Wall clock time and date at job start Mon Mar 30 2020 06:30:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47427 * 2 1 4 4 C 1.50700 * 109.47504 * 239.99437 * 2 1 3 5 5 C 1.38289 * 119.92433 * 196.78685 * 4 2 1 6 6 C 1.38100 * 120.07001 * 179.72599 * 5 4 2 7 7 C 1.38911 * 119.92703 * 0.54781 * 6 5 4 8 8 N 1.39678 * 120.07332 * 179.75091 * 7 6 5 9 9 C 1.38907 * 119.85139 * 359.72248 * 7 6 5 10 10 C 1.38106 * 119.92237 * 0.02562 * 9 7 6 11 11 N 1.46902 * 109.46699 * 119.99594 * 2 1 3 12 12 C 1.46899 * 111.00054 * 291.75333 * 11 2 1 13 13 C 1.50702 * 109.47558 * 201.54603 * 12 11 2 14 14 H 1.08003 * 119.99554 * 5.81312 * 13 12 11 15 15 C 1.37878 * 120.00249 * 185.81809 * 13 12 11 16 16 N 1.31514 * 120.00062 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99851 * 179.97438 * 15 13 12 18 18 H 1.48503 * 109.46984 * 359.97438 * 17 15 13 19 19 H 1.48501 * 109.47262 * 119.99948 * 17 15 13 20 20 H 1.48505 * 109.47047 * 239.99744 * 17 15 13 21 21 C 1.46902 * 111.00117 * 55.70984 * 11 2 1 22 22 C 1.52996 * 117.51654 * 101.36879 * 21 11 2 23 23 C 1.52997 * 60.00069 * 107.48193 * 22 21 11 24 24 H 1.09000 * 109.46300 * 60.00502 * 1 2 3 25 25 H 1.08997 * 109.46979 * 180.02562 * 1 2 3 26 26 H 1.08993 * 109.47229 * 300.00402 * 1 2 3 27 27 H 1.07999 * 119.96272 * 359.97438 * 5 4 2 28 28 H 1.08006 * 120.03515 * 180.26929 * 6 5 4 29 29 H 0.97000 * 119.99717 * 179.97438 * 8 7 6 30 30 H 0.96996 * 120.00437 * 359.97438 * 8 7 6 31 31 H 1.07994 * 120.04015 * 179.97438 * 9 7 6 32 32 H 1.08005 * 119.95790 * 180.02562 * 10 9 7 33 33 H 1.08997 * 109.47507 * 321.54709 * 12 11 2 34 34 H 1.09000 * 109.47234 * 81.54759 * 12 11 2 35 35 H 0.96991 * 119.99899 * 180.02562 * 16 15 13 36 36 H 1.08997 * 115.54961 * 315.66470 * 21 11 2 37 37 H 1.09003 * 117.49688 * 214.97307 * 22 21 11 38 38 H 1.09000 * 117.50392 * 359.97438 * 22 21 11 39 39 H 1.09000 * 117.49333 * 252.50689 * 23 22 21 40 40 H 1.09002 * 117.49848 * 107.49135 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0325 -0.7105 -1.2304 5 6 3.3443 -1.1442 -1.2892 6 6 3.8063 -1.8006 -2.4129 7 6 2.9549 -2.0150 -3.4894 8 7 3.4205 -2.6740 -4.6296 9 6 1.6394 -1.5731 -3.4292 10 6 1.1824 -0.9219 -2.3003 11 7 2.0196 -0.6924 1.1995 12 6 1.7158 0.0779 2.4129 13 6 2.6455 -0.3437 3.5216 14 1 3.4477 -1.0378 3.3189 15 6 2.4719 0.1568 4.7945 16 7 1.4954 1.0024 5.0412 17 14 3.6239 -0.3664 6.1688 18 1 4.6308 -1.3186 5.6352 19 1 4.3141 0.8283 6.7180 20 1 2.8423 -1.0252 7.2460 21 6 1.4666 -2.0506 1.2860 22 6 2.3708 -3.2102 0.8636 23 6 2.0545 -2.9868 2.3437 24 1 -0.3632 0.5138 -0.8901 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 4.0070 -0.9729 -0.4538 28 1 4.8297 -2.1430 -2.4565 29 1 2.8249 -2.8234 -5.3805 30 1 4.3393 -2.9822 -4.6705 31 1 0.9750 -1.7378 -4.2645 32 1 0.1595 -0.5785 -2.2527 33 1 1.8491 1.1407 2.2115 34 1 0.6846 -0.1085 2.7130 35 1 1.3735 1.3547 5.9366 36 1 0.4015 -2.1391 1.0717 37 1 1.9007 -4.0616 0.3713 38 1 3.3763 -2.9655 0.5210 39 1 2.8520 -2.5951 2.9751 40 1 1.3762 -3.6912 2.8253 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042531012.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:20 Heat of formation + Delta-G solvation = 44.544823 kcal Electronic energy + Delta-G solvation = -19815.685520 eV Core-core repulsion = 17016.399641 eV Total energy + Delta-G solvation = -2799.285879 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.73347 -39.06148 -36.18457 -35.16624 -34.23664 -31.89890 -31.21461 -28.50772 -28.20417 -24.70919 -24.02909 -23.30464 -22.85049 -21.98313 -20.04158 -18.72736 -17.87302 -17.48605 -16.78629 -16.67645 -16.23150 -15.55908 -15.30393 -14.97985 -14.70887 -14.25303 -14.09744 -13.96221 -13.80133 -13.56032 -13.22018 -12.90152 -12.73862 -12.60905 -12.41226 -12.25889 -11.91271 -11.61583 -11.42023 -11.27247 -11.13737 -10.89912 -10.61372 -10.47364 -9.62104 -8.87790 -8.18523 -8.10641 -6.18447 0.72693 0.85995 1.41854 1.43007 1.55601 2.44216 3.06085 3.17178 3.19271 3.23656 3.37236 4.02071 4.15131 4.24415 4.30651 4.33365 4.40539 4.45851 4.57169 4.72121 4.74849 4.90852 4.95949 4.97294 5.04705 5.13119 5.21845 5.26069 5.28594 5.38222 5.46779 5.55648 5.57722 5.71989 5.81416 6.06124 6.15824 6.20881 6.53635 6.74920 6.78509 6.97284 7.14398 7.48902 8.98871 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.030473 B = 0.005340 C = 0.005016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 918.616306 B = 5242.511445 C = 5581.268179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.123 3.877 3 H 0.063 0.937 4 C -0.131 4.131 5 C -0.049 4.049 6 C -0.209 4.209 7 C 0.209 3.791 8 N -0.871 5.871 9 C -0.206 4.206 10 C -0.076 4.076 11 N -0.502 5.502 12 C 0.214 3.786 13 C -0.500 4.500 14 H 0.067 0.933 15 C 0.001 3.999 16 N -0.938 5.938 17 Si 0.959 3.041 18 H -0.263 1.263 19 H -0.282 1.282 20 H -0.282 1.282 21 C 0.015 3.985 22 C -0.143 4.143 23 C -0.179 4.179 24 H 0.081 0.919 25 H 0.061 0.939 26 H 0.033 0.967 27 H 0.107 0.893 28 H 0.127 0.873 29 H 0.405 0.595 30 H 0.404 0.596 31 H 0.136 0.864 32 H 0.130 0.870 33 H -0.006 1.006 34 H -0.031 1.031 35 H 0.260 0.740 36 H 0.074 0.926 37 H 0.099 0.901 38 H 0.090 0.910 39 H 0.092 0.908 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.283 -8.103 -18.178 19.943 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.015 3.985 3 H 0.081 0.919 4 C -0.133 4.133 5 C -0.068 4.068 6 C -0.231 4.231 7 C 0.104 3.896 8 N -0.412 5.412 9 C -0.229 4.229 10 C -0.095 4.095 11 N -0.225 5.225 12 C 0.088 3.912 13 C -0.538 4.538 14 H 0.085 0.915 15 C -0.196 4.196 16 N -0.580 5.580 17 Si 0.785 3.215 18 H -0.187 1.187 19 H -0.208 1.208 20 H -0.208 1.208 21 C -0.094 4.094 22 C -0.180 4.180 23 C -0.216 4.216 24 H 0.099 0.901 25 H 0.080 0.920 26 H 0.052 0.948 27 H 0.125 0.875 28 H 0.145 0.855 29 H 0.235 0.765 30 H 0.233 0.767 31 H 0.154 0.846 32 H 0.148 0.852 33 H 0.012 0.988 34 H -0.013 1.013 35 H 0.069 0.931 36 H 0.091 0.909 37 H 0.118 0.882 38 H 0.108 0.892 39 H 0.110 0.890 40 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 1.720 -8.021 -18.046 19.823 hybrid contribution -0.482 0.240 1.109 1.232 sum 1.238 -7.781 -16.938 18.681 Atomic orbital electron populations 1.22400 0.97082 1.01987 1.01647 1.20448 0.92888 0.96289 0.88881 0.91881 1.19432 0.94722 1.04112 0.95081 1.20691 0.95080 0.94739 0.96298 1.20666 1.00257 1.07880 0.94319 1.17829 0.92656 0.91445 0.87676 1.42378 1.16179 1.65939 1.16662 1.20690 0.94988 1.06956 1.00264 1.20992 0.99378 0.96862 0.92272 1.62007 1.57451 1.01119 1.01930 1.19303 0.93510 0.91288 0.87068 1.21537 1.13484 1.25492 0.93282 0.91522 1.25806 0.97138 0.95437 1.01240 1.70095 1.33039 1.33067 1.21799 0.85477 0.78960 0.78111 0.78951 1.18662 1.20842 1.20778 1.22095 0.94588 0.87181 1.05518 1.22936 1.00505 0.98226 0.96357 1.23123 1.04213 1.01655 0.92651 0.90052 0.92010 0.94809 0.87506 0.85494 0.76541 0.76698 0.84573 0.85208 0.98829 1.01301 0.93076 0.90896 0.88222 0.89167 0.88982 0.89243 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.81 7.50 71.98 0.54 -5.27 16 2 C 0.12 4.60 2.68 44.17 0.12 4.72 16 3 H 0.06 2.53 7.86 -2.39 -0.02 2.51 16 4 C -0.13 -4.16 4.71 -19.84 -0.09 -4.25 16 5 C -0.05 -1.53 7.33 22.25 0.16 -1.37 16 6 C -0.21 -5.32 9.90 22.40 0.22 -5.10 16 7 C 0.21 4.61 6.75 38.21 0.26 4.87 16 8 N -0.87 -12.47 9.09 -51.37 -0.47 -12.93 16 9 C -0.21 -4.67 9.90 22.40 0.22 -4.44 16 10 C -0.08 -2.02 9.10 22.25 0.20 -1.81 16 11 N -0.50 -21.81 3.90 -854.78 -3.34 -25.15 16 12 C 0.21 11.47 3.99 85.56 0.34 11.82 16 13 C -0.50 -28.15 7.64 25.60 0.20 -27.95 16 14 H 0.07 3.70 5.99 -2.91 -0.02 3.69 16 15 C 0.00 0.04 5.46 84.65 0.46 0.51 16 16 N -0.94 -57.17 13.29 21.45 0.28 -56.88 16 17 Si 0.96 44.91 29.54 68.60 2.03 46.94 16 18 H -0.26 -11.77 7.11 99.48 0.71 -11.07 16 19 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 20 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 21 C 0.02 0.60 3.97 44.91 0.18 0.77 16 22 C -0.14 -4.80 9.45 30.59 0.29 -4.51 16 23 C -0.18 -7.04 9.52 30.59 0.29 -6.75 16 24 H 0.08 2.22 6.77 -2.39 -0.02 2.21 16 25 H 0.06 2.01 6.09 -2.39 -0.01 1.99 16 26 H 0.03 1.29 7.15 -2.39 -0.02 1.28 16 27 H 0.11 3.77 7.71 -2.91 -0.02 3.75 16 28 H 0.13 2.78 8.06 -2.91 -0.02 2.75 16 29 H 0.41 4.11 8.84 -92.71 -0.82 3.29 16 30 H 0.40 4.49 8.84 -92.71 -0.82 3.67 16 31 H 0.14 2.35 8.06 -2.91 -0.02 2.33 16 32 H 0.13 3.07 5.95 -2.91 -0.02 3.05 16 33 H -0.01 -0.37 7.73 -2.39 -0.02 -0.39 16 34 H -0.03 -1.81 7.48 -2.39 -0.02 -1.83 16 35 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 36 H 0.07 2.86 5.98 -2.39 -0.01 2.84 16 37 H 0.10 2.87 8.14 -2.39 -0.02 2.85 16 38 H 0.09 3.10 6.90 -2.39 -0.02 3.08 16 39 H 0.09 4.15 5.29 -2.39 -0.01 4.14 16 40 H 0.09 3.21 8.14 -2.39 -0.02 3.19 16 Total: -1.00 -65.11 314.30 1.32 -63.79 By element: Atomic # 1 Polarization: 23.59 SS G_CDS: -0.58 Total: 23.02 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 3.39 Total: -38.78 kcal Atomic # 7 Polarization: -91.45 SS G_CDS: -3.52 Total: -94.96 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -65.11 1.32 -63.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531012.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.338 kcal (2) G-P(sol) polarization free energy of solvation -65.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.793 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.545 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds