Wall clock time and date at job start Mon Mar 30 2020 06:33:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47165 * 48.59287 * 3 2 1 5 5 C 1.36941 * 119.99960 * 96.35744 * 4 3 2 6 6 H 1.08001 * 120.00057 * 152.67729 * 5 4 3 7 7 C 1.38813 * 120.00098 * 332.67507 * 5 4 3 8 8 N 1.31613 * 119.99792 * 351.04508 * 7 5 4 9 9 Si 1.86792 * 119.99984 * 171.04259 * 7 5 4 10 10 H 1.48501 * 109.46999 * 60.00067 * 9 7 5 11 11 H 1.48502 * 109.47172 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47240 * 300.00224 * 9 7 5 13 13 C 1.46501 * 120.00240 * 276.08263 * 4 3 2 14 14 C 1.52999 * 109.47569 * 174.76318 * 13 4 3 15 15 C 1.53001 * 109.46828 * 300.00084 * 14 13 4 16 16 C 1.52998 * 109.47123 * 299.99720 * 15 14 13 17 17 C 1.53001 * 109.47167 * 300.00041 * 16 15 14 18 18 C 1.53006 * 109.46812 * 59.99967 * 17 16 15 19 19 C 1.52995 * 109.47295 * 179.97438 * 14 13 4 20 20 C 1.53002 * 109.46807 * 60.00398 * 18 17 16 21 21 C 1.52998 * 109.47058 * 54.76184 * 13 4 3 22 22 C 1.52999 * 109.47040 * 60.00409 * 16 15 14 23 23 H 1.08998 * 109.46799 * 288.59108 * 3 2 1 24 24 H 1.08995 * 109.46982 * 168.59515 * 3 2 1 25 25 H 0.96999 * 119.99942 * 180.02562 * 8 7 5 26 26 H 1.08999 * 109.46750 * 294.76945 * 13 4 3 27 27 H 1.09007 * 109.46706 * 59.99541 * 14 13 4 28 28 H 1.09002 * 109.47001 * 60.00201 * 15 14 13 29 29 H 1.09004 * 109.47029 * 179.97438 * 15 14 13 30 30 H 1.09006 * 109.47129 * 180.02562 * 16 15 14 31 31 H 1.08996 * 109.47152 * 299.99960 * 17 16 15 32 32 H 1.09003 * 109.46886 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.46680 * 179.97438 * 18 17 16 34 34 H 1.08997 * 109.47012 * 300.00098 * 19 14 13 35 35 H 1.08996 * 109.47005 * 179.97438 * 19 14 13 36 36 H 1.08997 * 109.46987 * 179.97438 * 20 18 17 37 37 H 1.08995 * 109.47366 * 59.99370 * 20 18 17 38 38 H 1.09005 * 109.47428 * 300.00571 * 21 13 4 39 39 H 1.09001 * 109.47136 * 180.02562 * 22 16 15 40 40 H 1.08994 * 109.47434 * 60.00070 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9126 -1.0359 5 6 3.4486 -0.4265 -2.2668 6 1 4.1864 -0.9447 -2.8614 7 6 2.8569 0.7324 -2.7504 8 7 1.8368 1.2660 -2.1125 9 14 3.5084 1.5344 -4.3065 10 1 3.4022 0.5783 -5.4379 11 1 2.7095 2.7492 -4.6091 12 1 4.9308 1.9129 -4.1101 13 6 3.2148 -2.3452 -0.7531 14 6 3.6191 -3.0855 -2.0296 15 6 2.5547 -2.8642 -3.1062 16 6 1.2094 -3.3989 -2.6109 17 6 1.3327 -4.8950 -2.3155 18 6 2.3972 -5.1162 -1.2389 19 6 3.7430 -4.5815 -1.7341 20 6 1.9928 -4.3760 0.0376 21 6 1.8696 -2.8799 -0.2578 22 6 0.8052 -2.6586 -1.3344 23 1 2.9714 -0.3268 0.9740 24 1 2.9709 1.0082 -0.2032 25 1 1.4231 2.0756 -2.4506 26 1 3.9730 -2.5028 0.0139 27 1 4.5775 -2.7045 -2.3825 28 1 2.4669 -1.7983 -3.3167 29 1 2.8428 -3.3913 -4.0158 30 1 0.4512 -3.2416 -3.3781 31 1 1.6207 -5.4224 -3.2250 32 1 0.3742 -5.2760 -1.9631 33 1 2.4847 -6.1821 -1.0282 34 1 4.5014 -4.7388 -0.9673 35 1 4.0305 -5.1089 -2.6436 36 1 2.7509 -4.5340 0.8047 37 1 1.0345 -4.7569 0.3904 38 1 1.5815 -2.3525 0.6516 39 1 -0.1530 -3.0398 -0.9813 40 1 0.7173 -1.5927 -1.5448 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001615948390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:51 Heat of formation + Delta-G solvation = 36.560776 kcal Electronic energy + Delta-G solvation = -21674.217206 eV Core-core repulsion = 18874.585113 eV Total energy + Delta-G solvation = -2799.632093 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -40.86211 -36.16032 -34.27181 -32.17291 -31.88388 -31.77446 -29.95749 -26.83275 -25.45490 -24.96311 -22.41555 -20.76681 -20.73048 -20.10336 -17.18648 -16.98544 -15.88142 -15.06261 -14.52773 -13.97922 -13.83107 -13.72888 -13.59416 -13.15486 -12.67767 -12.38725 -12.19966 -11.99528 -11.84633 -11.77790 -11.52924 -11.21997 -11.07896 -10.87146 -10.51639 -10.44523 -10.34386 -10.23315 -10.14756 -9.99056 -9.79664 -9.65197 -9.11719 -8.97389 -8.86379 -8.45900 -6.92478 -5.92527 -3.37923 3.32512 3.38988 3.40497 4.21321 4.43342 4.57849 5.06775 5.08651 5.12081 5.30633 5.56900 5.72653 5.75365 5.80308 5.83847 5.87522 5.90057 5.92415 6.00519 6.04850 6.17852 6.29618 6.41513 6.46125 6.48628 6.48846 6.51439 6.57592 6.68939 6.71095 6.76894 6.79768 7.08017 7.20523 7.21966 7.24760 7.39317 7.60734 7.71871 8.25311 9.02966 9.32085 9.65089 10.14938 11.14724 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.010313 C = 0.008599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.985661 B = 2714.437059 C = 3255.302248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.513 5.513 2 C 0.258 3.742 3 C 0.261 3.739 4 N -0.579 5.579 5 C -0.250 4.250 6 H 0.081 0.919 7 C 0.006 3.994 8 N -0.904 5.904 9 Si 0.904 3.096 10 H -0.282 1.282 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.186 3.814 14 C -0.071 4.071 15 C -0.122 4.122 16 C -0.078 4.078 17 C -0.106 4.106 18 C -0.082 4.082 19 C -0.107 4.107 20 C -0.104 4.104 21 C -0.100 4.100 22 C -0.101 4.101 23 H 0.051 0.949 24 H 0.108 0.892 25 H 0.260 0.740 26 H 0.032 0.968 27 H 0.069 0.931 28 H 0.118 0.882 29 H 0.034 0.966 30 H 0.052 0.948 31 H 0.051 0.949 32 H 0.049 0.951 33 H 0.056 0.944 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.054 0.946 37 H 0.051 0.949 38 H 0.056 0.944 39 H 0.033 0.967 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.286 -9.329 2.127 10.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.194 5.194 2 C -0.060 4.060 3 C 0.131 3.869 4 N -0.300 5.300 5 C -0.379 4.379 6 H 0.098 0.902 7 C -0.193 4.193 8 N -0.548 5.548 9 Si 0.734 3.266 10 H -0.208 1.208 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.079 3.921 14 C -0.089 4.089 15 C -0.159 4.159 16 C -0.096 4.096 17 C -0.144 4.144 18 C -0.100 4.100 19 C -0.145 4.145 20 C -0.142 4.142 21 C -0.120 4.120 22 C -0.139 4.139 23 H 0.069 0.931 24 H 0.126 0.874 25 H 0.071 0.929 26 H 0.050 0.950 27 H 0.088 0.912 28 H 0.136 0.864 29 H 0.053 0.947 30 H 0.070 0.930 31 H 0.070 0.930 32 H 0.068 0.932 33 H 0.075 0.925 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.069 0.931 38 H 0.075 0.925 39 H 0.052 0.948 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges 2.553 -9.162 2.061 9.732 hybrid contribution 0.433 0.424 -1.003 1.172 sum 2.986 -8.739 1.058 9.295 Atomic orbital electron populations 1.80817 1.14392 1.11565 1.12669 1.30281 0.96258 0.90186 0.89308 1.18101 0.80728 0.97582 0.90526 1.44004 1.74691 1.00130 1.11188 1.19101 1.16997 1.07381 0.94418 0.90171 1.25092 0.96083 0.99873 0.98260 1.69667 1.22254 1.22301 1.40534 0.86328 0.78212 0.78861 0.83178 1.20833 1.21752 1.20850 1.20478 0.93117 0.83913 0.94551 1.20983 0.99165 0.92655 0.96118 1.21983 0.92904 1.05521 0.95491 1.20939 0.97907 0.93396 0.97406 1.21560 0.97774 0.97302 0.97755 1.21009 0.95539 0.98007 0.95493 1.21570 0.96113 0.96817 0.99980 1.21500 1.00116 0.96106 0.96472 1.21549 0.98120 0.94122 0.98244 1.21524 0.95494 1.02929 0.93927 0.93124 0.87442 0.92930 0.94986 0.91247 0.86413 0.94676 0.92955 0.93024 0.93230 0.92537 0.92705 0.92718 0.92708 0.93056 0.92513 0.94823 0.88791 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.51 -12.75 17.73 42.15 0.75 -12.00 16 2 C 0.26 5.96 9.23 -20.76 -0.19 5.76 16 3 C 0.26 5.44 5.05 -6.83 -0.03 5.41 16 4 N -0.58 -12.30 2.10 -168.98 -0.35 -12.66 16 5 C -0.25 -5.76 6.00 -15.06 -0.09 -5.85 16 6 H 0.08 1.82 5.76 -52.49 -0.30 1.52 16 7 C 0.01 0.14 5.05 -17.43 -0.09 0.05 16 8 N -0.90 -23.56 9.18 55.49 0.51 -23.05 16 9 Si 0.90 20.11 29.56 -169.99 -5.03 15.09 16 10 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 11 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 13 C 0.19 3.45 2.60 -67.93 -0.18 3.27 16 14 C -0.07 -1.24 2.18 -90.62 -0.20 -1.43 16 15 C -0.12 -2.33 4.69 -26.73 -0.13 -2.45 16 16 C -0.08 -1.44 3.19 -90.62 -0.29 -1.73 16 17 C -0.11 -1.65 5.19 -26.73 -0.14 -1.79 16 18 C -0.08 -1.20 3.20 -90.59 -0.29 -1.49 16 19 C -0.11 -1.57 5.20 -26.71 -0.14 -1.71 16 20 C -0.10 -1.60 5.19 -26.73 -0.14 -1.73 16 21 C -0.10 -1.82 2.16 -90.62 -0.20 -2.02 16 22 C -0.10 -2.06 4.48 -26.73 -0.12 -2.17 16 23 H 0.05 0.90 8.12 -51.93 -0.42 0.47 16 24 H 0.11 2.39 6.75 -51.93 -0.35 2.04 16 25 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.15 16 27 H 0.07 1.25 6.90 -51.93 -0.36 0.89 16 28 H 0.12 2.67 4.83 -51.93 -0.25 2.42 16 29 H 0.03 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 31 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.05 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 36 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 37 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.06 1.10 6.66 -51.93 -0.35 0.75 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.09 2.29 4.94 -51.93 -0.26 2.03 16 LS Contribution 285.15 15.07 4.30 4.30 Total: -1.00 -25.97 285.15 -8.11 -34.08 By element: Atomic # 1 Polarization: 8.21 SS G_CDS: -6.07 Total: 2.14 kcal Atomic # 6 Polarization: -5.68 SS G_CDS: -2.21 Total: -7.89 kcal Atomic # 7 Polarization: -48.61 SS G_CDS: 0.90 Total: -47.71 kcal Atomic # 14 Polarization: 20.11 SS G_CDS: -5.03 Total: 15.09 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -25.97 -8.11 -34.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615948390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.642 kcal (2) G-P(sol) polarization free energy of solvation -25.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.112 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.081 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds