Wall clock time and date at job start Mon Mar 30 2020 06:35:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00588 * 2 1 4 4 H 1.48501 * 109.46758 * 269.72240 * 3 2 1 5 5 H 1.48499 * 109.47026 * 29.72088 * 3 2 1 6 6 H 1.48496 * 109.47474 * 149.72124 * 3 2 1 7 7 C 1.37884 * 119.99573 * 179.72306 * 2 1 3 8 8 H 1.08002 * 119.99706 * 0.27353 * 7 2 1 9 9 C 1.50699 * 119.99783 * 180.27665 * 7 2 1 10 10 C 1.50701 * 109.46837 * 179.97438 * 9 7 2 11 11 C 1.38287 * 119.92434 * 269.72717 * 10 9 7 12 12 C 1.38111 * 120.07305 * 179.72462 * 11 10 9 13 13 C 1.38918 * 119.92006 * 0.55143 * 12 11 10 14 14 N 1.39680 * 120.07019 * 179.74824 * 13 12 11 15 15 C 1.46497 * 120.00047 * 359.97317 * 14 13 12 16 16 H 1.09007 * 110.01761 * 34.30535 * 15 14 13 17 17 C 1.54265 * 110.03437 * 272.90853 * 15 14 13 18 18 C 1.54966 * 104.16148 * 217.13903 * 17 15 14 19 19 C 1.54885 * 102.77537 * 37.88433 * 18 17 15 20 20 C 1.53879 * 110.03029 * 155.68867 * 15 14 13 21 21 H 1.08999 * 110.03059 * 0.02562 * 20 15 14 22 22 N 1.46899 * 110.03399 * 238.56565 * 20 15 14 23 23 C 1.38903 * 119.85480 * 359.72070 * 13 12 11 24 24 C 1.38102 * 119.92367 * 0.02562 * 23 13 12 25 25 H 0.97004 * 119.99485 * 0.02562 * 1 2 3 26 26 H 1.08992 * 109.47047 * 299.99662 * 9 7 2 27 27 H 1.09005 * 109.46894 * 60.00237 * 9 7 2 28 28 H 1.07991 * 119.96656 * 359.97438 * 11 10 9 29 29 H 1.07995 * 120.04081 * 180.27544 * 12 11 10 30 30 H 0.96996 * 119.99932 * 179.97438 * 14 13 12 31 31 H 1.08999 * 110.48222 * 335.78733 * 17 15 14 32 32 H 1.08999 * 110.48739 * 98.42794 * 17 15 14 33 33 H 1.09008 * 110.71540 * 279.57341 * 18 17 15 34 34 H 1.08996 * 110.92429 * 156.29466 * 18 17 15 35 35 H 1.09007 * 110.48577 * 203.40457 * 19 18 17 36 36 H 1.09002 * 110.59909 * 80.82355 * 19 18 17 37 37 H 1.00898 * 110.99777 * 179.97438 * 22 20 15 38 38 H 1.00891 * 111.00114 * 303.95838 * 22 20 15 39 39 H 1.08002 * 120.04142 * 180.02562 * 23 13 12 40 40 H 1.08006 * 119.96379 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.5027 2.0428 -1.4001 5 1 1.4439 2.6543 0.6941 6 1 3.5439 1.4417 0.7059 7 6 2.0045 -1.1941 0.0058 8 1 1.4644 -2.1294 0.0058 9 6 3.5114 -1.1942 0.0121 10 6 4.0137 -2.6150 0.0182 11 6 4.2439 -3.2601 1.2196 12 6 4.6988 -4.5641 1.2288 13 6 4.9358 -5.2238 0.0295 14 7 5.4009 -6.5409 0.0352 15 6 5.6397 -7.2279 1.3069 16 1 4.9106 -6.9029 2.0492 17 6 7.0693 -6.9337 1.8062 18 6 7.5302 -8.2684 2.4446 19 6 6.9239 -9.3301 1.4938 20 6 5.5469 -8.7511 1.1087 21 1 5.3246 -8.9790 0.0662 22 7 4.5046 -9.3094 1.9804 23 6 4.7089 -4.5710 -1.1754 24 6 4.2490 -3.2688 -1.1774 25 1 -0.4849 0.8401 -0.0004 26 1 3.8785 -0.6826 -0.8776 27 1 3.8710 -0.6782 0.9024 28 1 4.0641 -2.7450 2.1515 29 1 4.8742 -5.0689 2.1673 30 1 5.5657 -7.0007 -0.8028 31 1 7.7174 -6.6664 0.9715 32 1 7.0571 -6.1378 2.5509 33 1 7.1249 -8.3746 3.4510 34 1 8.6178 -8.3382 2.4584 35 1 6.8061 -10.2825 2.0110 36 1 7.5475 -9.4526 0.6082 37 1 4.4310 -10.3087 1.8616 38 1 4.6748 -9.0712 2.9459 39 1 4.8918 -5.0812 -2.1096 40 1 4.0719 -2.7607 -2.1139 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000925822776.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:35:37 Heat of formation + Delta-G solvation = -7.668527 kcal Electronic energy + Delta-G solvation = -18843.204359 eV Core-core repulsion = 16041.654339 eV Total energy + Delta-G solvation = -2801.550020 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.68995 -39.40408 -36.17246 -34.73779 -33.26329 -32.24183 -31.67389 -29.15253 -28.06195 -26.72869 -24.26336 -23.57787 -21.78142 -21.41324 -20.80169 -18.92324 -18.29803 -17.59451 -16.62872 -16.29670 -15.93023 -15.84010 -15.60219 -14.91222 -14.79215 -14.58685 -14.30163 -14.19414 -14.06539 -13.44014 -13.36049 -12.93948 -12.78317 -12.57784 -12.38738 -12.01536 -11.97224 -11.77859 -11.70395 -11.59879 -11.53916 -11.45020 -10.75755 -10.55090 -9.67997 -9.57445 -8.27514 -8.03488 -6.30908 0.67676 0.88830 1.37380 1.39536 1.52179 2.38099 2.55571 3.07276 3.13204 3.48502 3.58539 3.91170 4.04334 4.13910 4.22699 4.40429 4.44469 4.48850 4.53388 4.63298 4.70816 4.73087 4.76651 4.90048 4.97540 5.09086 5.11237 5.14177 5.18055 5.26566 5.36179 5.38604 5.53937 5.62006 5.70717 6.07341 6.16710 6.26420 6.32922 6.59858 6.60376 6.76022 6.97814 7.32307 8.90193 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.040750 B = 0.003698 C = 0.003645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 686.948110 B = 7569.842851 C = 7679.793056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.952 5.952 2 C 0.004 3.996 3 Si 0.953 3.047 4 H -0.264 1.264 5 H -0.282 1.282 6 H -0.247 1.247 7 C -0.517 4.517 8 H 0.024 0.976 9 C 0.028 3.972 10 C -0.124 4.124 11 C -0.089 4.089 12 C -0.196 4.196 13 C 0.202 3.798 14 N -0.734 5.734 15 C 0.153 3.847 16 H 0.072 0.928 17 C -0.139 4.139 18 C -0.119 4.119 19 C -0.150 4.150 20 C 0.086 3.914 21 H 0.083 0.917 22 N -0.851 5.851 23 C -0.195 4.195 24 C -0.088 4.088 25 H 0.267 0.733 26 H 0.025 0.975 27 H 0.025 0.975 28 H 0.113 0.887 29 H 0.130 0.870 30 H 0.403 0.597 31 H 0.067 0.933 32 H 0.062 0.938 33 H 0.072 0.928 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.075 0.925 37 H 0.352 0.648 38 H 0.346 0.654 39 H 0.138 0.862 40 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.283 -19.561 3.461 26.998 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.593 5.593 2 C -0.193 4.193 3 Si 0.776 3.224 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.170 1.170 7 C -0.555 4.555 8 H 0.042 0.958 9 C -0.009 4.009 10 C -0.125 4.125 11 C -0.108 4.108 12 C -0.219 4.219 13 C 0.099 3.901 14 N -0.365 5.365 15 C 0.046 3.954 16 H 0.090 0.910 17 C -0.178 4.178 18 C -0.157 4.157 19 C -0.190 4.190 20 C -0.026 4.026 21 H 0.101 0.899 22 N -0.382 5.382 23 C -0.217 4.217 24 C -0.107 4.107 25 H 0.076 0.924 26 H 0.043 0.957 27 H 0.043 0.957 28 H 0.131 0.869 29 H 0.147 0.853 30 H 0.239 0.761 31 H 0.086 0.914 32 H 0.081 0.919 33 H 0.091 0.909 34 H 0.094 0.906 35 H 0.097 0.903 36 H 0.094 0.906 37 H 0.167 0.833 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 17.632 -19.082 3.232 26.181 hybrid contribution 0.326 0.320 0.074 0.463 sum 17.958 -18.761 3.306 26.180 Atomic orbital electron populations 1.70078 1.08334 1.28165 1.52743 1.26035 0.95643 1.03481 0.94104 0.85613 0.79425 0.77979 0.79370 1.18930 1.20778 1.17039 1.21272 0.91239 0.92805 1.50228 0.95752 1.18529 0.93910 0.91563 0.96907 1.19911 1.01227 0.97588 0.93823 1.20875 0.97808 0.94832 0.97301 1.20671 1.08920 0.95129 0.97130 1.17709 0.93453 0.85609 0.93286 1.44545 1.73808 1.10269 1.07886 1.21590 0.96227 0.91500 0.86041 0.91001 1.22900 0.96042 0.98341 1.00551 1.22451 1.01083 0.93394 0.98746 1.23144 0.96856 0.98688 1.00269 1.22182 0.90017 0.92371 0.98032 0.89913 1.58796 1.49355 1.18596 1.11456 1.20676 1.08649 0.95347 0.97038 1.20886 0.97671 0.94801 0.97359 0.92449 0.95689 0.95684 0.86940 0.85271 0.76117 0.91414 0.91946 0.90915 0.90555 0.90321 0.90648 0.83317 0.84018 0.84428 0.86618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -61.69 13.96 21.45 0.30 -61.39 16 2 C 0.00 0.22 5.47 84.66 0.46 0.69 16 3 Si 0.95 45.54 27.47 68.60 1.88 47.42 16 4 H -0.26 -12.04 7.11 99.48 0.71 -11.34 16 5 H -0.28 -13.12 7.11 99.48 0.71 -12.41 16 6 H -0.25 -10.99 6.54 99.48 0.65 -10.34 16 7 C -0.52 -31.54 9.65 25.60 0.25 -31.29 16 8 H 0.02 1.66 7.98 -2.91 -0.02 1.64 16 9 C 0.03 1.42 4.17 29.10 0.12 1.55 16 10 C -0.12 -5.56 5.07 -19.84 -0.10 -5.66 16 11 C -0.09 -3.63 9.69 22.25 0.22 -3.42 16 12 C -0.20 -6.68 9.21 22.40 0.21 -6.47 16 13 C 0.20 6.26 6.65 38.21 0.25 6.52 16 14 N -0.73 -16.76 5.22 -315.52 -1.65 -18.40 16 15 C 0.15 2.93 2.66 45.72 0.12 3.05 16 16 H 0.07 1.66 6.24 -2.38 -0.01 1.65 16 17 C -0.14 -2.32 6.54 31.70 0.21 -2.11 16 18 C -0.12 -1.38 6.91 31.91 0.22 -1.16 16 19 C -0.15 -1.55 6.52 31.67 0.21 -1.35 16 20 C 0.09 1.25 3.80 45.64 0.17 1.43 16 21 H 0.08 1.26 7.61 -2.39 -0.02 1.24 16 22 N -0.85 -12.23 9.11 -165.67 -1.51 -13.74 16 23 C -0.19 -6.43 9.90 22.40 0.22 -6.20 16 24 C -0.09 -3.54 9.69 22.25 0.22 -3.32 16 25 H 0.27 16.01 8.31 -92.71 -0.77 15.23 16 26 H 0.02 1.21 7.51 -2.39 -0.02 1.19 16 27 H 0.02 1.23 7.14 -2.38 -0.02 1.22 16 28 H 0.11 4.47 8.06 -2.92 -0.02 4.45 16 29 H 0.13 3.80 6.24 -2.91 -0.02 3.78 16 30 H 0.40 7.65 8.32 -92.71 -0.77 6.88 16 31 H 0.07 1.22 8.05 -2.39 -0.02 1.20 16 32 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 33 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 34 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.08 0.64 8.03 -2.38 -0.02 0.62 16 36 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 37 H 0.35 3.71 9.06 -89.70 -0.81 2.90 16 38 H 0.35 4.36 8.97 -89.70 -0.80 3.55 16 39 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 40 H 0.12 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -71.37 322.65 0.41 -70.96 By element: Atomic # 1 Polarization: 24.30 SS G_CDS: -1.39 Total: 22.91 kcal Atomic # 6 Polarization: -50.54 SS G_CDS: 2.77 Total: -47.76 kcal Atomic # 7 Polarization: -90.67 SS G_CDS: -2.86 Total: -93.53 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 1.88 Total: 47.42 kcal Total: -71.37 0.41 -70.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000925822776.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.288 kcal (2) G-P(sol) polarization free energy of solvation -71.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.411 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.669 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds