Wall clock time and date at job start Mon Mar 30 2020 06:33:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13604 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46495 * 109.47165 * 48.59287 * 3 2 1 5 5 C 1.36941 * 119.99960 * 96.35744 * 4 3 2 6 6 H 1.08001 * 120.00057 * 152.67729 * 5 4 3 7 7 C 1.38813 * 120.00098 * 332.67507 * 5 4 3 8 8 N 1.31613 * 119.99792 * 351.04508 * 7 5 4 9 9 Si 1.86792 * 119.99984 * 171.04259 * 7 5 4 10 10 H 1.48501 * 109.46999 * 60.00067 * 9 7 5 11 11 H 1.48502 * 109.47172 * 179.97438 * 9 7 5 12 12 H 1.48499 * 109.47240 * 300.00224 * 9 7 5 13 13 C 1.46501 * 120.00240 * 276.08263 * 4 3 2 14 14 C 1.52999 * 109.47569 * 174.76318 * 13 4 3 15 15 C 1.53001 * 109.46828 * 300.00084 * 14 13 4 16 16 C 1.52998 * 109.47123 * 299.99720 * 15 14 13 17 17 C 1.53001 * 109.47167 * 300.00041 * 16 15 14 18 18 C 1.53006 * 109.46812 * 59.99967 * 17 16 15 19 19 C 1.52995 * 109.47295 * 179.97438 * 14 13 4 20 20 C 1.53002 * 109.46807 * 60.00398 * 18 17 16 21 21 C 1.52998 * 109.47058 * 54.76184 * 13 4 3 22 22 C 1.52999 * 109.47040 * 60.00409 * 16 15 14 23 23 H 1.08998 * 109.46799 * 288.59108 * 3 2 1 24 24 H 1.08995 * 109.46982 * 168.59515 * 3 2 1 25 25 H 0.96999 * 119.99942 * 180.02562 * 8 7 5 26 26 H 1.08999 * 109.46750 * 294.76945 * 13 4 3 27 27 H 1.09007 * 109.46706 * 59.99541 * 14 13 4 28 28 H 1.09002 * 109.47001 * 60.00201 * 15 14 13 29 29 H 1.09004 * 109.47029 * 179.97438 * 15 14 13 30 30 H 1.09006 * 109.47129 * 180.02562 * 16 15 14 31 31 H 1.08996 * 109.47152 * 299.99960 * 17 16 15 32 32 H 1.09003 * 109.46886 * 180.02562 * 17 16 15 33 33 H 1.09002 * 109.46680 * 179.97438 * 18 17 16 34 34 H 1.08997 * 109.47012 * 300.00098 * 19 14 13 35 35 H 1.08996 * 109.47005 * 179.97438 * 19 14 13 36 36 H 1.08997 * 109.46987 * 179.97438 * 20 18 17 37 37 H 1.08995 * 109.47366 * 59.99370 * 20 18 17 38 38 H 1.09005 * 109.47428 * 300.00571 * 21 13 4 39 39 H 1.09001 * 109.47136 * 180.02562 * 22 16 15 40 40 H 1.08994 * 109.47434 * 60.00070 * 22 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 7 3.0968 -0.9126 -1.0359 5 6 3.4486 -0.4265 -2.2668 6 1 4.1864 -0.9447 -2.8614 7 6 2.8569 0.7324 -2.7504 8 7 1.8368 1.2660 -2.1125 9 14 3.5084 1.5344 -4.3065 10 1 3.4022 0.5783 -5.4379 11 1 2.7095 2.7492 -4.6091 12 1 4.9308 1.9129 -4.1101 13 6 3.2148 -2.3452 -0.7531 14 6 3.6191 -3.0855 -2.0296 15 6 2.5547 -2.8642 -3.1062 16 6 1.2094 -3.3989 -2.6109 17 6 1.3327 -4.8950 -2.3155 18 6 2.3972 -5.1162 -1.2389 19 6 3.7430 -4.5815 -1.7341 20 6 1.9928 -4.3760 0.0376 21 6 1.8696 -2.8799 -0.2578 22 6 0.8052 -2.6586 -1.3344 23 1 2.9714 -0.3268 0.9740 24 1 2.9709 1.0082 -0.2032 25 1 1.4231 2.0756 -2.4506 26 1 3.9730 -2.5028 0.0139 27 1 4.5775 -2.7045 -2.3825 28 1 2.4669 -1.7983 -3.3167 29 1 2.8428 -3.3913 -4.0158 30 1 0.4512 -3.2416 -3.3781 31 1 1.6207 -5.4224 -3.2250 32 1 0.3742 -5.2760 -1.9631 33 1 2.4847 -6.1821 -1.0282 34 1 4.5014 -4.7388 -0.9673 35 1 4.0305 -5.1089 -2.6436 36 1 2.7509 -4.5340 0.8047 37 1 1.0345 -4.7569 0.3904 38 1 1.5815 -2.3525 0.6516 39 1 -0.1530 -3.0398 -0.9813 40 1 0.7173 -1.5927 -1.5448 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001615948390.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:33:50 Heat of formation + Delta-G solvation = 24.270055 kcal Electronic energy + Delta-G solvation = -21674.750171 eV Core-core repulsion = 18874.585113 eV Total energy + Delta-G solvation = -2800.165059 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.26694 -37.83825 -36.08327 -33.75417 -33.31577 -33.22483 -31.53556 -28.54349 -26.95763 -26.40130 -24.02731 -22.19074 -22.10927 -21.51645 -18.91801 -18.48549 -17.62875 -16.74446 -15.91841 -15.65063 -15.34260 -15.29263 -15.03253 -14.51956 -14.08398 -13.93198 -13.68013 -13.58329 -13.38064 -13.31564 -13.03772 -12.89817 -12.84500 -12.62978 -12.20750 -12.07222 -11.86213 -11.66600 -11.58032 -11.48992 -11.47350 -11.23480 -10.62293 -10.38345 -10.28946 -10.16860 -8.68542 -7.81036 -5.23941 1.52278 1.54972 1.58738 2.43094 2.60896 2.74506 3.39644 3.67656 3.78744 3.80752 4.06484 4.08167 4.41259 4.42933 4.50293 4.55230 4.56327 4.60021 4.64728 4.72839 4.80253 4.94325 5.00378 5.08049 5.09698 5.15336 5.24880 5.27465 5.31797 5.34665 5.37655 5.38518 5.42293 5.69402 5.76142 5.79517 5.80886 5.88464 6.04361 6.42640 7.18540 7.50295 7.88581 8.33071 9.24231 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.022252 B = 0.010313 C = 0.008599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1257.985661 B = 2714.437059 C = 3255.302248 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.553 5.553 2 C 0.271 3.729 3 C 0.259 3.741 4 N -0.587 5.587 5 C -0.224 4.224 6 H 0.087 0.913 7 C -0.043 4.043 8 N -0.932 5.932 9 Si 0.951 3.049 10 H -0.284 1.284 11 H -0.311 1.311 12 H -0.273 1.273 13 C 0.180 3.820 14 C -0.069 4.069 15 C -0.119 4.119 16 C -0.079 4.079 17 C -0.101 4.101 18 C -0.079 4.079 19 C -0.100 4.100 20 C -0.100 4.100 21 C -0.095 4.095 22 C -0.096 4.096 23 H 0.091 0.909 24 H 0.093 0.907 25 H 0.243 0.757 26 H 0.054 0.946 27 H 0.065 0.935 28 H 0.076 0.924 29 H 0.047 0.953 30 H 0.033 0.967 31 H 0.067 0.933 32 H 0.053 0.947 33 H 0.089 0.911 34 H 0.076 0.924 35 H 0.069 0.931 36 H 0.078 0.922 37 H 0.053 0.947 38 H 0.042 0.958 39 H 0.020 0.980 40 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.372 -12.353 2.776 14.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.235 5.235 2 C -0.046 4.046 3 C 0.129 3.871 4 N -0.308 5.308 5 C -0.354 4.354 6 H 0.104 0.896 7 C -0.238 4.238 8 N -0.579 5.579 9 Si 0.782 3.218 10 H -0.210 1.210 11 H -0.238 1.238 12 H -0.199 1.199 13 C 0.075 3.925 14 C -0.088 4.088 15 C -0.157 4.157 16 C -0.098 4.098 17 C -0.139 4.139 18 C -0.097 4.097 19 C -0.138 4.138 20 C -0.138 4.138 21 C -0.115 4.115 22 C -0.134 4.134 23 H 0.109 0.891 24 H 0.110 0.890 25 H 0.053 0.947 26 H 0.072 0.928 27 H 0.083 0.917 28 H 0.094 0.906 29 H 0.066 0.934 30 H 0.052 0.948 31 H 0.086 0.914 32 H 0.072 0.928 33 H 0.107 0.893 34 H 0.095 0.905 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.072 0.928 38 H 0.060 0.940 39 H 0.039 0.961 40 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 4.672 -12.216 2.711 13.357 hybrid contribution -0.232 1.334 -1.223 1.824 sum 4.441 -10.882 1.488 11.847 Atomic orbital electron populations 1.80794 1.15715 1.12920 1.14108 1.30793 0.96719 0.88977 0.88077 1.18295 0.79305 0.97171 0.92322 1.44233 1.74110 1.01744 1.10689 1.19291 1.15419 1.06100 0.94581 0.89598 1.25551 0.96780 1.01202 1.00237 1.69824 1.23985 1.22306 1.41738 0.85573 0.77743 0.77294 0.81214 1.21041 1.23817 1.19915 1.20718 0.93754 0.82186 0.95864 1.20986 0.97942 0.95180 0.94701 1.21839 0.93968 1.02912 0.96937 1.20922 0.97072 0.95907 0.95896 1.21521 0.98819 0.94354 0.99171 1.21053 0.94735 0.99725 0.94219 1.21540 0.96784 0.93966 1.01492 1.21493 1.01226 0.93313 0.97763 1.21479 0.96855 0.96660 0.96553 1.21390 0.95999 1.00244 0.95796 0.89104 0.88960 0.94681 0.92803 0.91665 0.90609 0.93404 0.94848 0.91447 0.92837 0.89302 0.90519 0.91223 0.90346 0.92800 0.93987 0.96074 0.93277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.55 -28.47 17.73 20.01 0.35 -28.11 16 2 C 0.27 12.83 9.23 89.44 0.83 13.66 16 3 C 0.26 10.74 5.05 84.57 0.43 11.17 16 4 N -0.59 -24.45 2.10 -688.53 -1.45 -25.90 16 5 C -0.22 -10.28 6.00 84.03 0.50 -9.77 16 6 H 0.09 3.82 5.76 -2.91 -0.02 3.81 16 7 C -0.04 -2.14 5.05 84.86 0.43 -1.71 16 8 N -0.93 -50.53 9.18 21.65 0.20 -50.33 16 9 Si 0.95 42.32 29.56 68.60 2.03 44.34 16 10 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 11 H -0.31 -14.73 7.11 99.48 0.71 -14.02 16 12 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 13 C 0.18 6.22 2.60 44.99 0.12 6.34 16 14 C -0.07 -2.22 2.18 -10.80 -0.02 -2.24 16 15 C -0.12 -4.40 4.69 30.59 0.14 -4.26 16 16 C -0.08 -2.88 3.19 -10.79 -0.03 -2.91 16 17 C -0.10 -2.81 5.19 30.60 0.16 -2.65 16 18 C -0.08 -1.90 3.20 -10.78 -0.03 -1.94 16 19 C -0.10 -2.41 5.20 30.61 0.16 -2.25 16 20 C -0.10 -2.65 5.19 30.60 0.16 -2.49 16 21 C -0.10 -3.29 2.16 -10.79 -0.02 -3.31 16 22 C -0.10 -3.93 4.48 30.59 0.14 -3.79 16 23 H 0.09 3.03 8.12 -2.39 -0.02 3.01 16 24 H 0.09 4.16 6.75 -2.39 -0.02 4.14 16 25 H 0.24 13.68 8.31 -92.71 -0.77 12.91 16 26 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 27 H 0.07 2.15 6.90 -2.38 -0.02 2.13 16 28 H 0.08 3.46 4.83 -2.39 -0.01 3.45 16 29 H 0.05 1.61 8.14 -2.38 -0.02 1.59 16 30 H 0.03 1.29 8.14 -2.38 -0.02 1.27 16 31 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 32 H 0.05 1.45 8.14 -2.39 -0.02 1.43 16 33 H 0.09 1.70 8.14 -2.39 -0.02 1.69 16 34 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 36 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 37 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 38 H 0.04 1.56 6.66 -2.38 -0.02 1.55 16 39 H 0.02 0.87 8.14 -2.39 -0.02 0.85 16 40 H 0.05 2.46 4.94 -2.39 -0.01 2.45 16 Total: -1.00 -58.21 285.15 5.11 -53.11 By element: Atomic # 1 Polarization: 12.03 SS G_CDS: 1.03 Total: 13.06 kcal Atomic # 6 Polarization: -9.12 SS G_CDS: 2.95 Total: -6.17 kcal Atomic # 7 Polarization: -103.45 SS G_CDS: -0.89 Total: -104.34 kcal Atomic # 14 Polarization: 42.32 SS G_CDS: 2.03 Total: 44.34 kcal Total: -58.21 5.11 -53.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001615948390.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.376 kcal (2) G-P(sol) polarization free energy of solvation -58.215 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.161 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.109 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.106 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds