Wall clock time and date at job start Mon Mar 30 2020 06:46:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 N 1.46904 * 109.46700 * 119.99641 * 2 1 3 13 13 C 1.46964 * 111.00038 * 58.79872 * 12 2 1 14 14 C 1.53051 * 109.36420 * 176.81075 * 13 12 2 15 15 N 1.46960 * 109.36247 * 58.39937 * 14 13 12 16 16 C 1.39670 * 110.99598 * 176.80940 * 15 14 13 17 17 C 1.38911 * 120.07236 * 123.52555 * 16 15 14 18 18 C 1.38109 * 119.92306 * 179.76945 * 17 16 15 19 19 C 1.38281 * 120.07587 * 0.50723 * 18 17 16 20 20 C 1.38285 * 120.14875 * 359.74476 * 19 18 17 21 21 C 1.38103 * 120.07517 * 0.02562 * 20 19 18 22 22 C 1.46951 * 110.88116 * 300.67971 * 15 14 13 23 23 C 1.46951 * 111.00033 * 295.00057 * 12 2 1 24 24 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 26 26 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 27 27 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.48393 * 296.78047 * 13 12 2 29 29 H 1.08999 * 109.48636 * 56.84050 * 13 12 2 30 30 H 1.09001 * 109.48645 * 298.43554 * 14 13 12 31 31 H 1.08997 * 109.48506 * 178.36857 * 14 13 12 32 32 H 1.07997 * 120.04170 * 0.02562 * 17 16 15 33 33 H 1.08004 * 119.95943 * 180.25572 * 18 17 16 34 34 H 1.08001 * 119.92892 * 179.77267 * 19 18 17 35 35 H 1.08006 * 119.96200 * 180.02562 * 20 19 18 36 36 H 1.08001 * 120.03487 * 179.97438 * 21 20 19 37 37 H 1.08994 * 109.48852 * 299.34889 * 22 15 14 38 38 H 1.09007 * 109.48569 * 179.28925 * 22 15 14 39 39 H 1.09002 * 109.49323 * 303.15469 * 23 12 2 40 40 H 1.09002 * 109.49228 * 63.20132 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 3.1582 -2.2790 -3.6035 10 1 1.1769 -1.5865 -4.8186 11 1 3.1508 -0.1779 -4.8137 12 7 2.0196 -0.6925 1.1995 13 6 1.5250 -2.0755 1.2480 14 6 2.1199 -2.7848 2.4668 15 7 1.7488 -2.0527 3.6859 16 6 2.2143 -2.7111 4.8263 17 6 3.0381 -2.0467 5.7261 18 6 3.4927 -2.6993 6.8552 19 6 3.1373 -4.0157 7.0852 20 6 2.3216 -4.6816 6.1889 21 6 1.8596 -4.0336 5.0602 22 6 2.2434 -0.6697 3.6373 23 6 1.6485 0.0395 2.4185 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 0.7043 1.1577 -3.4845 28 1 0.4378 -2.0703 1.3250 29 1 1.8231 -2.6003 0.3404 30 1 3.2058 -2.8139 2.3765 31 1 1.7317 -3.8018 2.5210 32 1 3.3194 -1.0199 5.5450 33 1 4.1299 -2.1820 7.5573 34 1 3.4971 -4.5248 7.9671 35 1 2.0455 -5.7096 6.3717 36 1 1.2229 -4.5544 4.3603 37 1 3.3306 -0.6749 3.5604 38 1 1.9452 -0.1449 4.5450 39 1 2.0366 1.0567 2.3644 40 1 0.5626 0.0690 2.5087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048208918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:01 Heat of formation + Delta-G solvation = 47.648811 kcal Electronic energy + Delta-G solvation = -19645.575904 eV Core-core repulsion = 16846.424624 eV Total energy + Delta-G solvation = -2799.151280 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.16256 -38.05392 -35.56249 -32.71841 -31.42234 -30.23690 -30.13863 -28.11522 -25.38544 -25.08613 -23.78776 -21.84174 -21.54305 -20.48499 -18.72815 -17.54702 -16.21090 -15.69546 -15.34042 -15.08826 -14.49167 -14.29606 -14.13165 -13.83021 -13.48767 -13.36185 -13.15544 -12.59145 -12.48665 -11.75982 -11.55343 -11.46916 -11.14780 -11.13203 -10.95255 -10.78351 -10.62939 -10.42027 -10.28792 -9.99328 -9.72514 -9.52116 -8.92061 -8.86248 -8.40834 -7.69592 -7.18166 -6.02876 -4.07029 1.42161 1.44091 3.28736 3.36874 3.40927 3.71787 4.05610 4.39538 4.86489 4.90931 4.97235 5.14407 5.23307 5.29211 5.42360 5.45951 5.47934 5.65369 5.75037 5.78432 5.83619 5.98091 6.03659 6.11187 6.33776 6.41569 6.43173 6.56308 6.56845 6.61502 6.80076 6.83938 6.88584 7.11688 7.17984 7.45344 7.48228 7.70857 7.81085 8.08848 8.35776 8.56417 8.98872 9.58346 11.04141 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039543 B = 0.004420 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.912675 B = 6333.301159 C = 6658.396252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.211 3.789 3 H 0.040 0.960 4 C -0.501 4.501 5 H 0.063 0.937 6 C 0.059 3.941 7 N -0.893 5.893 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.284 1.284 12 N -0.532 5.532 13 C 0.062 3.938 14 C 0.062 3.938 15 N -0.491 5.491 16 C 0.124 3.876 17 C -0.175 4.175 18 C -0.095 4.095 19 C -0.158 4.158 20 C -0.097 4.097 21 C -0.145 4.145 22 C 0.057 3.943 23 C 0.052 3.948 24 H 0.030 0.970 25 H 0.008 0.992 26 H 0.088 0.912 27 H 0.260 0.740 28 H 0.037 0.963 29 H 0.091 0.909 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.127 0.873 33 H 0.118 0.882 34 H 0.116 0.884 35 H 0.120 0.880 36 H 0.123 0.877 37 H 0.051 0.949 38 H 0.076 0.924 39 H 0.074 0.926 40 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.486 -6.960 15.540 17.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C 0.105 3.895 3 H 0.058 0.942 4 C -0.539 4.539 5 H 0.081 0.919 6 C -0.142 4.142 7 N -0.533 5.533 8 Si 0.724 3.276 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.211 1.211 12 N -0.257 5.257 13 C -0.067 4.067 14 C -0.063 4.063 15 N -0.206 5.206 16 C 0.025 3.975 17 C -0.196 4.196 18 C -0.113 4.113 19 C -0.177 4.177 20 C -0.115 4.115 21 C -0.166 4.166 22 C -0.070 4.070 23 C -0.077 4.077 24 H 0.049 0.951 25 H 0.027 0.973 26 H 0.106 0.894 27 H 0.070 0.930 28 H 0.055 0.945 29 H 0.109 0.891 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.144 0.856 33 H 0.136 0.864 34 H 0.134 0.866 35 H 0.138 0.862 36 H 0.141 0.859 37 H 0.069 0.931 38 H 0.094 0.906 39 H 0.092 0.908 40 H 0.055 0.945 Dipole moment (debyes) X Y Z Total from point charges 2.390 -6.794 15.280 16.892 hybrid contribution 0.039 -0.310 -0.805 0.864 sum 2.429 -7.104 14.475 16.306 Atomic orbital electron populations 1.22388 1.00715 0.99380 1.00548 1.19298 0.89867 0.94531 0.85816 0.94243 1.21140 1.30455 1.12647 0.89685 0.91932 1.24929 0.95196 0.95100 0.99016 1.69897 1.36864 1.23208 1.23306 0.86474 0.78556 0.79645 0.82936 1.19754 1.21165 1.21067 1.62538 1.59275 1.01489 1.02386 1.22068 0.97355 0.91071 0.96183 1.22427 0.99300 0.96746 0.87851 1.59223 1.56105 1.03536 1.01704 1.19126 0.92504 0.93014 0.92852 1.21364 0.99763 1.01385 0.97119 1.20974 0.98942 0.94740 0.96685 1.20991 1.01270 0.95200 1.00264 1.20973 0.97123 0.99462 0.93978 1.20817 1.02784 0.93882 0.99099 1.22369 0.98412 0.87293 0.98950 1.22106 0.98313 0.97342 0.89950 0.95142 0.97266 0.89358 0.93048 0.94509 0.89068 0.93364 0.90599 0.85565 0.86396 0.86597 0.86242 0.85886 0.93070 0.90607 0.90772 0.94451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.12 8.27 37.16 0.31 -3.81 16 2 C 0.21 5.22 2.35 -68.86 -0.16 5.06 16 3 H 0.04 1.08 8.11 -51.93 -0.42 0.65 16 4 C -0.50 -13.43 7.89 -34.44 -0.27 -13.70 16 5 H 0.06 1.68 6.78 -52.49 -0.36 1.32 16 6 C 0.06 1.59 5.31 -17.82 -0.09 1.50 16 7 N -0.89 -25.18 11.31 55.43 0.63 -24.55 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.06 16 9 H -0.27 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.69 7.11 56.52 0.40 -6.29 16 11 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 12 N -0.53 -11.24 4.69 -227.87 -1.07 -12.31 16 13 C 0.06 1.20 4.86 -3.76 -0.02 1.18 16 14 C 0.06 1.00 5.38 -3.76 -0.02 0.98 16 15 N -0.49 -7.72 4.75 -170.96 -0.81 -8.53 16 16 C 0.12 1.77 5.64 -83.79 -0.47 1.29 16 17 C -0.18 -2.26 8.82 -39.38 -0.35 -2.61 16 18 C -0.09 -1.06 10.04 -39.61 -0.40 -1.46 16 19 C -0.16 -1.69 10.04 -39.55 -0.40 -2.09 16 20 C -0.10 -1.08 10.04 -39.61 -0.40 -1.47 16 21 C -0.15 -1.88 9.19 -39.38 -0.36 -2.24 16 22 C 0.06 0.87 4.29 -3.77 -0.02 0.86 16 23 C 0.05 0.94 5.25 -3.77 -0.02 0.92 16 24 H 0.03 0.71 6.45 -51.93 -0.34 0.38 16 25 H 0.01 0.19 6.59 -51.93 -0.34 -0.15 16 26 H 0.09 2.35 6.06 -51.93 -0.31 2.03 16 27 H 0.26 6.99 8.31 -40.82 -0.34 6.65 16 28 H 0.04 0.74 6.46 -51.93 -0.34 0.41 16 29 H 0.09 1.88 6.45 -51.93 -0.34 1.55 16 30 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.08 1.09 6.82 -51.93 -0.35 0.74 16 32 H 0.13 1.52 5.81 -52.49 -0.31 1.22 16 33 H 0.12 1.05 8.06 -52.48 -0.42 0.62 16 34 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 35 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.12 1.50 7.19 -52.49 -0.38 1.12 16 37 H 0.05 0.80 7.57 -51.93 -0.39 0.40 16 38 H 0.08 1.03 7.18 -51.92 -0.37 0.66 16 39 H 0.07 1.31 8.12 -51.93 -0.42 0.88 16 40 H 0.04 0.71 6.60 -51.93 -0.34 0.37 16 LS Contribution 305.81 15.07 4.61 4.61 Total: -1.00 -28.26 305.81 -10.17 -38.43 By element: Atomic # 1 Polarization: 7.70 SS G_CDS: -5.83 Total: 1.87 kcal Atomic # 6 Polarization: -12.92 SS G_CDS: -2.67 Total: -15.59 kcal Atomic # 7 Polarization: -44.13 SS G_CDS: -1.25 Total: -45.38 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -28.26 -10.17 -38.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048208918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.082 kcal (2) G-P(sol) polarization free energy of solvation -28.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.819 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.170 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.434 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds