Wall clock time and date at job start Mon Mar 30 2020 06:30:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.47113 * 2 1 4 4 C 1.50709 * 109.46806 * 119.99861 * 2 1 3 5 5 C 1.38307 * 119.96178 * 79.46772 * 4 2 1 6 6 C 1.38262 * 120.14905 * 180.02562 * 5 4 2 7 7 C 1.38130 * 120.07341 * 359.97438 * 6 5 4 8 8 C 1.38894 * 119.92688 * 359.97438 * 7 6 5 9 9 N 1.39675 * 120.07769 * 179.97438 * 8 7 6 10 10 C 1.38085 * 119.96008 * 259.20242 * 4 2 1 11 11 N 1.46893 * 109.47313 * 239.99613 * 2 1 3 12 12 C 1.46901 * 111.00018 * 180.94814 * 11 2 1 13 13 C 1.50699 * 109.47251 * 162.16533 * 12 11 2 14 14 H 1.08001 * 120.00082 * 354.55419 * 13 12 11 15 15 C 1.37874 * 119.99927 * 174.27535 * 13 12 11 16 16 N 1.31513 * 120.00513 * 0.27902 * 15 13 12 17 17 Si 1.86810 * 119.99894 * 180.27539 * 15 13 12 18 18 H 1.48496 * 109.46716 * 90.00187 * 17 15 13 19 19 H 1.48502 * 109.46829 * 210.00236 * 17 15 13 20 20 H 1.48499 * 109.46756 * 330.00089 * 17 15 13 21 21 C 1.46897 * 110.99967 * 56.99348 * 11 2 1 22 22 C 1.52997 * 117.50011 * 265.39168 * 21 11 2 23 23 C 1.53004 * 117.49788 * 196.73174 * 21 11 2 24 24 H 1.08999 * 109.47564 * 301.88447 * 1 2 3 25 25 H 1.09006 * 109.46971 * 61.88655 * 1 2 3 26 26 H 1.09003 * 109.47089 * 181.88297 * 1 2 3 27 27 H 1.07994 * 119.92641 * 0.02562 * 5 4 2 28 28 H 1.07994 * 119.96723 * 180.02562 * 6 5 4 29 29 H 1.08003 * 120.03856 * 180.02562 * 7 6 5 30 30 H 0.97000 * 119.99490 * 0.02562 * 9 8 7 31 31 H 0.96994 * 119.99798 * 179.97438 * 9 8 7 32 32 H 1.07997 * 120.03642 * 0.02562 * 10 4 2 33 33 H 1.08997 * 109.47205 * 42.16527 * 12 11 2 34 34 H 1.09001 * 109.46771 * 282.16556 * 12 11 2 35 35 H 0.96991 * 120.00601 * 179.97438 * 16 15 13 36 36 H 1.09002 * 115.55347 * 51.06093 * 21 11 2 37 37 H 1.09009 * 117.50181 * 0.02562 * 22 21 11 38 38 H 1.08999 * 117.50332 * 145.02034 * 22 21 11 39 39 H 1.09004 * 117.49874 * 214.97605 * 23 21 11 40 40 H 1.08992 * 117.50067 * 359.97438 * 23 21 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 1.2306 5 6 2.0560 -2.0928 1.2688 6 6 2.5155 -2.7485 2.3959 7 6 2.9531 -2.0245 3.4878 8 6 2.9317 -0.6361 3.4524 9 7 3.3729 0.0991 4.5549 10 6 2.4734 0.0196 2.3165 11 7 2.0197 -0.6925 -1.1993 12 6 3.4880 -0.7318 -1.2219 13 6 3.9474 -1.7923 -2.1890 14 1 3.2246 -2.4376 -2.6662 15 6 5.2898 -1.9351 -2.4690 16 7 6.1700 -1.1494 -1.8881 17 14 5.8585 -3.2447 -3.6737 18 1 5.8870 -2.6765 -5.0454 19 1 7.2204 -3.7035 -3.2995 20 1 4.9202 -4.3950 -3.6337 21 6 1.4909 -0.0693 -2.4199 22 6 0.2210 -0.6696 -3.0265 23 6 1.5713 -0.8765 -3.7172 24 1 -0.3634 0.5428 0.8726 25 1 -0.3633 0.4843 -0.9065 26 1 -0.3633 -1.0271 0.0338 27 1 1.7148 -2.6612 0.4163 28 1 2.5331 -3.8280 2.4225 29 1 3.3123 -2.5373 4.3679 30 1 3.6952 -0.3598 5.3464 31 1 3.3578 1.0686 4.5288 32 1 2.4582 1.0990 2.2845 33 1 3.8607 -0.9639 -0.2243 34 1 3.8725 0.2383 -1.5369 35 1 7.1144 -1.2500 -2.0848 36 1 1.6203 1.0107 -2.4904 37 1 -0.2223 -1.5268 -2.5196 38 1 -0.4848 0.0153 -3.4963 39 1 1.7533 -0.3276 -4.6411 40 1 2.0170 -1.8698 -3.6650 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042531013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:30:24 Heat of formation + Delta-G solvation = 39.630037 kcal Electronic energy + Delta-G solvation = -19868.038947 eV Core-core repulsion = 17068.539947 eV Total energy + Delta-G solvation = -2799.499000 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.66143 -39.09050 -36.15503 -35.01625 -34.43317 -32.21193 -30.59921 -29.14967 -28.04354 -24.62120 -24.01873 -23.14268 -22.95978 -21.80616 -20.51504 -18.51851 -17.65791 -17.63736 -16.67902 -16.65969 -16.35542 -15.89891 -15.45726 -14.93889 -14.47424 -14.44594 -14.18735 -14.01889 -13.65937 -13.39639 -13.19408 -12.86263 -12.71868 -12.44684 -12.41698 -12.24261 -12.01076 -11.68926 -11.67424 -11.24702 -11.17343 -10.92534 -10.62632 -10.46306 -9.53046 -8.97245 -8.26832 -8.10385 -6.16747 0.61997 0.88692 1.41459 1.42488 1.53307 2.44146 2.98864 3.12244 3.14370 3.22304 3.32671 3.92725 4.13969 4.23300 4.30999 4.35575 4.40227 4.44202 4.63312 4.75119 4.79322 4.84728 4.94601 4.99971 5.05692 5.13386 5.18777 5.25241 5.35587 5.37109 5.46748 5.48468 5.53816 5.78873 5.83260 5.99251 6.13009 6.21140 6.50747 6.69566 6.75387 6.99224 7.10400 7.50298 9.00617 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.015667 B = 0.007694 C = 0.005824 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1786.784373 B = 3638.460741 C = 4806.935354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.117 3.883 3 H 0.020 0.980 4 C -0.031 4.031 5 C -0.157 4.157 6 C -0.086 4.086 7 C -0.211 4.211 8 C 0.207 3.793 9 N -0.870 5.870 10 C -0.213 4.213 11 N -0.499 5.499 12 C 0.218 3.782 13 C -0.497 4.497 14 H 0.071 0.929 15 C -0.002 4.002 16 N -0.940 5.940 17 Si 0.958 3.042 18 H -0.274 1.274 19 H -0.288 1.288 20 H -0.263 1.263 21 C 0.000 4.000 22 C -0.140 4.140 23 C -0.169 4.169 24 H 0.066 0.934 25 H 0.069 0.931 26 H 0.060 0.940 27 H 0.110 0.890 28 H 0.133 0.867 29 H 0.138 0.862 30 H 0.406 0.594 31 H 0.403 0.597 32 H 0.119 0.881 33 H 0.007 0.993 34 H -0.051 1.051 35 H 0.259 0.741 36 H 0.064 0.936 37 H 0.095 0.905 38 H 0.113 0.887 39 H 0.091 0.909 40 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.813 1.692 8.265 13.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.009 3.991 3 H 0.038 0.962 4 C -0.032 4.032 5 C -0.177 4.177 6 C -0.104 4.104 7 C -0.233 4.233 8 C 0.102 3.898 9 N -0.411 5.411 10 C -0.237 4.237 11 N -0.223 5.223 12 C 0.092 3.908 13 C -0.535 4.535 14 H 0.089 0.911 15 C -0.199 4.199 16 N -0.581 5.581 17 Si 0.784 3.216 18 H -0.200 1.200 19 H -0.214 1.214 20 H -0.187 1.187 21 C -0.109 4.109 22 C -0.177 4.177 23 C -0.206 4.206 24 H 0.085 0.915 25 H 0.088 0.912 26 H 0.079 0.921 27 H 0.128 0.872 28 H 0.151 0.849 29 H 0.156 0.844 30 H 0.236 0.764 31 H 0.232 0.768 32 H 0.137 0.863 33 H 0.025 0.975 34 H -0.033 1.033 35 H 0.067 0.933 36 H 0.081 0.919 37 H 0.114 0.886 38 H 0.132 0.868 39 H 0.110 0.890 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -10.822 1.226 8.269 13.675 hybrid contribution 1.556 0.685 -0.379 1.742 sum -9.266 1.911 7.890 12.320 Atomic orbital electron populations 1.21727 0.91515 1.02531 1.02194 1.20568 0.96938 0.93348 0.88258 0.96158 1.19573 0.95759 0.94111 0.93744 1.20770 1.04602 0.94041 0.98317 1.21115 0.96390 1.00255 0.92658 1.20752 1.09611 0.92022 1.00958 1.17750 0.92577 0.91479 0.87993 1.42298 1.74011 1.08871 1.15901 1.20514 1.09377 0.99394 0.94381 1.61934 1.09859 1.50855 0.99695 1.19281 0.82575 0.93293 0.95669 1.21541 0.91784 1.16202 1.24005 0.91123 1.25834 0.97102 0.98503 0.98427 1.70112 1.01826 1.40855 1.45349 0.85543 0.77395 0.79607 0.79076 1.20021 1.21401 1.18743 1.22113 1.03348 0.94065 0.91351 1.23081 0.89812 1.02924 1.01913 1.23043 1.00704 1.02116 0.94725 0.91533 0.91236 0.92122 0.87205 0.84949 0.84427 0.76409 0.76806 0.86309 0.97519 1.03294 0.93274 0.91856 0.88606 0.86836 0.89009 0.89341 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.59 8.67 71.98 0.62 -2.97 16 2 C 0.12 4.42 2.28 44.17 0.10 4.52 16 3 H 0.02 0.81 7.99 -2.39 -0.02 0.79 16 4 C -0.03 -1.18 3.48 -19.88 -0.07 -1.25 16 5 C -0.16 -6.08 8.60 22.29 0.19 -5.88 16 6 C -0.09 -2.88 10.04 22.25 0.22 -2.66 16 7 C -0.21 -6.38 9.90 22.40 0.22 -6.16 16 8 C 0.21 6.28 6.75 38.22 0.26 6.54 16 9 N -0.87 -18.75 9.09 -51.37 -0.47 -19.21 16 10 C -0.21 -7.36 9.52 22.40 0.21 -7.14 16 11 N -0.50 -21.67 3.77 -854.79 -3.22 -24.89 16 12 C 0.22 11.87 4.40 85.56 0.38 12.25 16 13 C -0.50 -28.18 8.00 25.60 0.20 -27.98 16 14 H 0.07 3.89 5.51 -2.91 -0.02 3.88 16 15 C 0.00 -0.12 5.46 84.65 0.46 0.35 16 16 N -0.94 -58.35 13.29 21.45 0.28 -58.07 16 17 Si 0.96 45.32 29.54 68.60 2.03 47.34 16 18 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 19 H -0.29 -13.51 7.11 99.48 0.71 -12.80 16 20 H -0.26 -11.90 7.11 99.48 0.71 -11.20 16 21 C 0.00 0.01 3.96 44.92 0.18 0.19 16 22 C -0.14 -4.20 8.87 30.62 0.27 -3.93 16 23 C -0.17 -6.28 9.40 30.62 0.29 -5.99 16 24 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 25 H 0.07 1.88 6.18 -2.38 -0.01 1.86 16 26 H 0.06 1.79 8.14 -2.39 -0.02 1.77 16 27 H 0.11 4.55 7.73 -2.91 -0.02 4.53 16 28 H 0.13 3.83 8.06 -2.91 -0.02 3.81 16 29 H 0.14 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.41 6.73 8.84 -92.71 -0.82 5.91 16 31 H 0.40 7.35 8.84 -92.71 -0.82 6.53 16 32 H 0.12 3.74 8.03 -2.91 -0.02 3.72 16 33 H 0.01 0.41 6.18 -2.39 -0.01 0.39 16 34 H -0.05 -3.12 8.03 -2.39 -0.02 -3.14 16 35 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 36 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 37 H 0.10 2.86 8.14 -2.38 -0.02 2.84 16 38 H 0.11 2.68 8.14 -2.39 -0.02 2.66 16 39 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 40 H 0.09 3.77 5.58 -2.39 -0.01 3.75 16 Total: -1.00 -68.06 322.52 1.57 -66.49 By element: Atomic # 1 Polarization: 29.06 SS G_CDS: -0.60 Total: 28.46 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 3.54 Total: -40.12 kcal Atomic # 7 Polarization: -98.77 SS G_CDS: -3.40 Total: -102.17 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.34 kcal Total: -68.06 1.57 -66.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.120 kcal (2) G-P(sol) polarization free energy of solvation -68.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.058 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.490 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds