Wall clock time and date at job start Mon Mar 30 2020 06:28:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.09001 * 109.46772 * 2 1 4 4 N 1.46892 * 109.47557 * 119.99938 * 2 1 3 5 5 C 1.50698 * 109.47046 * 240.00469 * 2 1 3 6 6 C 1.38287 * 119.92854 * 99.99353 * 5 2 1 7 7 C 1.38105 * 120.07808 * 180.02562 * 6 5 2 8 8 C 1.38914 * 119.92363 * 0.02562 * 7 6 5 9 9 N 1.39667 * 120.07644 * 179.97438 * 8 7 6 10 10 C 1.46503 * 120.00217 * 270.61723 * 9 8 7 11 11 C 1.50699 * 109.47171 * 89.99840 * 10 9 8 12 12 H 1.07999 * 120.00004 * 359.97438 * 11 10 9 13 13 C 1.37880 * 119.99948 * 180.02562 * 11 10 9 14 14 N 1.31514 * 120.00128 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00039 * 359.97438 * 13 11 10 16 16 H 1.48511 * 109.46950 * 90.00305 * 15 13 11 17 17 H 1.48496 * 109.47107 * 210.00239 * 15 13 11 18 18 H 1.48500 * 109.47133 * 330.00289 * 15 13 11 19 19 C 1.46502 * 120.00091 * 90.33886 * 9 8 7 20 20 C 1.53004 * 117.49482 * 3.31950 * 19 9 8 21 21 C 1.52999 * 117.49619 * 294.69688 * 19 9 8 22 22 C 1.38920 * 119.84840 * 0.25466 * 8 7 6 23 23 C 1.38101 * 119.92366 * 359.48713 * 22 8 7 24 24 H 1.09001 * 109.46772 * 179.97438 * 1 2 3 25 25 H 1.08993 * 109.47078 * 299.99441 * 1 2 3 26 26 H 1.08996 * 109.47499 * 60.00042 * 1 2 3 27 27 H 1.00902 * 111.00205 * 60.00368 * 4 2 1 28 28 H 1.00900 * 111.00083 * 183.95550 * 4 2 1 29 29 H 1.07998 * 119.96278 * 0.04968 * 6 5 2 30 30 H 1.07993 * 120.03807 * 180.02562 * 7 6 5 31 31 H 1.08994 * 109.46999 * 209.99869 * 10 9 8 32 32 H 1.09005 * 109.46851 * 329.99958 * 10 9 8 33 33 H 0.97001 * 119.99929 * 179.97438 * 14 13 11 34 34 H 1.09000 * 115.54999 * 149.02632 * 19 9 8 35 35 H 1.08998 * 117.49893 * 359.97438 * 20 19 9 36 36 H 1.08997 * 117.49694 * 145.02180 * 20 19 9 37 37 H 1.09003 * 117.49707 * 214.97289 * 21 19 9 38 38 H 1.09002 * 117.50123 * 359.97229 * 21 19 9 39 39 H 1.07999 * 120.03531 * 179.72441 * 22 8 7 40 40 H 1.08000 * 119.96190 * 180.25322 * 23 22 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0198 -0.6924 1.1993 5 6 2.0323 -0.7103 -1.2305 6 6 2.4584 0.0214 -2.3239 7 6 2.9188 -0.6264 -3.4534 8 6 2.9531 -2.0146 -3.4905 9 7 3.4177 -2.6730 -4.6313 10 6 2.4854 -3.0229 -5.7059 11 6 2.4129 -1.8898 -6.6968 12 1 3.0021 -0.9981 -6.5415 13 6 1.5937 -1.9911 -7.8012 14 7 1.5301 -1.0021 -8.6657 15 14 0.5742 -3.5332 -8.0695 16 1 -0.7480 -3.3729 -7.4125 17 1 0.3802 -3.7512 -9.5256 18 1 1.2797 -4.7012 -7.4838 19 6 4.8383 -3.0084 -4.7561 20 6 5.7482 -2.6809 -3.5704 21 6 5.8320 -1.8490 -4.8518 22 6 2.5189 -2.7466 -2.3926 23 6 2.0647 -2.0924 -1.2643 24 1 -0.3633 -1.0277 -0.0005 25 1 -0.3633 0.5137 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 1.6963 -1.6479 1.2227 28 1 3.0263 -0.6500 1.2557 29 1 2.4314 1.1006 -2.2944 30 1 3.2518 -0.0544 -4.3067 31 1 2.8335 -3.9245 -6.2098 32 1 1.4959 -3.2010 -5.2847 33 1 0.9540 -1.0735 -9.4429 34 1 5.0601 -3.9099 -5.3273 35 1 5.2899 -2.2156 -2.6978 36 1 6.5689 -3.3671 -3.3613 37 1 6.7079 -1.9879 -5.4856 38 1 5.4288 -0.8367 -4.8224 39 1 2.5401 -3.8261 -2.4199 40 1 1.7309 -2.6608 -0.4089 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000042531467.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:29 Heat of formation + Delta-G solvation = 44.204156 kcal Electronic energy + Delta-G solvation = -19499.611782 eV Core-core repulsion = 16700.311131 eV Total energy + Delta-G solvation = -2799.300651 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.80899 -38.80082 -36.43261 -35.36793 -33.85626 -31.89153 -30.76838 -29.69245 -28.28296 -24.52598 -23.86449 -23.61048 -23.05436 -21.81012 -20.70541 -18.94469 -17.75793 -17.29894 -17.02135 -16.65502 -16.06675 -15.94593 -15.46590 -14.96119 -14.71788 -14.50009 -14.27288 -13.90981 -13.87136 -13.55351 -13.15425 -12.96678 -12.76421 -12.50003 -12.42633 -12.33585 -12.16549 -12.01289 -11.81564 -11.61465 -11.39338 -11.15862 -10.77818 -9.86371 -9.76878 -9.27266 -8.40362 -8.26840 -6.31140 0.42119 0.51937 1.34517 1.35570 1.46478 2.33822 2.62710 2.83558 3.05075 3.10158 3.70582 3.84911 4.00328 4.05001 4.09817 4.14897 4.22460 4.37714 4.49385 4.55325 4.69785 4.76926 4.81909 4.88681 4.94222 4.96288 5.02608 5.07071 5.12555 5.18892 5.29016 5.30959 5.43790 5.53540 5.62814 5.87227 6.00944 6.21230 6.24441 6.61168 6.69244 6.81336 7.13363 7.36251 8.89173 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.018528 B = 0.006199 C = 0.005283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.838007 B = 4515.595986 C = 5298.340534 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.136 3.864 3 H 0.088 0.912 4 N -0.836 5.836 5 C -0.126 4.126 6 C -0.113 4.113 7 C -0.138 4.138 8 C 0.176 3.824 9 N -0.651 5.651 10 C 0.257 3.743 11 C -0.528 4.528 12 H 0.026 0.974 13 C 0.006 3.994 14 N -0.952 5.952 15 Si 0.946 3.054 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.242 1.242 19 C 0.108 3.892 20 C -0.164 4.164 21 C -0.219 4.219 22 C -0.131 4.131 23 C -0.107 4.107 24 H 0.055 0.945 25 H 0.072 0.928 26 H 0.053 0.947 27 H 0.345 0.655 28 H 0.347 0.653 29 H 0.128 0.872 30 H 0.085 0.915 31 H 0.030 0.970 32 H 0.013 0.987 33 H 0.265 0.735 34 H 0.120 0.880 35 H 0.083 0.917 36 H 0.123 0.877 37 H 0.102 0.898 38 H 0.061 0.939 39 H 0.128 0.872 40 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.598 -4.173 18.215 18.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.024 3.976 3 H 0.106 0.894 4 N -0.366 5.366 5 C -0.128 4.128 6 C -0.133 4.133 7 C -0.158 4.158 8 C 0.084 3.916 9 N -0.374 5.374 10 C 0.135 3.865 11 C -0.567 4.567 12 H 0.044 0.956 13 C -0.191 4.191 14 N -0.593 5.593 15 Si 0.770 3.230 16 H -0.195 1.195 17 H -0.208 1.208 18 H -0.165 1.165 19 C 0.003 3.997 20 C -0.201 4.201 21 C -0.259 4.259 22 C -0.151 4.151 23 C -0.126 4.126 24 H 0.075 0.925 25 H 0.091 0.909 26 H 0.072 0.928 27 H 0.160 0.840 28 H 0.160 0.840 29 H 0.146 0.854 30 H 0.103 0.897 31 H 0.047 0.953 32 H 0.031 0.969 33 H 0.073 0.927 34 H 0.138 0.862 35 H 0.101 0.899 36 H 0.141 0.859 37 H 0.121 0.879 38 H 0.080 0.920 39 H 0.146 0.854 40 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.069 -3.619 18.464 18.929 hybrid contribution 0.107 -0.380 -1.997 2.036 sum 2.176 -3.999 16.467 17.085 Atomic orbital electron populations 1.21775 0.93347 1.02367 1.02097 1.20330 0.95744 0.97372 0.84140 0.89403 1.59081 1.16919 1.21911 1.38654 1.20959 1.00080 0.94363 0.97408 1.21069 0.99290 1.00149 0.92752 1.21705 1.00959 0.95509 0.97657 1.17580 0.96403 0.89939 0.87696 1.45378 1.04881 1.69282 1.17886 1.19001 0.88448 0.93916 0.85178 1.21914 1.24672 1.03050 1.07098 0.95612 1.25896 0.98008 0.99811 0.95393 1.70084 1.40915 1.34444 1.13873 0.85732 0.79371 0.80334 0.77608 1.19537 1.20831 1.16504 1.21385 0.79187 0.97258 1.01902 1.23201 1.01976 1.03258 0.91699 1.23353 1.03410 0.97091 1.02028 1.21657 0.99883 1.00373 0.93189 1.20969 0.99812 0.93776 0.98028 0.92539 0.90855 0.92802 0.84045 0.83973 0.85422 0.89654 0.95256 0.96913 0.92659 0.86221 0.89872 0.85916 0.87949 0.92041 0.85430 0.83699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.64 9.46 71.98 0.68 -1.95 16 2 C 0.14 2.68 3.59 44.17 0.16 2.83 16 3 H 0.09 1.71 8.00 -2.39 -0.02 1.69 16 4 N -0.84 -13.59 9.06 -171.82 -1.56 -15.15 16 5 C -0.13 -3.18 4.95 -19.84 -0.10 -3.27 16 6 C -0.11 -3.52 9.66 22.25 0.21 -3.30 16 7 C -0.14 -5.38 9.82 22.40 0.22 -5.16 16 8 C 0.18 6.68 3.49 38.22 0.13 6.81 16 9 N -0.65 -27.12 2.72 -677.64 -1.85 -28.97 16 10 C 0.26 12.37 4.55 85.63 0.39 12.76 16 11 C -0.53 -30.88 9.94 25.60 0.25 -30.63 16 12 H 0.03 1.71 8.06 -2.91 -0.02 1.69 16 13 C 0.01 0.34 5.47 84.66 0.46 0.80 16 14 N -0.95 -60.54 13.96 21.45 0.30 -60.24 16 15 Si 0.95 44.07 27.47 68.60 1.88 45.95 16 16 H -0.27 -12.23 7.11 99.48 0.71 -11.53 16 17 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 18 H -0.24 -10.24 6.54 99.48 0.65 -9.59 16 19 C 0.11 3.88 6.57 44.99 0.30 4.17 16 20 C -0.16 -4.69 9.84 30.60 0.30 -4.39 16 21 C -0.22 -7.56 10.37 30.60 0.32 -7.24 16 22 C -0.13 -4.04 9.92 22.40 0.22 -3.82 16 23 C -0.11 -2.65 9.28 22.25 0.21 -2.44 16 24 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 25 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 26 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 27 H 0.35 4.88 7.34 -89.69 -0.66 4.22 16 28 H 0.35 5.18 9.06 -89.69 -0.81 4.36 16 29 H 0.13 3.51 8.03 -2.91 -0.02 3.49 16 30 H 0.09 3.91 7.94 -2.91 -0.02 3.88 16 31 H 0.03 1.37 7.13 -2.39 -0.02 1.35 16 32 H 0.01 0.62 7.48 -2.38 -0.02 0.60 16 33 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 34 H 0.12 3.97 8.14 -2.39 -0.02 3.95 16 35 H 0.08 2.51 7.02 -2.39 -0.02 2.50 16 36 H 0.12 2.72 8.14 -2.39 -0.02 2.70 16 37 H 0.10 3.14 8.14 -2.39 -0.02 3.12 16 38 H 0.06 2.47 7.88 -2.39 -0.02 2.45 16 39 H 0.13 3.62 8.06 -2.91 -0.02 3.60 16 40 H 0.15 2.61 6.66 -2.91 -0.02 2.59 16 Total: -1.00 -68.14 330.70 2.05 -66.09 By element: Atomic # 1 Polarization: 27.64 SS G_CDS: -0.50 Total: 27.14 kcal Atomic # 6 Polarization: -38.59 SS G_CDS: 3.76 Total: -34.83 kcal Atomic # 7 Polarization: -101.25 SS G_CDS: -3.10 Total: -104.35 kcal Atomic # 14 Polarization: 44.07 SS G_CDS: 1.88 Total: 45.95 kcal Total: -68.14 2.05 -66.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000042531467.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 110.296 kcal (2) G-P(sol) polarization free energy of solvation -68.138 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.046 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.091 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.204 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds