Wall clock time and date at job start Mon Mar 30 2020 06:33:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46882 * 10.57177 * 3 2 1 5 5 C 1.36932 * 120.00476 * 95.74581 * 4 3 2 6 6 H 1.07997 * 120.00489 * 160.16405 * 5 4 3 7 7 C 1.38816 * 119.99498 * 339.89163 * 5 4 3 8 8 N 1.31618 * 119.99939 * 340.59746 * 7 5 4 9 9 Si 1.86798 * 119.99927 * 160.60273 * 7 5 4 10 10 H 1.48497 * 109.47219 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47304 * 119.99844 * 9 7 5 12 12 H 1.48510 * 109.46828 * 239.99751 * 9 7 5 13 13 C 1.46504 * 119.99862 * 275.74365 * 4 3 2 14 14 C 1.53005 * 109.46924 * 299.99877 * 13 4 3 15 15 C 1.53006 * 109.47004 * 179.97438 * 14 13 4 16 16 C 1.52994 * 109.47281 * 300.00591 * 15 14 13 17 17 C 1.53005 * 109.47584 * 59.99764 * 16 15 14 18 18 C 1.52996 * 109.47065 * 59.99825 * 17 16 15 19 19 C 1.52999 * 109.47398 * 300.00487 * 18 17 16 20 20 C 1.53005 * 109.47410 * 59.99724 * 19 18 17 21 21 C 1.52996 * 109.47040 * 299.99761 * 19 18 17 22 22 C 1.52994 * 109.47255 * 60.00403 * 13 4 3 23 23 H 1.08998 * 109.47031 * 250.57451 * 3 2 1 24 24 H 1.09001 * 109.46929 * 130.57048 * 3 2 1 25 25 H 0.97004 * 119.99647 * 180.02562 * 8 7 5 26 26 H 1.08993 * 109.47317 * 299.99982 * 14 13 4 27 27 H 1.09000 * 109.46843 * 60.00286 * 14 13 4 28 28 H 1.08992 * 109.47288 * 180.02562 * 15 14 13 29 29 H 1.09000 * 109.46999 * 299.99898 * 16 15 14 30 30 H 1.08994 * 109.47300 * 180.02562 * 16 15 14 31 31 H 1.08993 * 109.47317 * 180.02562 * 17 16 15 32 32 H 1.09004 * 109.47541 * 180.02562 * 18 17 16 33 33 H 1.09006 * 109.46940 * 60.00341 * 18 17 16 34 34 H 1.09000 * 109.47335 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.47174 * 59.99635 * 20 19 18 36 36 H 1.08993 * 109.47317 * 179.97438 * 20 19 18 37 37 H 1.09001 * 109.47150 * 300.00151 * 21 19 18 38 38 H 1.09006 * 109.47319 * 179.97438 * 21 19 18 39 39 H 1.09000 * 109.46999 * 300.00012 * 22 13 4 40 40 H 1.09001 * 109.47446 * 59.99766 * 22 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0969 -1.3569 -0.2534 5 6 3.4373 -1.7360 -1.5244 6 1 4.0819 -2.5885 -1.6794 7 6 2.9490 -1.0279 -2.6140 8 7 1.8888 -0.2600 -2.4783 9 14 3.7968 -1.1651 -4.2729 10 1 4.9572 -2.0849 -4.1612 11 1 2.8388 -1.6955 -5.2760 12 1 4.2686 0.1767 -4.7001 13 6 3.2218 -2.3089 0.8531 14 6 4.1946 -1.7543 1.8957 15 6 4.3245 -2.7483 3.0517 16 6 2.9537 -2.9629 3.6963 17 6 1.9809 -3.5175 2.6537 18 6 2.5089 -4.8515 2.1222 19 6 3.8798 -4.6370 1.4775 20 6 4.8526 -4.0823 2.5201 21 6 3.7499 -3.6430 0.3217 22 6 1.8511 -2.5241 1.4979 23 1 2.9712 0.3426 0.9692 24 1 2.9711 0.6692 -0.7806 25 1 1.5474 0.2345 -3.2398 26 1 5.1710 -1.6011 1.4364 27 1 3.8181 -0.8042 2.2747 28 1 5.0171 -2.3531 3.7946 29 1 2.5774 -2.0125 4.0749 30 1 3.0463 -3.6706 4.5200 31 1 1.0042 -3.6700 3.1128 32 1 1.8162 -5.2464 1.3790 33 1 2.6015 -5.5596 2.9457 34 1 4.2562 -5.5874 1.0992 35 1 4.9451 -4.7904 3.3437 36 1 5.8293 -3.9300 2.0610 37 1 3.0569 -4.0381 -0.4211 38 1 4.7266 -3.4898 -0.1374 39 1 1.4747 -1.5740 1.8768 40 1 1.1581 -2.9192 0.7551 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615946286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:48 Heat of formation + Delta-G solvation = 28.811292 kcal Electronic energy + Delta-G solvation = -21211.598527 eV Core-core repulsion = 18411.630391 eV Total energy + Delta-G solvation = -2799.968136 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.96619 -36.26423 -34.24006 -32.29028 -32.18263 -31.96707 -29.47801 -27.07876 -25.43956 -25.09903 -23.33849 -21.01793 -20.97381 -19.71309 -17.27953 -16.96629 -15.90116 -15.27217 -14.27091 -14.04416 -13.98966 -13.92598 -13.52414 -13.14415 -13.01712 -12.87398 -12.45358 -12.16616 -12.02025 -11.79353 -11.63691 -11.21433 -10.97606 -10.86119 -10.62566 -10.50422 -10.42491 -10.35888 -10.27661 -10.12434 -9.96471 -9.75016 -9.37134 -9.31410 -9.01637 -8.64818 -7.05136 -5.90116 -3.29631 3.33968 3.42661 3.44441 4.16384 4.44469 4.55279 4.91183 4.92530 4.94887 5.29600 5.47567 5.51958 5.52958 5.63534 5.66019 5.69485 5.75533 5.79921 5.83921 5.92652 5.97217 6.12321 6.18481 6.21419 6.30326 6.31460 6.46029 6.50542 6.53286 6.55336 6.66122 6.69233 6.79666 6.81815 6.94753 7.06236 7.13170 7.25483 7.74186 8.23179 9.03380 9.29371 9.70367 10.16165 11.18237 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.008617 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.162389 B = 3248.468024 C = 3834.490248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C 0.254 3.746 3 C 0.258 3.742 4 N -0.575 5.575 5 C -0.259 4.259 6 H 0.085 0.915 7 C 0.002 3.998 8 N -0.903 5.903 9 Si 0.904 3.096 10 H -0.277 1.277 11 H -0.293 1.293 12 H -0.289 1.289 13 C 0.206 3.794 14 C -0.119 4.119 15 C -0.083 4.083 16 C -0.105 4.105 17 C -0.085 4.085 18 C -0.105 4.105 19 C -0.087 4.087 20 C -0.104 4.104 21 C -0.094 4.094 22 C -0.118 4.118 23 H 0.056 0.944 24 H 0.108 0.892 25 H 0.257 0.743 26 H 0.064 0.936 27 H 0.056 0.944 28 H 0.061 0.939 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.058 0.942 32 H 0.058 0.942 33 H 0.053 0.947 34 H 0.063 0.937 35 H 0.053 0.947 36 H 0.059 0.941 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.904 -5.613 10.659 13.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.194 5.194 2 C -0.065 4.065 3 C 0.128 3.872 4 N -0.294 5.294 5 C -0.388 4.388 6 H 0.102 0.898 7 C -0.197 4.197 8 N -0.547 5.547 9 Si 0.735 3.265 10 H -0.202 1.202 11 H -0.220 1.220 12 H -0.215 1.215 13 C 0.118 3.882 14 C -0.158 4.158 15 C -0.102 4.102 16 C -0.142 4.142 17 C -0.104 4.104 18 C -0.142 4.142 19 C -0.106 4.106 20 C -0.142 4.142 21 C -0.132 4.132 22 C -0.158 4.158 23 H 0.073 0.927 24 H 0.125 0.875 25 H 0.068 0.932 26 H 0.082 0.918 27 H 0.075 0.925 28 H 0.080 0.920 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.077 0.923 32 H 0.077 0.923 33 H 0.071 0.929 34 H 0.081 0.919 35 H 0.071 0.929 36 H 0.078 0.922 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.183 -5.519 10.487 12.934 hybrid contribution 0.507 -0.032 -1.162 1.268 sum 5.690 -5.551 9.325 12.253 Atomic orbital electron populations 1.80799 1.14477 1.10244 1.13897 1.30457 0.96316 0.91073 0.88643 1.18198 0.80569 0.88989 0.99440 1.44173 1.74216 1.06877 1.04156 1.19379 1.23516 1.14297 0.81613 0.89754 1.24943 0.96171 1.00578 0.97964 1.69872 1.21064 1.33150 1.30599 0.86187 0.78988 0.77437 0.83934 1.20229 1.22019 1.21528 1.19658 0.91822 0.89307 0.87364 1.21984 1.00479 0.97643 0.95680 1.21040 0.96183 0.95804 0.97159 1.21515 0.95362 1.00261 0.97091 1.21050 0.97697 0.95460 0.96156 1.21512 0.96760 0.96550 0.99417 1.21125 0.95052 0.98451 0.95987 1.21516 0.98361 0.96377 0.97938 1.21586 1.01567 0.93908 0.96135 1.22042 0.99308 0.97946 0.96490 0.92665 0.87451 0.93238 0.91769 0.92527 0.92021 0.92405 0.92804 0.92306 0.92292 0.92874 0.91892 0.92864 0.92181 0.91448 0.91610 0.92893 0.92272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -13.29 18.54 42.16 0.78 -12.51 16 2 C 0.25 6.11 11.35 -20.76 -0.24 5.88 16 3 C 0.26 5.56 5.04 -6.83 -0.03 5.52 16 4 N -0.57 -12.61 2.46 -161.67 -0.40 -13.00 16 5 C -0.26 -6.31 8.72 -15.06 -0.13 -6.44 16 6 H 0.08 2.01 5.88 -52.49 -0.31 1.70 16 7 C 0.00 0.05 4.89 -17.43 -0.09 -0.04 16 8 N -0.90 -24.69 9.43 55.49 0.52 -24.16 16 9 Si 0.90 20.67 29.60 -169.99 -5.03 15.64 16 10 H -0.28 -6.16 7.11 56.52 0.40 -5.75 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.21 3.79 0.86 -131.81 -0.11 3.67 16 14 C -0.12 -1.86 4.44 -26.73 -0.12 -1.98 16 15 C -0.08 -1.10 3.20 -90.62 -0.29 -1.39 16 16 C -0.10 -1.38 5.19 -26.73 -0.14 -1.52 16 17 C -0.08 -1.27 3.19 -90.64 -0.29 -1.56 16 18 C -0.10 -1.47 5.19 -26.73 -0.14 -1.61 16 19 C -0.09 -1.23 3.19 -90.62 -0.29 -1.52 16 20 C -0.10 -1.33 5.19 -26.73 -0.14 -1.46 16 21 C -0.09 -1.65 3.17 -26.73 -0.08 -1.73 16 22 C -0.12 -2.19 3.77 -26.76 -0.10 -2.29 16 23 H 0.06 1.00 6.46 -51.93 -0.34 0.67 16 24 H 0.11 2.48 6.58 -51.93 -0.34 2.14 16 25 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 26 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 27 H 0.06 0.88 6.70 -51.93 -0.35 0.53 16 28 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.07 1.33 7.72 -51.93 -0.40 0.92 16 38 H 0.07 1.17 7.17 -51.93 -0.37 0.80 16 39 H 0.05 1.04 6.62 -51.93 -0.34 0.69 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 293.75 15.07 4.43 4.43 Total: -1.00 -28.05 293.75 -8.12 -36.17 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.24 Total: -0.10 kcal Atomic # 6 Polarization: -4.27 SS G_CDS: -2.19 Total: -6.46 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: 0.91 Total: -49.68 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.03 Total: 15.64 kcal Total LS contribution 4.43 Total: 4.43 kcal Total: -28.05 -8.12 -36.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615946286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.980 kcal (2) G-P(sol) polarization free energy of solvation -28.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.122 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.169 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds