Wall clock time and date at job start Mon Mar 30 2020 06:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47113 * 2 1 4 4 C 1.50709 * 109.46806 * 119.99861 * 2 1 3 5 5 C 1.38307 * 119.96178 * 79.46772 * 4 2 1 6 6 C 1.38262 * 120.14905 * 180.02562 * 5 4 2 7 7 C 1.38130 * 120.07341 * 359.97438 * 6 5 4 8 8 C 1.38894 * 119.92688 * 359.97438 * 7 6 5 9 9 N 1.39675 * 120.07769 * 179.97438 * 8 7 6 10 10 C 1.38085 * 119.96008 * 259.20242 * 4 2 1 11 11 N 1.46893 * 109.47313 * 239.99613 * 2 1 3 12 12 C 1.46901 * 111.00018 * 180.94814 * 11 2 1 13 13 C 1.50699 * 109.47251 * 162.16533 * 12 11 2 14 14 H 1.08001 * 120.00082 * 354.55419 * 13 12 11 15 15 C 1.37874 * 119.99927 * 174.27535 * 13 12 11 16 16 N 1.31513 * 120.00513 * 0.27902 * 15 13 12 17 17 Si 1.86810 * 119.99894 * 180.27539 * 15 13 12 18 18 H 1.48496 * 109.46716 * 90.00187 * 17 15 13 19 19 H 1.48502 * 109.46829 * 210.00236 * 17 15 13 20 20 H 1.48499 * 109.46756 * 330.00089 * 17 15 13 21 21 C 1.46897 * 110.99967 * 56.99348 * 11 2 1 22 22 C 1.52997 * 117.50011 * 265.39168 * 21 11 2 23 23 C 1.53004 * 117.49788 * 196.73174 * 21 11 2 24 24 H 1.08999 * 109.47564 * 301.88447 * 1 2 3 25 25 H 1.09006 * 109.46971 * 61.88655 * 1 2 3 26 26 H 1.09003 * 109.47089 * 181.88297 * 1 2 3 27 27 H 1.07994 * 119.92641 * 0.02562 * 5 4 2 28 28 H 1.07994 * 119.96723 * 180.02562 * 6 5 4 29 29 H 1.08003 * 120.03856 * 180.02562 * 7 6 5 30 30 H 0.97000 * 119.99490 * 0.02562 * 9 8 7 31 31 H 0.96994 * 119.99798 * 179.97438 * 9 8 7 32 32 H 1.07997 * 120.03642 * 0.02562 * 10 4 2 33 33 H 1.08997 * 109.47205 * 42.16527 * 12 11 2 34 34 H 1.09001 * 109.46771 * 282.16556 * 12 11 2 35 35 H 0.96991 * 120.00601 * 179.97438 * 16 15 13 36 36 H 1.09002 * 115.55347 * 51.06093 * 21 11 2 37 37 H 1.09009 * 117.50181 * 0.02562 * 22 21 11 38 38 H 1.08999 * 117.50332 * 145.02034 * 22 21 11 39 39 H 1.09004 * 117.49874 * 214.97605 * 23 21 11 40 40 H 1.08992 * 117.50067 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 2.0560 -2.0928 1.2688 6 6 2.5155 -2.7485 2.3959 7 6 2.9531 -2.0245 3.4878 8 6 2.9317 -0.6361 3.4524 9 7 3.3729 0.0991 4.5549 10 6 2.4734 0.0196 2.3165 11 7 2.0197 -0.6925 -1.1993 12 6 3.4880 -0.7318 -1.2219 13 6 3.9474 -1.7923 -2.1890 14 1 3.2246 -2.4376 -2.6662 15 6 5.2898 -1.9351 -2.4690 16 7 6.1700 -1.1494 -1.8881 17 14 5.8585 -3.2447 -3.6737 18 1 5.8870 -2.6765 -5.0454 19 1 7.2204 -3.7035 -3.2995 20 1 4.9202 -4.3950 -3.6337 21 6 1.4909 -0.0693 -2.4199 22 6 0.2210 -0.6696 -3.0265 23 6 1.5713 -0.8765 -3.7172 24 1 -0.3634 0.5428 0.8726 25 1 -0.3633 0.4843 -0.9065 26 1 -0.3633 -1.0271 0.0338 27 1 1.7148 -2.6612 0.4163 28 1 2.5331 -3.8280 2.4225 29 1 3.3123 -2.5373 4.3679 30 1 3.6952 -0.3598 5.3464 31 1 3.3578 1.0686 4.5288 32 1 2.4582 1.0990 2.2845 33 1 3.8607 -0.9639 -0.2243 34 1 3.8725 0.2383 -1.5369 35 1 7.1144 -1.2500 -2.0848 36 1 1.6203 1.0107 -2.4904 37 1 -0.2223 -1.5268 -2.5196 38 1 -0.4848 0.0153 -3.4963 39 1 1.7533 -0.3276 -4.6411 40 1 2.0170 -1.8698 -3.6650 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042531013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:24 Heat of formation + Delta-G solvation = 58.570222 kcal Electronic energy + Delta-G solvation = -19867.217639 eV Core-core repulsion = 17068.539947 eV Total energy + Delta-G solvation = -2798.677692 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.27803 -37.61552 -34.81997 -33.32475 -32.71818 -30.55981 -29.17318 -27.89064 -26.10390 -23.24982 -22.03931 -21.80002 -21.54273 -20.37375 -18.98598 -16.61557 -16.46346 -16.21670 -15.31874 -14.87675 -14.72018 -14.39341 -13.84811 -13.48453 -13.14892 -12.98917 -12.71694 -12.45343 -12.01990 -11.68039 -11.48782 -11.46213 -11.03050 -10.81711 -10.78198 -10.62797 -10.51570 -10.30042 -9.98912 -9.81970 -9.50119 -9.06864 -9.00017 -8.34720 -8.14891 -7.22114 -7.05844 -5.91480 -3.90529 1.94901 2.21963 3.36431 3.42852 3.46175 4.13289 4.41589 4.49503 4.63336 4.82929 5.28015 5.42611 5.44843 5.63719 5.70624 5.74423 5.78776 5.83211 6.00202 6.06296 6.14132 6.20856 6.24936 6.34020 6.37835 6.47683 6.56149 6.67386 6.74900 6.77323 7.03121 7.16053 7.29477 7.38922 7.47691 7.50542 7.87340 7.95546 8.01498 8.23975 8.31233 8.65459 9.15609 9.71316 11.19308 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015667 B = 0.007694 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.784373 B = 3638.460741 C = 4806.935354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.120 3.880 3 H 0.033 0.967 4 C -0.015 4.015 5 C -0.130 4.130 6 C -0.080 4.080 7 C -0.205 4.205 8 C 0.204 3.796 9 N -0.886 5.886 10 C -0.194 4.194 11 N -0.501 5.501 12 C 0.195 3.805 13 C -0.493 4.493 14 H 0.067 0.933 15 C 0.054 3.946 16 N -0.900 5.900 17 Si 0.890 3.110 18 H -0.283 1.283 19 H -0.289 1.289 20 H -0.273 1.273 21 C 0.029 3.971 22 C -0.185 4.185 23 C -0.153 4.153 24 H 0.047 0.953 25 H 0.059 0.941 26 H 0.061 0.939 27 H 0.129 0.871 28 H 0.115 0.885 29 H 0.110 0.890 30 H 0.392 0.608 31 H 0.393 0.607 32 H 0.110 0.890 33 H 0.035 0.965 34 H -0.009 1.009 35 H 0.258 0.742 36 H 0.067 0.933 37 H 0.092 0.908 38 H 0.078 0.922 39 H 0.079 0.921 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.531 2.156 7.905 12.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.011 3.989 3 H 0.051 0.949 4 C -0.016 4.016 5 C -0.150 4.150 6 C -0.099 4.099 7 C -0.228 4.228 8 C 0.101 3.899 9 N -0.426 5.426 10 C -0.217 4.217 11 N -0.226 5.226 12 C 0.070 3.930 13 C -0.532 4.532 14 H 0.085 0.915 15 C -0.147 4.147 16 N -0.540 5.540 17 Si 0.719 3.281 18 H -0.209 1.209 19 H -0.215 1.215 20 H -0.198 1.198 21 C -0.080 4.080 22 C -0.223 4.223 23 C -0.190 4.190 24 H 0.066 0.934 25 H 0.078 0.922 26 H 0.080 0.920 27 H 0.147 0.853 28 H 0.133 0.867 29 H 0.128 0.872 30 H 0.220 0.780 31 H 0.220 0.780 32 H 0.128 0.872 33 H 0.053 0.947 34 H 0.009 0.991 35 H 0.068 0.932 36 H 0.084 0.916 37 H 0.110 0.890 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.517 1.677 7.882 12.471 hybrid contribution 1.168 0.484 -0.355 1.313 sum -8.349 2.161 7.527 11.447 Atomic orbital electron populations 1.21823 0.94395 1.02180 1.00828 1.20441 0.94716 0.94465 0.89236 0.94867 1.19462 0.94972 0.93918 0.93246 1.20833 1.02437 0.93848 0.97874 1.20852 0.97010 0.99124 0.92899 1.20431 1.10106 0.91833 1.00384 1.17615 0.93657 0.91048 0.87555 1.42345 1.75326 1.08303 1.16608 1.20341 1.08608 0.98829 0.93915 1.62004 1.13128 1.49710 0.97787 1.19744 0.79353 0.95982 0.97899 1.21225 0.91521 1.16206 1.24247 0.91519 1.24960 0.96882 0.96292 0.96552 1.69963 1.01585 1.38890 1.43558 0.86617 0.77986 0.82190 0.81342 1.20888 1.21482 1.19834 1.21966 1.00125 0.94106 0.91810 1.23053 0.91043 1.03275 1.04937 1.23082 0.98133 1.03456 0.94352 0.93404 0.92206 0.92032 0.85314 0.86713 0.87238 0.78023 0.77962 0.87160 0.94686 0.99093 0.93208 0.91593 0.88956 0.90361 0.90259 0.86775 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.06 8.67 37.16 0.32 -1.73 16 2 C 0.12 2.22 2.28 -68.86 -0.16 2.07 16 3 H 0.03 0.64 7.99 -51.93 -0.42 0.22 16 4 C -0.01 -0.28 3.48 -104.65 -0.36 -0.64 16 5 C -0.13 -2.45 8.60 -39.55 -0.34 -2.79 16 6 C -0.08 -1.36 10.04 -39.61 -0.40 -1.76 16 7 C -0.20 -3.25 9.90 -39.38 -0.39 -3.64 16 8 C 0.20 3.21 6.75 -83.78 -0.57 2.65 16 9 N -0.89 -10.48 9.09 32.41 0.29 -10.19 16 10 C -0.19 -3.33 9.52 -39.38 -0.37 -3.71 16 11 N -0.50 -10.59 3.77 -221.53 -0.83 -11.43 16 12 C 0.19 5.06 4.40 -4.98 -0.02 5.04 16 13 C -0.49 -13.60 8.00 -34.44 -0.28 -13.87 16 14 H 0.07 1.80 5.51 -52.49 -0.29 1.51 16 15 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 16 N -0.90 -27.11 13.29 55.43 0.74 -26.38 16 17 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 19 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 20 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 21 C 0.03 0.57 3.96 -67.71 -0.27 0.30 16 22 C -0.19 -3.00 8.87 -26.69 -0.24 -3.24 16 23 C -0.15 -2.90 9.40 -26.69 -0.25 -3.15 16 24 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.87 6.18 -51.93 -0.32 0.55 16 26 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 27 H 0.13 2.55 7.73 -52.49 -0.41 2.15 16 28 H 0.11 1.70 8.06 -52.49 -0.42 1.28 16 29 H 0.11 1.47 8.06 -52.48 -0.42 1.04 16 30 H 0.39 3.79 8.84 -40.82 -0.36 3.43 16 31 H 0.39 3.99 8.84 -40.82 -0.36 3.62 16 32 H 0.11 1.73 8.03 -52.49 -0.42 1.31 16 33 H 0.04 0.99 6.18 -51.93 -0.32 0.67 16 34 H -0.01 -0.26 8.03 -51.93 -0.42 -0.67 16 35 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 36 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.09 1.50 8.14 -51.92 -0.42 1.08 16 38 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 39 H 0.08 1.39 8.14 -51.93 -0.42 0.96 16 40 H 0.11 2.42 5.58 -51.93 -0.29 2.13 16 LS Contribution 322.52 15.07 4.86 4.86 Total: -1.00 -30.55 322.52 -9.50 -40.05 By element: Atomic # 1 Polarization: 15.47 SS G_CDS: -6.12 Total: 9.35 kcal Atomic # 6 Polarization: -19.64 SS G_CDS: -3.42 Total: -23.05 kcal Atomic # 7 Polarization: -48.19 SS G_CDS: 0.20 Total: -47.99 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -30.55 -9.50 -40.05 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.616 kcal (2) G-P(sol) polarization free energy of solvation -30.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.046 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds