Wall clock time and date at job start Mon Mar 30 2020 06:45:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08997 * 109.47512 * 2 1 4 4 C 1.50706 * 109.46879 * 120.00059 * 2 1 3 5 5 H 1.07997 * 119.99788 * 114.59017 * 4 2 1 6 6 C 1.37872 * 119.99983 * 294.58958 * 4 2 1 7 7 N 1.31513 * 120.00008 * 359.97438 * 6 4 2 8 8 Si 1.86793 * 119.99943 * 180.02562 * 6 4 2 9 9 H 1.48498 * 109.47456 * 59.99977 * 8 6 4 10 10 H 1.48511 * 109.47189 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.47082 * 299.99566 * 8 6 4 12 12 N 1.46907 * 109.47107 * 239.99646 * 2 1 3 13 13 C 1.46954 * 110.99648 * 171.50989 * 12 2 1 14 14 C 1.53056 * 109.35819 * 183.18916 * 13 12 2 15 15 N 1.46951 * 109.36907 * 301.60047 * 14 13 12 16 16 C 1.39673 * 111.00257 * 183.19202 * 15 14 13 17 17 C 1.38907 * 120.07563 * 180.02562 * 16 15 14 18 18 C 1.38099 * 119.92713 * 179.97438 * 17 16 15 19 19 C 1.38285 * 120.07297 * 0.02562 * 18 17 16 20 20 C 1.38285 * 120.15071 * 359.97438 * 19 18 17 21 21 C 1.38105 * 120.07686 * 0.02562 * 20 19 18 22 22 C 1.46960 * 110.88049 * 59.31903 * 15 14 13 23 23 C 1.46956 * 111.00034 * 295.31265 * 12 2 1 24 24 H 1.08997 * 109.47512 * 180.02562 * 1 2 3 25 25 H 1.09001 * 109.47149 * 300.00443 * 1 2 3 26 26 H 1.09006 * 109.47003 * 60.00136 * 1 2 3 27 27 H 0.97004 * 119.99996 * 180.02562 * 7 6 4 28 28 H 1.09004 * 109.48927 * 63.22863 * 13 12 2 29 29 H 1.08995 * 109.50869 * 303.16764 * 13 12 2 30 30 H 1.09006 * 109.48176 * 181.63122 * 14 13 12 31 31 H 1.09000 * 109.50609 * 61.58218 * 14 13 12 32 32 H 1.08002 * 120.03613 * 359.97438 * 17 16 15 33 33 H 1.08000 * 119.96768 * 179.97438 * 18 17 16 34 34 H 1.08002 * 119.92754 * 179.72542 * 19 18 17 35 35 H 1.07997 * 119.96556 * 179.97438 * 20 19 18 36 36 H 1.07996 * 120.04457 * 179.97438 * 21 20 19 37 37 H 1.08996 * 109.48387 * 60.64686 * 22 15 14 38 38 H 1.08997 * 109.48630 * 180.71209 * 22 15 14 39 39 H 1.09003 * 109.48845 * 296.77834 * 23 12 2 40 40 H 1.09000 * 109.48818 * 56.82435 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 1.2305 5 1 2.5792 -1.6367 1.1338 6 6 1.7936 -0.1780 2.4797 7 7 1.1281 0.9502 2.5974 8 14 2.4168 -1.0582 4.0048 9 1 3.8960 -1.1730 3.9405 10 1 2.0329 -0.2858 5.2138 11 1 1.8174 -2.4151 4.0728 12 7 2.0197 -0.6926 -1.1995 13 6 3.4746 -0.5393 -1.3390 14 6 3.9326 -1.2053 -2.6386 15 7 3.5552 -2.6254 -2.6179 16 6 4.0208 -3.2839 -3.7582 17 6 3.7678 -4.6386 -3.9319 18 6 4.2291 -5.2865 -5.0608 19 6 4.9427 -4.5882 -6.0177 20 6 5.1963 -3.2394 -5.8480 21 6 4.7378 -2.5853 -4.7214 22 6 2.1003 -2.7787 -2.4782 23 6 1.6422 -2.1127 -1.1786 24 1 -0.3634 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 0.9605 1.3250 3.4762 28 1 3.9729 -1.0123 -0.4927 29 1 3.7281 0.5205 -1.3644 30 1 5.0153 -1.1180 -2.7299 31 1 3.4554 -0.7146 -3.4869 32 1 3.2109 -5.1847 -3.1847 33 1 4.0332 -6.3399 -5.1963 34 1 5.3062 -5.0982 -6.8975 35 1 5.7542 -2.6970 -6.5969 36 1 4.9365 -1.5321 -4.5892 37 1 1.6020 -2.3057 -3.3244 38 1 1.8471 -3.8385 -2.4527 39 1 2.1197 -2.6035 -0.3305 40 1 0.5596 -2.1999 -1.0869 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048208915.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:45:57 Heat of formation + Delta-G solvation = 45.071723 kcal Electronic energy + Delta-G solvation = -19710.872151 eV Core-core repulsion = 16911.609120 eV Total energy + Delta-G solvation = -2799.263031 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.11310 -37.96504 -35.49343 -32.62497 -31.39287 -30.29095 -30.10123 -28.26291 -25.34509 -24.96758 -23.72599 -21.79376 -21.43337 -20.11943 -19.08026 -17.53297 -16.27371 -15.61443 -15.34323 -15.05258 -14.45321 -14.28315 -14.14251 -13.69585 -13.43888 -13.37091 -13.14634 -12.59379 -12.29200 -11.82946 -11.45579 -11.32471 -11.16938 -10.99222 -10.87394 -10.76744 -10.61304 -10.53873 -10.14234 -9.89151 -9.65725 -9.47263 -9.19041 -8.89528 -8.41089 -7.65008 -7.18414 -6.01448 -4.12698 1.44717 1.46898 3.28541 3.33456 3.36691 3.75053 4.09003 4.39935 4.89136 4.95714 5.00042 5.17059 5.26038 5.29183 5.45279 5.49326 5.52758 5.70139 5.80322 5.84006 5.88083 6.02960 6.07249 6.17080 6.42888 6.43689 6.54261 6.58745 6.69943 6.78399 6.87958 6.90030 7.01386 7.14095 7.26365 7.49632 7.51064 7.68496 7.90916 8.10938 8.25972 8.40524 8.96921 9.55099 11.00777 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.034292 B = 0.004698 C = 0.004541 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 816.313999 B = 5958.662629 C = 6164.191821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C 0.206 3.794 3 H 0.042 0.958 4 C -0.543 4.543 5 H 0.058 0.942 6 C 0.069 3.931 7 N -0.888 5.888 8 Si 0.887 3.113 9 H -0.278 1.278 10 H -0.287 1.287 11 H -0.277 1.277 12 N -0.539 5.539 13 C 0.063 3.937 14 C 0.056 3.944 15 N -0.489 5.489 16 C 0.125 3.875 17 C -0.146 4.146 18 C -0.097 4.097 19 C -0.159 4.159 20 C -0.095 4.095 21 C -0.176 4.176 22 C 0.063 3.937 23 C 0.059 3.941 24 H 0.027 0.973 25 H 0.074 0.926 26 H 0.016 0.984 27 H 0.262 0.738 28 H 0.048 0.952 29 H 0.072 0.928 30 H 0.075 0.925 31 H 0.048 0.952 32 H 0.123 0.877 33 H 0.119 0.881 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.127 0.873 37 H 0.044 0.956 38 H 0.075 0.925 39 H 0.051 0.949 40 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.877 -7.815 -13.891 16.668 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.100 3.900 3 H 0.060 0.940 4 C -0.582 4.582 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.526 5.526 8 Si 0.715 3.285 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.203 1.203 12 N -0.263 5.263 13 C -0.066 4.066 14 C -0.071 4.071 15 N -0.204 5.204 16 C 0.026 3.974 17 C -0.167 4.167 18 C -0.115 4.115 19 C -0.178 4.178 20 C -0.113 4.113 21 C -0.197 4.197 22 C -0.062 4.062 23 C -0.070 4.070 24 H 0.046 0.954 25 H 0.093 0.907 26 H 0.035 0.965 27 H 0.072 0.928 28 H 0.066 0.934 29 H 0.090 0.910 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.141 0.859 33 H 0.137 0.863 34 H 0.134 0.866 35 H 0.136 0.864 36 H 0.144 0.856 37 H 0.063 0.937 38 H 0.093 0.907 39 H 0.069 0.931 40 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.738 -7.608 -13.652 16.331 hybrid contribution 0.496 -0.532 1.125 1.340 sum 5.234 -8.139 -12.527 15.829 Atomic orbital electron populations 1.21736 0.97911 0.98933 0.99813 1.19270 0.92130 0.94302 0.84266 0.93981 1.21675 1.35948 1.08800 0.91807 0.92408 1.24903 0.94843 0.94751 0.98868 1.69903 1.40077 1.18822 1.23796 0.86737 0.79342 0.79797 0.82606 1.20351 1.21271 1.20309 1.62697 1.10655 1.10848 1.42136 1.21942 0.90375 0.99471 0.94849 1.22424 0.99922 0.85576 0.99212 1.59168 1.14239 1.13604 1.33340 1.19147 0.96430 0.93514 0.88324 1.20816 1.03851 0.93124 0.98872 1.20965 0.97316 0.99441 0.93814 1.20983 1.02093 0.94762 0.99993 1.20968 0.98726 0.94649 0.97000 1.21361 1.03830 1.00201 0.94279 1.22399 0.83965 1.00489 0.99325 1.22039 1.00456 0.89983 0.94513 0.95389 0.90694 0.96508 0.92848 0.93354 0.90965 0.90630 0.93401 0.85903 0.86281 0.86635 0.86428 0.85557 0.93718 0.90706 0.93089 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.98 8.92 37.16 0.33 -2.64 16 2 C 0.21 5.06 2.23 -68.86 -0.15 4.91 16 3 H 0.04 1.14 8.05 -51.93 -0.42 0.72 16 4 C -0.54 -14.39 7.11 -34.44 -0.24 -14.63 16 5 H 0.06 1.55 5.81 -52.49 -0.30 1.25 16 6 C 0.07 1.87 5.32 -17.82 -0.09 1.78 16 7 N -0.89 -24.94 11.73 55.43 0.65 -24.29 16 8 Si 0.89 21.15 29.54 -169.99 -5.02 16.13 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.22 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 12 N -0.54 -11.27 4.67 -227.87 -1.06 -12.34 16 13 C 0.06 1.20 5.36 -3.77 -0.02 1.18 16 14 C 0.06 0.89 4.29 -3.77 -0.02 0.87 16 15 N -0.49 -7.93 4.75 -170.96 -0.81 -8.74 16 16 C 0.12 1.82 5.64 -83.79 -0.47 1.35 16 17 C -0.15 -1.93 9.19 -39.38 -0.36 -2.30 16 18 C -0.10 -1.10 10.04 -39.61 -0.40 -1.50 16 19 C -0.16 -1.73 10.04 -39.55 -0.40 -2.13 16 20 C -0.09 -1.08 10.04 -39.61 -0.40 -1.48 16 21 C -0.18 -2.32 8.82 -39.38 -0.35 -2.66 16 22 C 0.06 1.03 5.38 -3.77 -0.02 1.01 16 23 C 0.06 1.14 4.96 -3.77 -0.02 1.12 16 24 H 0.03 0.63 6.45 -51.93 -0.33 0.29 16 25 H 0.07 1.94 6.51 -51.93 -0.34 1.60 16 26 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 27 H 0.26 7.06 8.31 -40.82 -0.34 6.73 16 28 H 0.05 1.04 7.23 -51.93 -0.38 0.66 16 29 H 0.07 1.36 8.09 -51.93 -0.42 0.94 16 30 H 0.08 1.09 7.17 -51.93 -0.37 0.72 16 31 H 0.05 0.75 7.58 -51.93 -0.39 0.35 16 32 H 0.12 1.54 7.18 -52.49 -0.38 1.16 16 33 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 34 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 36 H 0.13 1.56 5.81 -52.49 -0.31 1.25 16 37 H 0.04 0.73 8.14 -51.93 -0.42 0.30 16 38 H 0.07 1.08 6.82 -51.93 -0.35 0.72 16 39 H 0.05 1.10 6.24 -51.93 -0.32 0.77 16 40 H 0.08 1.49 6.28 -51.93 -0.33 1.17 16 LS Contribution 307.35 15.07 4.63 4.63 Total: -1.00 -28.01 307.35 -10.12 -38.13 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -5.89 Total: 1.62 kcal Atomic # 6 Polarization: -12.52 SS G_CDS: -2.61 Total: -15.14 kcal Atomic # 7 Polarization: -44.14 SS G_CDS: -1.23 Total: -45.37 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.13 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -28.01 -10.12 -38.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048208915.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.197 kcal (2) G-P(sol) polarization free energy of solvation -28.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.125 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds