Wall clock time and date at job start Mon Mar 30 2020 06:35:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 C 1.50701 * 109.46837 * 179.97438 * 9 7 2 11 11 C 1.38287 * 119.92434 * 269.72717 * 10 9 7 12 12 C 1.38111 * 120.07305 * 179.72462 * 11 10 9 13 13 C 1.38918 * 119.92006 * 0.55143 * 12 11 10 14 14 N 1.39680 * 120.07019 * 179.74824 * 13 12 11 15 15 C 1.46497 * 120.00047 * 359.97317 * 14 13 12 16 16 H 1.09007 * 110.01761 * 34.30535 * 15 14 13 17 17 C 1.54265 * 110.03437 * 272.90853 * 15 14 13 18 18 C 1.54966 * 104.16148 * 217.13903 * 17 15 14 19 19 C 1.54885 * 102.77537 * 37.88433 * 18 17 15 20 20 C 1.53879 * 110.03029 * 155.68867 * 15 14 13 21 21 H 1.08999 * 110.03059 * 0.02562 * 20 15 14 22 22 N 1.46899 * 110.03399 * 238.56565 * 20 15 14 23 23 C 1.38903 * 119.85480 * 359.72070 * 13 12 11 24 24 C 1.38102 * 119.92367 * 0.02562 * 23 13 12 25 25 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47047 * 299.99662 * 9 7 2 27 27 H 1.09005 * 109.46894 * 60.00237 * 9 7 2 28 28 H 1.07991 * 119.96656 * 359.97438 * 11 10 9 29 29 H 1.07995 * 120.04081 * 180.27544 * 12 11 10 30 30 H 0.96996 * 119.99932 * 179.97438 * 14 13 12 31 31 H 1.08999 * 110.48222 * 335.78733 * 17 15 14 32 32 H 1.08999 * 110.48739 * 98.42794 * 17 15 14 33 33 H 1.09008 * 110.71540 * 279.57341 * 18 17 15 34 34 H 1.08996 * 110.92429 * 156.29466 * 18 17 15 35 35 H 1.09007 * 110.48577 * 203.40457 * 19 18 17 36 36 H 1.09002 * 110.59909 * 80.82355 * 19 18 17 37 37 H 1.00898 * 110.99777 * 179.97438 * 22 20 15 38 38 H 1.00891 * 111.00114 * 303.95838 * 22 20 15 39 39 H 1.08002 * 120.04142 * 180.02562 * 23 13 12 40 40 H 1.08006 * 119.96379 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 6 4.0137 -2.6150 0.0182 11 6 4.2439 -3.2601 1.2196 12 6 4.6988 -4.5641 1.2288 13 6 4.9358 -5.2238 0.0295 14 7 5.4009 -6.5409 0.0352 15 6 5.6397 -7.2279 1.3069 16 1 4.9106 -6.9029 2.0492 17 6 7.0693 -6.9337 1.8062 18 6 7.5302 -8.2684 2.4446 19 6 6.9239 -9.3301 1.4938 20 6 5.5469 -8.7511 1.1087 21 1 5.3246 -8.9790 0.0662 22 7 4.5046 -9.3094 1.9804 23 6 4.7089 -4.5710 -1.1754 24 6 4.2490 -3.2688 -1.1774 25 1 -0.4849 0.8401 -0.0004 26 1 3.8785 -0.6826 -0.8776 27 1 3.8710 -0.6782 0.9024 28 1 4.0641 -2.7450 2.1515 29 1 4.8742 -5.0689 2.1673 30 1 5.5657 -7.0007 -0.8028 31 1 7.7174 -6.6664 0.9715 32 1 7.0571 -6.1378 2.5509 33 1 7.1249 -8.3746 3.4510 34 1 8.6178 -8.3382 2.4584 35 1 6.8061 -10.2825 2.0110 36 1 7.5475 -9.4526 0.6082 37 1 4.4310 -10.3087 1.8616 38 1 4.6748 -9.0712 2.9459 39 1 4.8918 -5.0812 -2.1096 40 1 4.0719 -2.7607 -2.1139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000925822776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:38 Heat of formation + Delta-G solvation = 13.768136 kcal Electronic energy + Delta-G solvation = -18842.274795 eV Core-core repulsion = 16041.654339 eV Total energy + Delta-G solvation = -2800.620456 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -39.63804 -38.26032 -34.81543 -32.81930 -32.49619 -30.59103 -30.20040 -27.96029 -27.05342 -25.52514 -22.46021 -22.19993 -20.97649 -20.13562 -19.77684 -17.12421 -16.72214 -16.66105 -15.45425 -15.16068 -15.01572 -14.47188 -14.06881 -13.92239 -13.64247 -13.19384 -12.92112 -12.71163 -12.43449 -12.16928 -11.99268 -11.82357 -11.48443 -11.37812 -11.27580 -11.00772 -10.92587 -10.55921 -10.17227 -10.07495 -9.86134 -9.37491 -9.06842 -8.93083 -8.49503 -8.21611 -6.70712 -5.98385 -3.96055 2.14208 2.37544 3.34605 3.41907 3.45870 3.59676 4.14873 4.23055 4.49490 4.56020 4.63012 4.69866 5.11671 5.15140 5.24389 5.29791 5.33836 5.35262 5.51106 5.58725 5.60586 5.65132 5.75850 5.92060 6.03127 6.04511 6.18100 6.30084 6.46239 6.69846 6.85840 6.86088 7.12095 7.13337 7.14631 7.25317 7.48578 7.79522 7.79785 7.88318 8.08666 8.61897 9.09009 9.62869 11.14882 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.040750 B = 0.003698 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.948110 B = 7569.842851 C = 7679.793056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.066 3.934 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.265 1.265 7 C -0.508 4.508 8 H 0.073 0.927 9 C 0.020 3.980 10 C -0.082 4.082 11 C -0.078 4.078 12 C -0.193 4.193 13 C 0.188 3.812 14 N -0.747 5.747 15 C 0.158 3.842 16 H 0.089 0.911 17 C -0.142 4.142 18 C -0.124 4.124 19 C -0.159 4.159 20 C 0.081 3.919 21 H 0.085 0.915 22 N -0.838 5.838 23 C -0.194 4.194 24 C -0.078 4.078 25 H 0.263 0.737 26 H 0.019 0.981 27 H 0.023 0.977 28 H 0.115 0.885 29 H 0.109 0.891 30 H 0.392 0.608 31 H 0.072 0.928 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.341 0.659 38 H 0.341 0.659 39 H 0.108 0.892 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.851 -18.206 3.377 24.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.135 4.135 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.214 1.214 6 H -0.189 1.189 7 C -0.547 4.547 8 H 0.091 0.909 9 C -0.017 4.017 10 C -0.083 4.083 11 C -0.097 4.097 12 C -0.215 4.215 13 C 0.089 3.911 14 N -0.378 5.378 15 C 0.052 3.948 16 H 0.107 0.893 17 C -0.181 4.181 18 C -0.162 4.162 19 C -0.199 4.199 20 C -0.031 4.031 21 H 0.103 0.897 22 N -0.367 5.367 23 C -0.216 4.216 24 C -0.096 4.096 25 H 0.072 0.928 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.134 0.866 29 H 0.127 0.873 30 H 0.226 0.774 31 H 0.091 0.909 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.082 0.918 36 H 0.088 0.912 37 H 0.154 0.846 38 H 0.154 0.846 39 H 0.126 0.874 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 15.169 -17.665 3.148 23.496 hybrid contribution 1.109 0.110 0.084 1.118 sum 16.278 -17.555 3.232 24.158 Atomic orbital electron populations 1.69915 1.06258 1.26782 1.51281 1.25025 0.94724 0.98994 0.94733 0.86806 0.80409 0.83734 0.78550 1.20273 1.21397 1.18935 1.21038 0.88665 0.94522 1.50427 0.90878 1.18699 0.97128 0.89034 0.96866 1.20029 0.97840 0.98343 0.92108 1.20809 0.97245 0.93613 0.98006 1.20513 1.09329 0.96025 0.95650 1.17604 0.95261 0.84326 0.93936 1.44454 1.75347 1.11711 1.06303 1.21417 0.95864 0.90104 0.87462 0.89333 1.22971 0.97122 0.97176 1.00832 1.22466 1.00440 0.94824 0.98491 1.23214 0.98236 0.98383 1.00069 1.22289 0.88768 0.94049 0.98006 0.89680 1.58826 1.49210 1.17604 1.11070 1.20439 1.09454 0.96291 0.95398 1.20788 0.97239 0.93515 0.98086 0.92764 0.96263 0.95831 0.86648 0.87260 0.77427 0.90891 0.91165 0.91593 0.91496 0.91762 0.91159 0.84568 0.84589 0.87360 0.86580 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.34 13.96 55.43 0.77 -27.56 16 2 C 0.07 1.96 5.47 -17.82 -0.10 1.86 16 3 Si 0.88 21.91 27.47 -169.99 -4.67 17.24 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 6 H -0.26 -6.34 6.54 56.52 0.37 -5.97 16 7 C -0.51 -14.90 9.65 -34.44 -0.33 -15.23 16 8 H 0.07 2.35 7.98 -52.49 -0.42 1.93 16 9 C 0.02 0.49 4.17 -29.03 -0.12 0.37 16 10 C -0.08 -1.79 5.07 -104.59 -0.53 -2.33 16 11 C -0.08 -1.56 9.69 -39.61 -0.38 -1.94 16 12 C -0.19 -3.35 9.21 -39.38 -0.36 -3.71 16 13 C 0.19 3.06 6.65 -83.78 -0.56 2.51 16 14 N -0.75 -9.36 5.22 -51.08 -0.27 -9.63 16 15 C 0.16 1.69 2.66 -66.81 -0.18 1.51 16 16 H 0.09 1.10 6.24 -51.93 -0.32 0.77 16 17 C -0.14 -1.34 6.54 -25.03 -0.16 -1.50 16 18 C -0.12 -0.90 6.91 -24.70 -0.17 -1.07 16 19 C -0.16 -1.09 6.52 -25.07 -0.16 -1.25 16 20 C 0.08 0.70 3.80 -66.59 -0.25 0.44 16 21 H 0.09 0.77 7.61 -51.93 -0.40 0.37 16 22 N -0.84 -6.96 9.11 -3.72 -0.03 -6.99 16 23 C -0.19 -3.32 9.90 -39.39 -0.39 -3.71 16 24 C -0.08 -1.54 9.69 -39.61 -0.38 -1.93 16 25 H 0.26 7.69 8.31 -40.82 -0.34 7.35 16 26 H 0.02 0.47 7.51 -51.93 -0.39 0.08 16 27 H 0.02 0.58 7.14 -51.93 -0.37 0.21 16 28 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 29 H 0.11 1.66 6.24 -52.49 -0.33 1.34 16 30 H 0.39 4.28 8.32 -40.82 -0.34 3.94 16 31 H 0.07 0.74 8.05 -51.93 -0.42 0.32 16 32 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.07 0.44 8.14 -51.92 -0.42 0.02 16 34 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 35 H 0.06 0.38 8.03 -51.92 -0.42 -0.04 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.34 2.21 9.06 -39.29 -0.36 1.86 16 38 H 0.34 2.51 8.97 -39.30 -0.35 2.16 16 39 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 40 H 0.12 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 322.65 15.07 4.86 4.86 Total: -1.00 -32.03 322.65 -9.66 -41.69 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -6.24 Total: 6.37 kcal Atomic # 6 Polarization: -21.89 SS G_CDS: -4.09 Total: -25.98 kcal Atomic # 7 Polarization: -44.66 SS G_CDS: 0.47 Total: -44.18 kcal Atomic # 14 Polarization: 21.91 SS G_CDS: -4.67 Total: 17.24 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -32.03 -9.66 -41.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925822776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.460 kcal (2) G-P(sol) polarization free energy of solvation -32.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.692 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds