30 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.07 1.49 7.93 -2.39 -0.02 1.47 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.07 1.83 8.00 -2.39 -0.02 1.81 16 35 H 0.07 2.14 7.79 -2.39 -0.02 2.12 16 36 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 37 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.26 14.34 8.31 -92.71 -0.77 13.57 16 39 H 0.08 1.70 6.65 -2.38 -0.02 1.68 16 40 H 0.05 0.97 8.14 -2.39 -0.02 0.95 16 Total: -1.00 -64.69 335.72 5.37 -59.31 By element: Atomic # 1 Polarization: 5.75 SS G_CDS: 0.99 Total: 6.75 kcal Atomic # 6 Polarization: -23.08 SS G_CDS: 5.53 Total: -17.55 kcal Atomic # 7 Polarization: -90.82 SS G_CDS: -3.18 Total: -93.99 kcal Atomic # 14 Polarization: 43.46 SS G_CDS: 2.03 Total: 45.48 kcal Total: -64.69 5.37 -59.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000829773372.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.264 kcal (2) G-P(sol) polarization free energy of solvation -64.686 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.312 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds