Wall clock time and date at job start Mon Mar 30 2020 06:33:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13605 * 1 3 3 C 1.47201 * 179.97438 * 2 1 4 4 N 1.46497 * 109.46882 * 10.57177 * 3 2 1 5 5 C 1.36932 * 120.00476 * 95.74581 * 4 3 2 6 6 H 1.07997 * 120.00489 * 160.16405 * 5 4 3 7 7 C 1.38816 * 119.99498 * 339.89163 * 5 4 3 8 8 N 1.31618 * 119.99939 * 340.59746 * 7 5 4 9 9 Si 1.86798 * 119.99927 * 160.60273 * 7 5 4 10 10 H 1.48497 * 109.47219 * 359.97438 * 9 7 5 11 11 H 1.48498 * 109.47304 * 119.99844 * 9 7 5 12 12 H 1.48510 * 109.46828 * 239.99751 * 9 7 5 13 13 C 1.46504 * 119.99862 * 275.74365 * 4 3 2 14 14 C 1.53005 * 109.46924 * 299.99877 * 13 4 3 15 15 C 1.53006 * 109.47004 * 179.97438 * 14 13 4 16 16 C 1.52994 * 109.47281 * 300.00591 * 15 14 13 17 17 C 1.53005 * 109.47584 * 59.99764 * 16 15 14 18 18 C 1.52996 * 109.47065 * 59.99825 * 17 16 15 19 19 C 1.52999 * 109.47398 * 300.00487 * 18 17 16 20 20 C 1.53005 * 109.47410 * 59.99724 * 19 18 17 21 21 C 1.52996 * 109.47040 * 299.99761 * 19 18 17 22 22 C 1.52994 * 109.47255 * 60.00403 * 13 4 3 23 23 H 1.08998 * 109.47031 * 250.57451 * 3 2 1 24 24 H 1.09001 * 109.46929 * 130.57048 * 3 2 1 25 25 H 0.97004 * 119.99647 * 180.02562 * 8 7 5 26 26 H 1.08993 * 109.47317 * 299.99982 * 14 13 4 27 27 H 1.09000 * 109.46843 * 60.00286 * 14 13 4 28 28 H 1.08992 * 109.47288 * 180.02562 * 15 14 13 29 29 H 1.09000 * 109.46999 * 299.99898 * 16 15 14 30 30 H 1.08994 * 109.47300 * 180.02562 * 16 15 14 31 31 H 1.08993 * 109.47317 * 180.02562 * 17 16 15 32 32 H 1.09004 * 109.47541 * 180.02562 * 18 17 16 33 33 H 1.09006 * 109.46940 * 60.00341 * 18 17 16 34 34 H 1.09000 * 109.47335 * 179.97438 * 19 18 17 35 35 H 1.09003 * 109.47174 * 59.99635 * 20 19 18 36 36 H 1.08993 * 109.47317 * 179.97438 * 20 19 18 37 37 H 1.09001 * 109.47150 * 300.00151 * 21 19 18 38 38 H 1.09006 * 109.47319 * 179.97438 * 21 19 18 39 39 H 1.09000 * 109.46999 * 300.00012 * 22 13 4 40 40 H 1.09001 * 109.47446 * 59.99766 * 22 13 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 7 3.0969 -1.3569 -0.2534 5 6 3.4373 -1.7360 -1.5244 6 1 4.0819 -2.5885 -1.6794 7 6 2.9490 -1.0279 -2.6140 8 7 1.8888 -0.2600 -2.4783 9 14 3.7968 -1.1651 -4.2729 10 1 4.9572 -2.0849 -4.1612 11 1 2.8388 -1.6955 -5.2760 12 1 4.2686 0.1767 -4.7001 13 6 3.2218 -2.3089 0.8531 14 6 4.1946 -1.7543 1.8957 15 6 4.3245 -2.7483 3.0517 16 6 2.9537 -2.9629 3.6963 17 6 1.9809 -3.5175 2.6537 18 6 2.5089 -4.8515 2.1222 19 6 3.8798 -4.6370 1.4775 20 6 4.8526 -4.0823 2.5201 21 6 3.7499 -3.6430 0.3217 22 6 1.8511 -2.5241 1.4979 23 1 2.9712 0.3426 0.9692 24 1 2.9711 0.6692 -0.7806 25 1 1.5474 0.2345 -3.2398 26 1 5.1710 -1.6011 1.4364 27 1 3.8181 -0.8042 2.2747 28 1 5.0171 -2.3531 3.7946 29 1 2.5774 -2.0125 4.0749 30 1 3.0463 -3.6706 4.5200 31 1 1.0042 -3.6700 3.1128 32 1 1.8162 -5.2464 1.3790 33 1 2.6015 -5.5596 2.9457 34 1 4.2562 -5.5874 1.0992 35 1 4.9451 -4.7904 3.3437 36 1 5.8293 -3.9300 2.0610 37 1 3.0569 -4.0381 -0.4211 38 1 4.7266 -3.4898 -0.1374 39 1 1.4747 -1.5740 1.8768 40 1 1.1581 -2.9192 0.7551 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001615946286.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:47 Heat of formation + Delta-G solvation = 14.655012 kcal Electronic energy + Delta-G solvation = -21212.212389 eV Core-core repulsion = 18411.630391 eV Total energy + Delta-G solvation = -2800.581999 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.23101 -37.98764 -36.14524 -33.78053 -33.42387 -33.35144 -31.12418 -28.83429 -26.65598 -26.41010 -25.12590 -22.20650 -22.17303 -21.18214 -18.93333 -18.45008 -17.65130 -16.94276 -15.80538 -15.63948 -15.24938 -15.20736 -15.03518 -14.60341 -14.33603 -14.08056 -13.85633 -13.71212 -13.50890 -13.18691 -13.15578 -13.09037 -12.85472 -12.72020 -12.16867 -12.03133 -11.88303 -11.75327 -11.60132 -11.50723 -11.40893 -11.30948 -10.76947 -10.67871 -10.39083 -10.30312 -8.89829 -7.87780 -5.26210 1.48726 1.53259 1.61323 2.30925 2.52981 2.62946 3.31405 3.54867 3.73770 3.77783 3.96071 4.09978 4.33113 4.38118 4.45089 4.49346 4.53704 4.57453 4.58655 4.60820 4.79154 4.88660 4.96421 5.00455 5.04042 5.12443 5.24798 5.25345 5.27868 5.30261 5.34614 5.35072 5.47508 5.50458 5.58704 5.69476 5.76576 5.79662 5.89084 6.33820 7.10522 7.36387 7.85192 8.26521 9.18789 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.023481 B = 0.008617 C = 0.007300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.162389 B = 3248.468024 C = 3834.490248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C 0.265 3.735 3 C 0.259 3.741 4 N -0.585 5.585 5 C -0.246 4.246 6 H 0.089 0.911 7 C -0.051 4.051 8 N -0.935 5.935 9 Si 0.961 3.039 10 H -0.263 1.263 11 H -0.310 1.310 12 H -0.291 1.291 13 C 0.197 3.803 14 C -0.113 4.113 15 C -0.080 4.080 16 C -0.101 4.101 17 C -0.084 4.084 18 C -0.103 4.103 19 C -0.084 4.084 20 C -0.100 4.100 21 C -0.091 4.091 22 C -0.109 4.109 23 H 0.096 0.904 24 H 0.093 0.907 25 H 0.245 0.755 26 H 0.063 0.937 27 H 0.057 0.943 28 H 0.089 0.911 29 H 0.057 0.943 30 H 0.082 0.918 31 H 0.060 0.940 32 H 0.040 0.960 33 H 0.084 0.916 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.065 0.935 37 H 0.031 0.969 38 H 0.060 0.940 39 H 0.037 0.963 40 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.300 -6.937 13.198 17.573 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.235 5.235 2 C -0.052 4.052 3 C 0.128 3.872 4 N -0.305 5.305 5 C -0.376 4.376 6 H 0.107 0.893 7 C -0.245 4.245 8 N -0.582 5.582 9 Si 0.791 3.209 10 H -0.187 1.187 11 H -0.238 1.238 12 H -0.218 1.218 13 C 0.111 3.889 14 C -0.152 4.152 15 C -0.098 4.098 16 C -0.138 4.138 17 C -0.103 4.103 18 C -0.141 4.141 19 C -0.102 4.102 20 C -0.138 4.138 21 C -0.129 4.129 22 C -0.149 4.149 23 H 0.113 0.887 24 H 0.110 0.890 25 H 0.055 0.945 26 H 0.082 0.918 27 H 0.076 0.924 28 H 0.108 0.892 29 H 0.076 0.924 30 H 0.101 0.899 31 H 0.079 0.921 32 H 0.058 0.942 33 H 0.102 0.898 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.084 0.916 37 H 0.050 0.950 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 7.614 -6.869 13.055 16.601 hybrid contribution -0.263 0.325 -1.945 1.989 sum 7.350 -6.545 11.111 14.843 Atomic orbital electron populations 1.80776 1.15771 1.11612 1.15370 1.31086 0.96891 0.89864 0.87391 1.18384 0.78990 0.88885 1.00897 1.44474 1.73682 1.07835 1.04492 1.19677 1.21993 1.13241 0.82703 0.89320 1.25540 0.96940 1.01354 1.00685 1.70021 1.22778 1.34839 1.30549 0.85295 0.78045 0.77196 0.80387 1.18714 1.23830 1.21807 1.19966 0.92536 0.89260 0.87150 1.21906 0.99136 0.98498 0.95689 1.21074 0.96872 0.95420 0.96476 1.21512 0.94429 1.00940 0.96911 1.21064 0.98945 0.95030 0.95267 1.21516 0.96179 0.96439 0.99942 1.21121 0.95866 0.98041 0.95213 1.21519 0.97725 0.96452 0.98066 1.21529 1.00010 0.94381 0.97006 1.21905 0.98139 0.98043 0.96787 0.88678 0.88955 0.94499 0.91814 0.92396 0.89228 0.92412 0.89936 0.92130 0.94156 0.89781 0.90446 0.90053 0.91614 0.95014 0.92119 0.94462 0.97034 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -29.67 18.54 20.01 0.37 -29.30 16 2 C 0.27 13.15 11.35 89.44 1.02 14.16 16 3 C 0.26 11.22 5.04 84.57 0.43 11.65 16 4 N -0.59 -25.85 2.46 -665.40 -1.64 -27.49 16 5 C -0.25 -12.13 8.72 84.04 0.73 -11.39 16 6 H 0.09 4.24 5.88 -2.91 -0.02 4.22 16 7 C -0.05 -2.64 4.89 84.86 0.42 -2.23 16 8 N -0.93 -52.89 9.43 21.65 0.20 -52.69 16 9 Si 0.96 43.41 29.60 68.60 2.03 45.44 16 10 H -0.26 -11.11 7.11 99.48 0.71 -10.40 16 11 H -0.31 -14.77 7.11 99.48 0.71 -14.06 16 12 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 13 C 0.20 7.12 0.86 3.60 0.00 7.12 16 14 C -0.11 -3.24 4.44 30.60 0.14 -3.10 16 15 C -0.08 -1.73 3.20 -10.79 -0.03 -1.77 16 16 C -0.10 -2.22 5.19 30.59 0.16 -2.06 16 17 C -0.08 -2.35 3.19 -10.81 -0.03 -2.38 16 18 C -0.10 -2.63 5.19 30.59 0.16 -2.47 16 19 C -0.08 -2.12 3.19 -10.79 -0.03 -2.16 16 20 C -0.10 -2.04 5.19 30.60 0.16 -1.89 16 21 C -0.09 -3.13 3.17 30.60 0.10 -3.03 16 22 C -0.11 -4.07 3.77 30.58 0.12 -3.96 16 23 H 0.10 3.34 6.46 -2.39 -0.02 3.33 16 24 H 0.09 4.35 6.58 -2.39 -0.02 4.33 16 25 H 0.25 14.03 8.31 -92.71 -0.77 13.26 16 26 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.06 1.63 6.70 -2.39 -0.02 1.61 16 28 H 0.09 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 31 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 32 H 0.04 1.16 8.14 -2.39 -0.02 1.14 16 33 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.08 1.77 8.14 -2.39 -0.02 1.76 16 35 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 36 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.03 1.27 7.72 -2.39 -0.02 1.26 16 38 H 0.06 2.10 7.17 -2.38 -0.02 2.09 16 39 H 0.04 1.47 6.62 -2.39 -0.02 1.45 16 40 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -62.91 293.75 5.30 -57.60 By element: Atomic # 1 Polarization: 8.92 SS G_CDS: 1.02 Total: 9.94 kcal Atomic # 6 Polarization: -6.82 SS G_CDS: 3.31 Total: -3.51 kcal Atomic # 7 Polarization: -108.41 SS G_CDS: -1.06 Total: -109.47 kcal Atomic # 14 Polarization: 43.41 SS G_CDS: 2.03 Total: 45.44 kcal Total: -62.91 5.30 -57.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615946286.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.259 kcal (2) G-P(sol) polarization free energy of solvation -62.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.604 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds