Wall clock time and date at job start Mon Mar 30 2020 06:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46772 * 2 1 4 4 N 1.46892 * 109.47557 * 119.99938 * 2 1 3 5 5 C 1.50698 * 109.47046 * 240.00469 * 2 1 3 6 6 C 1.38287 * 119.92854 * 99.99353 * 5 2 1 7 7 C 1.38105 * 120.07808 * 180.02562 * 6 5 2 8 8 C 1.38914 * 119.92363 * 0.02562 * 7 6 5 9 9 N 1.39667 * 120.07644 * 179.97438 * 8 7 6 10 10 C 1.46503 * 120.00217 * 270.61723 * 9 8 7 11 11 C 1.50699 * 109.47171 * 89.99840 * 10 9 8 12 12 H 1.07999 * 120.00004 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99948 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00128 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00039 * 359.97438 * 13 11 10 16 16 H 1.48511 * 109.46950 * 90.00305 * 15 13 11 17 17 H 1.48496 * 109.47107 * 210.00239 * 15 13 11 18 18 H 1.48500 * 109.47133 * 330.00289 * 15 13 11 19 19 C 1.46502 * 120.00091 * 90.33886 * 9 8 7 20 20 C 1.53004 * 117.49482 * 3.31950 * 19 9 8 21 21 C 1.52999 * 117.49619 * 294.69688 * 19 9 8 22 22 C 1.38920 * 119.84840 * 0.25466 * 8 7 6 23 23 C 1.38101 * 119.92366 * 359.48713 * 22 8 7 24 24 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47078 * 299.99441 * 1 2 3 26 26 H 1.08996 * 109.47499 * 60.00042 * 1 2 3 27 27 H 1.00902 * 111.00205 * 60.00368 * 4 2 1 28 28 H 1.00900 * 111.00083 * 183.95550 * 4 2 1 29 29 H 1.07998 * 119.96278 * 0.04968 * 6 5 2 30 30 H 1.07993 * 120.03807 * 180.02562 * 7 6 5 31 31 H 1.08994 * 109.46999 * 209.99869 * 10 9 8 32 32 H 1.09005 * 109.46851 * 329.99958 * 10 9 8 33 33 H 0.97001 * 119.99929 * 179.97438 * 14 13 11 34 34 H 1.09000 * 115.54999 * 149.02632 * 19 9 8 35 35 H 1.08998 * 117.49893 * 359.97438 * 20 19 9 36 36 H 1.08997 * 117.49694 * 145.02180 * 20 19 9 37 37 H 1.09003 * 117.49707 * 214.97289 * 21 19 9 38 38 H 1.09002 * 117.50123 * 359.97229 * 21 19 9 39 39 H 1.07999 * 120.03531 * 179.72441 * 22 8 7 40 40 H 1.08000 * 119.96190 * 180.25322 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6924 1.1993 5 6 2.0323 -0.7103 -1.2305 6 6 2.4584 0.0214 -2.3239 7 6 2.9188 -0.6264 -3.4534 8 6 2.9531 -2.0146 -3.4905 9 7 3.4177 -2.6730 -4.6313 10 6 2.4854 -3.0229 -5.7059 11 6 2.4129 -1.8898 -6.6968 12 1 3.0021 -0.9981 -6.5415 13 6 1.5937 -1.9911 -7.8012 14 7 1.5301 -1.0021 -8.6657 15 14 0.5742 -3.5332 -8.0695 16 1 -0.7480 -3.3729 -7.4125 17 1 0.3802 -3.7512 -9.5256 18 1 1.2797 -4.7012 -7.4838 19 6 4.8383 -3.0084 -4.7561 20 6 5.7482 -2.6809 -3.5704 21 6 5.8320 -1.8490 -4.8518 22 6 2.5189 -2.7466 -2.3926 23 6 2.0647 -2.0924 -1.2643 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6963 -1.6479 1.2227 28 1 3.0263 -0.6500 1.2557 29 1 2.4314 1.1006 -2.2944 30 1 3.2518 -0.0544 -4.3067 31 1 2.8335 -3.9245 -6.2098 32 1 1.4959 -3.2010 -5.2847 33 1 0.9540 -1.0735 -9.4429 34 1 5.0601 -3.9099 -5.3273 35 1 5.2899 -2.2156 -2.6978 36 1 6.5689 -3.3671 -3.3613 37 1 6.7079 -1.9879 -5.4856 38 1 5.4288 -0.8367 -4.8224 39 1 2.5401 -3.8261 -2.4199 40 1 1.7309 -2.6608 -0.4089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000042531467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:29 Heat of formation + Delta-G solvation = 62.283079 kcal Electronic energy + Delta-G solvation = -19498.827821 eV Core-core repulsion = 16700.311131 eV Total energy + Delta-G solvation = -2798.516691 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.54118 -37.51606 -35.32369 -33.55374 -32.03065 -30.63126 -29.42407 -28.59081 -26.62961 -23.25044 -22.39341 -21.98269 -21.75997 -20.61889 -19.38010 -16.79765 -16.52535 -15.99572 -15.77648 -15.39121 -14.82863 -14.16656 -14.13910 -13.70365 -13.46514 -13.02721 -12.89789 -12.52496 -12.29508 -12.11556 -11.85652 -11.56659 -11.44858 -11.16178 -11.02071 -10.95853 -10.78166 -10.45176 -10.34462 -9.89567 -9.82392 -9.36113 -8.93192 -8.57948 -8.53989 -8.03590 -6.81883 -6.06357 -4.03476 1.68571 1.79448 3.26781 3.34271 3.35430 4.09376 4.12595 4.40031 4.42724 4.54591 4.89108 5.07176 5.24365 5.28266 5.34842 5.39594 5.42800 5.45054 5.58203 5.77061 5.83430 5.88737 5.99417 6.09275 6.13086 6.17310 6.27220 6.41094 6.47061 6.61837 6.65982 6.79353 6.85527 6.88845 7.09055 7.19444 7.27761 7.34255 7.68067 8.19751 8.55613 8.70712 9.02576 9.56532 11.07225 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.006199 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.838007 B = 4515.595986 C = 5298.340534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.130 3.870 3 H 0.084 0.916 4 N -0.841 5.841 5 C -0.139 4.139 6 C -0.110 4.110 7 C -0.112 4.112 8 C 0.203 3.797 9 N -0.645 5.645 10 C 0.247 3.753 11 C -0.527 4.527 12 H 0.075 0.925 13 C 0.068 3.932 14 N -0.901 5.901 15 Si 0.872 3.128 16 H -0.277 1.277 17 H -0.286 1.286 18 H -0.266 1.266 19 C 0.137 3.863 20 C -0.203 4.203 21 C -0.206 4.206 22 C -0.130 4.130 23 C -0.119 4.119 24 H 0.053 0.947 25 H 0.061 0.939 26 H 0.061 0.939 27 H 0.338 0.662 28 H 0.341 0.659 29 H 0.115 0.885 30 H 0.125 0.875 31 H 0.022 0.978 32 H 0.013 0.987 33 H 0.262 0.738 34 H 0.110 0.890 35 H 0.088 0.912 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.090 0.910 39 H 0.117 0.883 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.086 -1.930 15.430 15.854 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.019 3.981 3 H 0.102 0.898 4 N -0.369 5.369 5 C -0.141 4.141 6 C -0.129 4.129 7 C -0.132 4.132 8 C 0.111 3.889 9 N -0.368 5.368 10 C 0.126 3.874 11 C -0.566 4.566 12 H 0.093 0.907 13 C -0.133 4.133 14 N -0.540 5.540 15 Si 0.699 3.301 16 H -0.203 1.203 17 H -0.212 1.212 18 H -0.191 1.191 19 C 0.030 3.970 20 C -0.242 4.242 21 C -0.246 4.246 22 C -0.150 4.150 23 C -0.138 4.138 24 H 0.072 0.928 25 H 0.080 0.920 26 H 0.080 0.920 27 H 0.151 0.849 28 H 0.153 0.847 29 H 0.133 0.867 30 H 0.143 0.857 31 H 0.040 0.960 32 H 0.031 0.969 33 H 0.072 0.928 34 H 0.128 0.872 35 H 0.107 0.893 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.109 0.891 39 H 0.135 0.865 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 2.524 -1.373 15.636 15.898 hybrid contribution -0.098 -1.230 -1.207 1.726 sum 2.426 -2.603 14.429 14.861 Atomic orbital electron populations 1.21787 0.93870 1.02160 1.01895 1.20342 0.95467 0.97287 0.85017 0.89799 1.59100 1.16335 1.21430 1.40063 1.20628 1.01959 0.94178 0.97351 1.20905 0.99670 0.99256 0.93105 1.21873 0.98619 0.95207 0.97490 1.17381 0.94473 0.89946 0.87143 1.45472 1.04280 1.68929 1.18122 1.19309 0.87429 0.95595 0.85047 1.21663 1.25739 1.03319 1.05845 0.90653 1.24918 0.96554 0.96015 0.95845 1.69909 1.39445 1.31702 1.12947 0.86915 0.81221 0.84390 0.77534 1.20258 1.21176 1.19060 1.21085 0.79976 0.96727 0.99175 1.23230 1.02887 1.04694 0.93353 1.23395 1.03059 0.98587 0.99587 1.21574 1.00107 0.99878 0.93427 1.20626 1.01663 0.93605 0.97938 0.92750 0.92026 0.91953 0.84855 0.84674 0.86665 0.85712 0.96042 0.96865 0.92766 0.87189 0.89327 0.89295 0.89468 0.89106 0.86536 0.87171 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.53 9.46 37.16 0.35 -1.17 16 2 C 0.13 1.47 3.59 -68.87 -0.25 1.22 16 3 H 0.08 0.93 8.00 -51.93 -0.42 0.51 16 4 N -0.84 -8.37 9.06 -5.66 -0.05 -8.42 16 5 C -0.14 -1.90 4.95 -104.59 -0.52 -2.42 16 6 C -0.11 -1.70 9.66 -39.61 -0.38 -2.08 16 7 C -0.11 -2.06 9.82 -39.38 -0.39 -2.45 16 8 C 0.20 3.81 3.49 -83.79 -0.29 3.52 16 9 N -0.64 -13.19 2.72 -165.54 -0.45 -13.64 16 10 C 0.25 5.88 4.55 -5.19 -0.02 5.86 16 11 C -0.53 -14.70 9.94 -34.44 -0.34 -15.04 16 12 H 0.08 2.31 8.06 -52.49 -0.42 1.89 16 13 C 0.07 1.95 5.47 -17.82 -0.10 1.86 16 14 N -0.90 -27.48 13.96 55.43 0.77 -26.71 16 15 Si 0.87 21.24 27.47 -169.99 -4.67 16.57 16 16 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 17 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 18 H -0.27 -6.16 6.54 56.52 0.37 -5.79 16 19 C 0.14 2.45 6.57 -67.93 -0.45 2.00 16 20 C -0.20 -3.06 9.84 -26.73 -0.26 -3.33 16 21 C -0.21 -3.47 10.37 -26.73 -0.28 -3.74 16 22 C -0.13 -2.12 9.92 -39.38 -0.39 -2.51 16 23 C -0.12 -1.65 9.28 -39.61 -0.37 -2.02 16 24 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 25 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 26 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 27 H 0.34 3.12 7.34 -39.29 -0.29 2.83 16 28 H 0.34 3.15 9.06 -39.29 -0.36 2.79 16 29 H 0.12 1.57 8.03 -52.49 -0.42 1.14 16 30 H 0.12 2.54 7.94 -52.49 -0.42 2.12 16 31 H 0.02 0.51 7.13 -51.93 -0.37 0.14 16 32 H 0.01 0.33 7.48 -51.93 -0.39 -0.06 16 33 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 34 H 0.11 1.87 8.14 -51.93 -0.42 1.44 16 35 H 0.09 1.40 7.02 -51.93 -0.36 1.03 16 36 H 0.09 1.14 8.14 -51.93 -0.42 0.72 16 37 H 0.09 1.33 8.14 -51.93 -0.42 0.91 16 38 H 0.09 1.67 7.88 -51.93 -0.41 1.26 16 39 H 0.12 1.81 8.06 -52.49 -0.42 1.39 16 40 H 0.11 1.26 6.66 -52.49 -0.35 0.91 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -29.84 330.70 -9.43 -39.26 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -6.33 Total: 8.25 kcal Atomic # 6 Polarization: -16.62 SS G_CDS: -3.68 Total: -20.30 kcal Atomic # 7 Polarization: -49.04 SS G_CDS: 0.27 Total: -48.77 kcal Atomic # 14 Polarization: 21.24 SS G_CDS: -4.67 Total: 16.57 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -29.84 -9.43 -39.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.545 kcal (2) G-P(sol) polarization free energy of solvation -29.836 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.426 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.262 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds