Wall clock time and date at job start Mon Mar 30 2020 06:35:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 119.99675 * 2 1 4 4 H 1.48503 * 109.47424 * 270.00431 * 3 2 1 5 5 H 1.48503 * 109.47352 * 30.00753 * 3 2 1 6 6 H 1.48502 * 109.47126 * 150.00418 * 3 2 1 7 7 C 1.37872 * 120.00012 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99741 * 179.97438 * 7 2 1 9 9 C 1.50699 * 120.00218 * 359.97438 * 7 2 1 10 10 C 1.50703 * 109.47032 * 180.02562 * 9 7 2 11 11 C 1.38290 * 119.92501 * 270.29834 * 10 9 7 12 12 C 1.38103 * 120.07421 * 180.25789 * 11 10 9 13 13 C 1.38918 * 119.92232 * 359.46620 * 12 11 10 14 14 N 1.39673 * 120.07035 * 180.27899 * 13 12 11 15 15 C 1.46507 * 119.99644 * 179.97438 * 14 13 12 16 16 H 1.08999 * 110.43592 * 327.54355 * 15 14 13 17 17 C 1.54893 * 110.48180 * 90.22603 * 15 14 13 18 18 C 1.54896 * 102.74542 * 156.62131 * 17 15 14 19 19 C 1.54269 * 104.19551 * 322.05594 * 18 17 15 20 20 C 1.53876 * 106.59869 * 23.60745 * 19 18 17 21 21 H 1.08999 * 110.03054 * 119.28301 * 20 19 18 22 22 N 1.46895 * 110.07452 * 240.69297 * 20 19 18 23 23 C 1.38912 * 119.85072 * 0.25753 * 13 12 11 24 24 C 1.38102 * 119.92404 * 359.97438 * 23 13 12 25 25 H 0.96998 * 120.00370 * 359.97438 * 1 2 3 26 26 H 1.09003 * 109.46851 * 60.00562 * 9 7 2 27 27 H 1.09000 * 109.47290 * 300.00422 * 9 7 2 28 28 H 1.07998 * 119.96103 * 0.02562 * 11 10 9 29 29 H 1.08002 * 120.04122 * 179.75037 * 12 11 10 30 30 H 0.97003 * 120.00581 * 359.97438 * 14 13 12 31 31 H 1.08999 * 110.75339 * 274.93208 * 17 15 14 32 32 H 1.09001 * 110.76030 * 38.30509 * 17 15 14 33 33 H 1.08997 * 110.48480 * 203.37856 * 18 17 15 34 34 H 1.09003 * 110.59675 * 80.78784 * 18 17 15 35 35 H 1.09004 * 110.02808 * 264.33087 * 19 18 17 36 36 H 1.08995 * 110.07155 * 142.91799 * 19 18 17 37 37 H 1.00899 * 111.00056 * 297.19430 * 22 20 19 38 38 H 1.00903 * 110.99675 * 61.15221 * 22 20 19 39 39 H 1.08001 * 120.03561 * 180.02562 * 23 13 12 40 40 H 1.07998 * 119.96158 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6177 0.0000 4 1 2.4965 2.0466 -1.4001 5 1 1.4465 2.6526 0.7002 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2305 -3.6445 -0.0005 11 6 2.6835 -4.1648 -1.1990 12 6 3.5769 -5.2179 -1.2027 13 6 4.0290 -5.7473 -0.0005 14 7 4.9370 -6.8086 -0.0006 15 6 5.4132 -7.3653 1.2682 16 1 5.4680 -6.5864 2.0288 17 6 4.4900 -8.5183 1.7346 18 6 5.4155 -9.3425 2.6638 19 6 6.7916 -9.2923 1.9684 20 6 6.7901 -8.0352 1.0810 21 1 7.5819 -7.3553 1.3954 22 7 6.9796 -8.4112 -0.3263 23 6 3.5762 -5.2185 1.2016 24 6 2.6791 -4.1685 1.1979 25 1 -0.4850 0.8400 0.0004 26 1 0.6242 -2.5567 -0.8904 27 1 0.6247 -2.5571 0.8896 28 1 2.3354 -3.7496 -2.1333 29 1 3.9273 -5.6265 -2.1390 30 1 5.2525 -7.1771 -0.8406 31 1 3.6351 -8.1291 2.2874 32 1 4.1618 -9.1180 0.8855 33 1 5.0630 -10.3712 2.7382 34 1 5.4707 -8.8866 3.6523 35 1 6.9325 -10.1822 1.3548 36 1 7.5846 -9.2229 2.7129 37 1 7.8769 -8.8513 -0.4653 38 1 6.2309 -9.0078 -0.6452 39 1 3.9260 -5.6275 2.1380 40 1 2.3270 -3.7567 2.1321 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925822772.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:32 Heat of formation + Delta-G solvation = -5.793391 kcal Electronic energy + Delta-G solvation = -18871.717710 eV Core-core repulsion = 16070.249002 eV Total energy + Delta-G solvation = -2801.468708 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.65898 -39.38645 -36.05748 -34.68749 -33.35792 -31.90232 -31.57563 -28.93849 -27.72241 -26.94411 -24.65217 -23.52834 -21.80663 -21.40023 -20.41726 -18.65698 -18.44463 -17.27637 -16.83990 -16.66950 -15.85533 -15.54804 -15.23348 -14.90956 -14.67656 -14.46781 -14.37586 -14.03565 -13.91688 -13.59405 -13.20561 -13.12272 -12.68561 -12.51561 -12.36741 -12.09014 -12.02519 -11.95806 -11.55728 -11.53561 -11.49595 -11.33044 -10.57189 -10.45895 -9.65441 -9.60192 -8.26811 -7.87620 -6.29177 0.70362 0.93289 1.40075 1.41656 1.53332 2.42452 2.62543 3.13484 3.18350 3.59243 3.70203 3.75195 4.05738 4.18341 4.24739 4.44184 4.49553 4.52913 4.55186 4.57564 4.74494 4.78283 4.81387 4.99395 5.02083 5.11049 5.19959 5.21896 5.32130 5.39472 5.40884 5.43740 5.59534 5.72600 5.83827 6.07201 6.20537 6.26187 6.29253 6.57345 6.71561 6.84184 7.15430 7.39071 8.93111 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.037589 B = 0.003670 C = 0.003642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 744.728118 B = 7627.435017 C = 7685.299028 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C 0.001 3.999 3 Si 0.966 3.034 4 H -0.271 1.271 5 H -0.278 1.278 6 H -0.267 1.267 7 C -0.526 4.526 8 H 0.052 0.948 9 C 0.064 3.936 10 C -0.127 4.127 11 C -0.088 4.088 12 C -0.194 4.194 13 C 0.202 3.798 14 N -0.724 5.724 15 C 0.147 3.853 16 H 0.076 0.924 17 C -0.140 4.140 18 C -0.119 4.119 19 C -0.148 4.148 20 C 0.086 3.914 21 H 0.082 0.918 22 N -0.846 5.846 23 C -0.198 4.198 24 C -0.089 4.089 25 H 0.265 0.735 26 H -0.003 1.003 27 H -0.003 1.003 28 H 0.109 0.891 29 H 0.135 0.865 30 H 0.409 0.591 31 H 0.058 0.942 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.074 0.926 36 H 0.076 0.924 37 H 0.355 0.645 38 H 0.345 0.655 39 H 0.132 0.868 40 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.092 -21.581 3.005 26.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.196 4.196 3 Si 0.790 3.210 4 H -0.197 1.197 5 H -0.204 1.204 6 H -0.191 1.191 7 C -0.564 4.564 8 H 0.070 0.930 9 C 0.027 3.973 10 C -0.129 4.129 11 C -0.107 4.107 12 C -0.217 4.217 13 C 0.099 3.901 14 N -0.356 5.356 15 C 0.040 3.960 16 H 0.094 0.906 17 C -0.179 4.179 18 C -0.158 4.158 19 C -0.188 4.188 20 C -0.027 4.027 21 H 0.100 0.900 22 N -0.377 5.377 23 C -0.220 4.220 24 C -0.108 4.108 25 H 0.073 0.927 26 H 0.015 0.985 27 H 0.015 0.985 28 H 0.127 0.873 29 H 0.153 0.847 30 H 0.248 0.752 31 H 0.077 0.923 32 H 0.087 0.913 33 H 0.093 0.907 34 H 0.089 0.911 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.170 0.830 38 H 0.158 0.842 39 H 0.150 0.850 40 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 14.974 -20.751 3.011 25.766 hybrid contribution -0.081 0.167 0.086 0.204 sum 14.893 -20.585 3.097 25.595 Atomic orbital electron populations 1.70092 1.07677 1.27816 1.51717 1.25959 0.95796 1.03134 0.94747 0.85439 0.78570 0.78424 0.78572 1.19652 1.20361 1.19109 1.21461 0.93015 0.91554 1.50366 0.93012 1.17968 0.92793 0.91378 0.95124 1.20114 1.00958 0.97968 0.93863 1.20815 0.96987 0.95765 0.97097 1.20638 1.03319 1.00589 0.97136 1.17743 0.90373 0.88860 0.93118 1.44428 1.47423 1.35269 1.08489 1.21855 0.93022 0.94698 0.86415 0.90559 1.22980 0.98249 0.97030 0.99615 1.22256 0.94529 1.00407 0.98573 1.22951 0.98076 0.97851 0.99953 1.22206 0.96144 0.95993 0.88328 0.90020 1.58594 1.08533 1.52112 1.18506 1.20661 1.03378 1.00833 0.97141 1.20817 0.97057 0.95835 0.97057 0.92656 0.98480 0.98496 0.87260 0.84702 0.75176 0.92274 0.91314 0.90748 0.91106 0.90714 0.90525 0.83034 0.84166 0.85013 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.30 13.29 21.45 0.28 -58.02 16 2 C 0.00 0.07 5.46 84.65 0.46 0.53 16 3 Si 0.97 45.96 29.54 68.60 2.03 47.99 16 4 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 5 H -0.28 -12.77 7.11 99.48 0.71 -12.07 16 6 H -0.27 -12.29 7.11 99.48 0.71 -11.58 16 7 C -0.53 -31.69 9.09 25.60 0.23 -31.46 16 8 H 0.05 3.09 7.74 -2.91 -0.02 3.06 16 9 C 0.06 3.68 5.10 29.10 0.15 3.83 16 10 C -0.13 -6.07 5.07 -19.84 -0.10 -6.17 16 11 C -0.09 -3.71 9.69 22.25 0.22 -3.49 16 12 C -0.19 -6.69 9.90 22.40 0.22 -6.47 16 13 C 0.20 6.42 6.65 38.22 0.25 6.67 16 14 N -0.72 -16.93 5.24 -313.87 -1.65 -18.58 16 15 C 0.15 2.77 2.82 46.07 0.13 2.90 16 16 H 0.08 1.63 6.40 -2.39 -0.02 1.61 16 17 C -0.14 -2.33 6.58 31.89 0.21 -2.12 16 18 C -0.12 -1.43 6.83 31.67 0.22 -1.22 16 19 C -0.15 -1.50 6.58 31.32 0.21 -1.29 16 20 C 0.09 1.18 3.98 45.64 0.18 1.37 16 21 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 22 N -0.85 -10.14 7.65 -165.68 -1.27 -11.41 16 23 C -0.20 -6.81 9.22 22.40 0.21 -6.61 16 24 C -0.09 -3.76 9.69 22.25 0.22 -3.54 16 25 H 0.26 15.44 8.31 -92.71 -0.77 14.67 16 26 H 0.00 -0.19 8.09 -2.39 -0.02 -0.21 16 27 H 0.00 -0.20 8.08 -2.39 -0.02 -0.22 16 28 H 0.11 4.58 8.06 -2.91 -0.02 4.56 16 29 H 0.14 3.83 8.06 -2.91 -0.02 3.81 16 30 H 0.41 8.63 6.84 -92.71 -0.63 8.00 16 31 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 32 H 0.07 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.07 0.62 7.92 -2.39 -0.02 0.60 16 36 H 0.08 0.68 8.14 -2.39 -0.02 0.66 16 37 H 0.35 3.02 9.07 -89.69 -0.81 2.21 16 38 H 0.34 3.69 8.55 -89.69 -0.77 2.92 16 39 H 0.13 3.83 6.21 -2.91 -0.02 3.81 16 40 H 0.11 4.53 8.06 -2.91 -0.02 4.51 16 Total: -1.00 -68.42 323.90 1.03 -67.39 By element: Atomic # 1 Polarization: 20.85 SS G_CDS: -1.16 Total: 19.69 kcal Atomic # 6 Polarization: -49.86 SS G_CDS: 2.80 Total: -47.06 kcal Atomic # 7 Polarization: -85.37 SS G_CDS: -2.63 Total: -88.00 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.99 kcal Total: -68.42 1.03 -67.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925822772.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.595 kcal (2) G-P(sol) polarization free energy of solvation -68.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.827 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.388 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.793 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds