Wall clock time and date at job start Mon Mar 30 2020 06:35:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99675 * 2 1 4 4 H 1.48503 * 109.47424 * 270.00431 * 3 2 1 5 5 H 1.48503 * 109.47352 * 30.00753 * 3 2 1 6 6 H 1.48502 * 109.47126 * 150.00418 * 3 2 1 7 7 C 1.37872 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99741 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00218 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.38290 * 119.92501 * 270.29834 * 10 9 7 12 12 C 1.38103 * 120.07421 * 180.25789 * 11 10 9 13 13 C 1.38918 * 119.92232 * 359.46620 * 12 11 10 14 14 N 1.39673 * 120.07035 * 180.27899 * 13 12 11 15 15 C 1.46507 * 119.99644 * 179.97438 * 14 13 12 16 16 H 1.08999 * 110.43592 * 327.54355 * 15 14 13 17 17 C 1.54893 * 110.48180 * 90.22603 * 15 14 13 18 18 C 1.54896 * 102.74542 * 156.62131 * 17 15 14 19 19 C 1.54269 * 104.19551 * 322.05594 * 18 17 15 20 20 C 1.53876 * 106.59869 * 23.60745 * 19 18 17 21 21 H 1.08999 * 110.03054 * 119.28301 * 20 19 18 22 22 N 1.46895 * 110.07452 * 240.69297 * 20 19 18 23 23 C 1.38912 * 119.85072 * 0.25753 * 13 12 11 24 24 C 1.38102 * 119.92404 * 359.97438 * 23 13 12 25 25 H 0.96998 * 120.00370 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46851 * 60.00562 * 9 7 2 27 27 H 1.09000 * 109.47290 * 300.00422 * 9 7 2 28 28 H 1.07998 * 119.96103 * 0.02562 * 11 10 9 29 29 H 1.08002 * 120.04122 * 179.75037 * 12 11 10 30 30 H 0.97003 * 120.00581 * 359.97438 * 14 13 12 31 31 H 1.08999 * 110.75339 * 274.93208 * 17 15 14 32 32 H 1.09001 * 110.76030 * 38.30509 * 17 15 14 33 33 H 1.08997 * 110.48480 * 203.37856 * 18 17 15 34 34 H 1.09003 * 110.59675 * 80.78784 * 18 17 15 35 35 H 1.09004 * 110.02808 * 264.33087 * 19 18 17 36 36 H 1.08995 * 110.07155 * 142.91799 * 19 18 17 37 37 H 1.00899 * 111.00056 * 297.19430 * 22 20 19 38 38 H 1.00903 * 110.99675 * 61.15221 * 22 20 19 39 39 H 1.08001 * 120.03561 * 180.02562 * 23 13 12 40 40 H 1.07998 * 119.96158 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6835 -4.1648 -1.1990 12 6 3.5769 -5.2179 -1.2027 13 6 4.0290 -5.7473 -0.0005 14 7 4.9370 -6.8086 -0.0006 15 6 5.4132 -7.3653 1.2682 16 1 5.4680 -6.5864 2.0288 17 6 4.4900 -8.5183 1.7346 18 6 5.4155 -9.3425 2.6638 19 6 6.7916 -9.2923 1.9684 20 6 6.7901 -8.0352 1.0810 21 1 7.5819 -7.3553 1.3954 22 7 6.9796 -8.4112 -0.3263 23 6 3.5762 -5.2185 1.2016 24 6 2.6791 -4.1685 1.1979 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.3354 -3.7496 -2.1333 29 1 3.9273 -5.6265 -2.1390 30 1 5.2525 -7.1771 -0.8406 31 1 3.6351 -8.1291 2.2874 32 1 4.1618 -9.1180 0.8855 33 1 5.0630 -10.3712 2.7382 34 1 5.4707 -8.8866 3.6523 35 1 6.9325 -10.1822 1.3548 36 1 7.5846 -9.2229 2.7129 37 1 7.8769 -8.8513 -0.4653 38 1 6.2309 -9.0078 -0.6452 39 1 3.9260 -5.6275 2.1380 40 1 2.3270 -3.7567 2.1321 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925822772.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:33 Heat of formation + Delta-G solvation = 13.398038 kcal Electronic energy + Delta-G solvation = -18870.885507 eV Core-core repulsion = 16070.249002 eV Total energy + Delta-G solvation = -2800.636505 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.60516 -38.16983 -34.58049 -32.74962 -32.72357 -30.31219 -29.98388 -27.73731 -26.80959 -25.52561 -22.74100 -22.10926 -20.89509 -20.17669 -19.41752 -17.61506 -16.31547 -16.17466 -15.84686 -14.92206 -14.70265 -14.36658 -14.08366 -13.95738 -13.60538 -13.13642 -12.77344 -12.68147 -12.55827 -12.25350 -11.67755 -11.43231 -11.38423 -11.18251 -11.13276 -10.99910 -10.88637 -10.58105 -10.45880 -9.98547 -9.67332 -9.32998 -9.04047 -8.87861 -8.32124 -8.12571 -6.60851 -5.91764 -3.96372 2.23375 2.48760 3.36756 3.42525 3.47490 3.66074 4.27797 4.36774 4.38593 4.50132 4.72290 4.78786 5.15335 5.15995 5.20903 5.27569 5.38217 5.40393 5.55985 5.63356 5.68149 5.72601 5.84204 6.02050 6.03775 6.16398 6.27696 6.43751 6.57100 6.77118 6.83419 7.00012 7.08423 7.40145 7.41180 7.58117 7.71104 8.02606 8.04005 8.06892 8.29251 8.47949 9.09718 9.66839 11.16174 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037589 B = 0.003670 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.728118 B = 7627.435017 C = 7685.299028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.893 3.107 4 H -0.281 1.281 5 H -0.287 1.287 6 H -0.274 1.274 7 C -0.507 4.507 8 H 0.056 0.944 9 C 0.054 3.946 10 C -0.088 4.088 11 C -0.079 4.079 12 C -0.195 4.195 13 C 0.186 3.814 14 N -0.738 5.738 15 C 0.157 3.843 16 H 0.086 0.914 17 C -0.143 4.143 18 C -0.124 4.124 19 C -0.157 4.157 20 C 0.080 3.920 21 H 0.086 0.914 22 N -0.839 5.839 23 C -0.200 4.200 24 C -0.080 4.080 25 H 0.260 0.740 26 H 0.024 0.976 27 H 0.024 0.976 28 H 0.115 0.885 29 H 0.107 0.893 30 H 0.402 0.598 31 H 0.072 0.928 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.068 0.932 35 H 0.062 0.938 36 H 0.066 0.934 37 H 0.343 0.657 38 H 0.340 0.660 39 H 0.107 0.893 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.421 -19.995 2.864 23.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.537 5.537 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.207 1.207 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.545 4.545 8 H 0.074 0.926 9 C 0.017 3.983 10 C -0.090 4.090 11 C -0.098 4.098 12 C -0.217 4.217 13 C 0.086 3.914 14 N -0.372 5.372 15 C 0.050 3.950 16 H 0.104 0.896 17 C -0.182 4.182 18 C -0.162 4.162 19 C -0.197 4.197 20 C -0.033 4.033 21 H 0.104 0.896 22 N -0.369 5.369 23 C -0.222 4.222 24 C -0.099 4.099 25 H 0.070 0.930 26 H 0.042 0.958 27 H 0.042 0.958 28 H 0.133 0.867 29 H 0.125 0.875 30 H 0.239 0.761 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.085 0.915 37 H 0.156 0.844 38 H 0.153 0.847 39 H 0.125 0.875 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 12.266 -19.113 2.871 22.891 hybrid contribution 0.699 -0.178 0.124 0.732 sum 12.965 -19.291 2.995 23.435 Atomic orbital electron populations 1.69964 1.06001 1.26578 1.51111 1.25019 0.94854 0.99153 0.95472 0.86577 0.79863 0.83394 0.78101 1.20680 1.21275 1.19863 1.21157 0.93075 0.90153 1.50114 0.92566 1.18233 0.92522 0.89709 0.97866 1.20424 0.99351 0.97355 0.91846 1.20816 0.96100 0.94694 0.98162 1.20450 1.04263 1.01593 0.95427 1.17651 0.91015 0.88888 0.93858 1.44338 1.49055 1.36863 1.06904 1.21620 0.91111 0.94436 0.87863 0.89632 1.23055 0.98548 0.97320 0.99299 1.22273 0.94694 1.00260 0.98955 1.23018 0.98326 0.98371 1.00008 1.22325 0.98116 0.95489 0.87377 0.89610 1.58641 1.07585 1.51543 1.19097 1.20516 1.04325 1.01856 0.95522 1.20823 0.96167 0.94792 0.98118 0.93017 0.95765 0.95777 0.86729 0.87509 0.76081 0.90972 0.91339 0.91746 0.91316 0.91877 0.91474 0.84358 0.84662 0.87493 0.86839 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.20 13.29 55.43 0.74 -26.47 16 2 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 22.13 29.54 -169.99 -5.02 17.10 16 4 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 5 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 6 H -0.27 -6.69 7.11 56.52 0.40 -6.29 16 7 C -0.51 -14.70 9.09 -34.44 -0.31 -15.01 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 9 C 0.05 1.44 5.10 -29.03 -0.15 1.29 16 10 C -0.09 -2.01 5.07 -104.59 -0.53 -2.54 16 11 C -0.08 -1.63 9.69 -39.61 -0.38 -2.02 16 12 C -0.19 -3.48 9.90 -39.38 -0.39 -3.87 16 13 C 0.19 3.12 6.65 -83.78 -0.56 2.56 16 14 N -0.74 -9.62 5.24 -50.56 -0.27 -9.89 16 15 C 0.16 1.69 2.82 -66.27 -0.19 1.50 16 16 H 0.09 1.01 6.40 -51.93 -0.33 0.68 16 17 C -0.14 -1.37 6.58 -24.73 -0.16 -1.53 16 18 C -0.12 -0.93 6.83 -25.07 -0.17 -1.10 16 19 C -0.16 -1.07 6.58 -25.61 -0.17 -1.24 16 20 C 0.08 0.67 3.98 -66.60 -0.26 0.41 16 21 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 22 N -0.84 -6.38 7.65 -3.72 -0.03 -6.41 16 23 C -0.20 -3.54 9.22 -39.38 -0.36 -3.90 16 24 C -0.08 -1.66 9.69 -39.62 -0.38 -2.04 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.68 8.09 -51.93 -0.42 0.26 16 27 H 0.02 0.67 8.08 -51.93 -0.42 0.25 16 28 H 0.11 2.31 8.06 -52.49 -0.42 1.89 16 29 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 30 H 0.40 4.89 6.84 -40.82 -0.28 4.61 16 31 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.06 0.39 7.92 -51.93 -0.41 -0.02 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.34 2.03 9.07 -39.29 -0.36 1.67 16 38 H 0.34 2.39 8.55 -39.29 -0.34 2.06 16 39 H 0.11 1.64 6.21 -52.49 -0.33 1.32 16 40 H 0.11 2.28 8.06 -52.49 -0.42 1.86 16 LS Contribution 323.90 15.07 4.88 4.88 Total: -1.00 -30.89 323.90 -10.04 -40.94 By element: Atomic # 1 Polarization: 12.04 SS G_CDS: -6.23 Total: 5.82 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: -4.12 Total: -25.98 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.44 Total: -42.76 kcal Atomic # 14 Polarization: 22.13 SS G_CDS: -5.02 Total: 17.10 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -30.89 -10.04 -40.94 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925822772.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.333 kcal (2) G-P(sol) polarization free energy of solvation -30.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds