Wall clock time and date at job start Mon Mar 30 2020 06:46:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.08998 * 109.47109 * 2 1 4 4 C 1.50697 * 109.47303 * 239.99210 * 2 1 3 5 5 H 1.07991 * 120.00449 * 239.72787 * 4 2 1 6 6 C 1.37885 * 119.99686 * 60.00618 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.72095 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.72528 * 6 4 2 9 9 H 1.48490 * 109.47339 * 359.97438 * 8 6 4 10 10 H 1.48493 * 109.47239 * 120.00108 * 8 6 4 11 11 H 1.48504 * 109.46636 * 239.99667 * 8 6 4 12 12 N 1.46904 * 109.46700 * 119.99641 * 2 1 3 13 13 C 1.46964 * 111.00038 * 58.79872 * 12 2 1 14 14 C 1.53051 * 109.36420 * 176.81075 * 13 12 2 15 15 N 1.46960 * 109.36247 * 58.39937 * 14 13 12 16 16 C 1.39670 * 110.99598 * 176.80940 * 15 14 13 17 17 C 1.38911 * 120.07236 * 123.52555 * 16 15 14 18 18 C 1.38109 * 119.92306 * 179.76945 * 17 16 15 19 19 C 1.38281 * 120.07587 * 0.50723 * 18 17 16 20 20 C 1.38285 * 120.14875 * 359.74476 * 19 18 17 21 21 C 1.38103 * 120.07517 * 0.02562 * 20 19 18 22 22 C 1.46951 * 110.88116 * 300.67971 * 15 14 13 23 23 C 1.46951 * 111.00033 * 295.00057 * 12 2 1 24 24 H 1.08998 * 109.47109 * 180.02562 * 1 2 3 25 25 H 1.08994 * 109.47204 * 300.00358 * 1 2 3 26 26 H 1.09006 * 109.46531 * 60.00353 * 1 2 3 27 27 H 0.97000 * 119.99651 * 180.02562 * 7 6 4 28 28 H 1.09000 * 109.48393 * 296.78047 * 13 12 2 29 29 H 1.08999 * 109.48636 * 56.84050 * 13 12 2 30 30 H 1.09001 * 109.48645 * 298.43554 * 14 13 12 31 31 H 1.08997 * 109.48506 * 178.36857 * 14 13 12 32 32 H 1.07997 * 120.04170 * 0.02562 * 17 16 15 33 33 H 1.08004 * 119.95943 * 180.25572 * 18 17 16 34 34 H 1.08001 * 119.92892 * 179.77267 * 19 18 17 35 35 H 1.08006 * 119.96200 * 180.02562 * 20 19 18 36 36 H 1.08001 * 120.03487 * 179.97438 * 21 20 19 37 37 H 1.08994 * 109.48852 * 299.34889 * 22 15 14 38 38 H 1.09007 * 109.48569 * 179.28925 * 22 15 14 39 39 H 1.09002 * 109.49323 * 303.15469 * 23 12 2 40 40 H 1.09002 * 109.49228 * 63.20132 * 23 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7106 -1.2303 5 1 2.6569 -1.5860 -1.1312 6 6 1.6994 -0.2395 -2.4827 7 7 0.9389 0.8266 -2.6035 8 14 2.3284 -1.1158 -4.0078 9 1 3.1582 -2.2790 -3.6035 10 1 1.1769 -1.5865 -4.8186 11 1 3.1508 -0.1779 -4.8137 12 7 2.0196 -0.6925 1.1995 13 6 1.5250 -2.0755 1.2480 14 6 2.1199 -2.7848 2.4668 15 7 1.7488 -2.0527 3.6859 16 6 2.2143 -2.7111 4.8263 17 6 3.0381 -2.0467 5.7261 18 6 3.4927 -2.6993 6.8552 19 6 3.1373 -4.0157 7.0852 20 6 2.3216 -4.6816 6.1889 21 6 1.8596 -4.0336 5.0602 22 6 2.2434 -0.6697 3.6373 23 6 1.6485 0.0395 2.4185 24 1 -0.3633 -1.0276 0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8901 27 1 0.7043 1.1577 -3.4845 28 1 0.4378 -2.0703 1.3250 29 1 1.8231 -2.6003 0.3404 30 1 3.2058 -2.8139 2.3765 31 1 1.7317 -3.8018 2.5210 32 1 3.3194 -1.0199 5.5450 33 1 4.1299 -2.1820 7.5573 34 1 3.4971 -4.5248 7.9671 35 1 2.0455 -5.7096 6.3717 36 1 1.2229 -4.5544 4.3603 37 1 3.3306 -0.6749 3.5604 38 1 1.9452 -0.1449 4.5450 39 1 2.0366 1.0567 2.3644 40 1 0.5626 0.0690 2.5087 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048208918.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:00 Heat of formation + Delta-G solvation = 30.638439 kcal Electronic energy + Delta-G solvation = -19646.313529 eV Core-core repulsion = 16846.424624 eV Total energy + Delta-G solvation = -2799.888905 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.31264 -39.36992 -36.99135 -34.60223 -32.55101 -31.70903 -31.32158 -29.54675 -27.37580 -26.57566 -25.08282 -23.16669 -22.60535 -21.95204 -20.25921 -18.61036 -18.20937 -16.97638 -16.64205 -16.43615 -15.96165 -15.67646 -15.58029 -15.12779 -14.82969 -14.65322 -14.37525 -14.20474 -13.74432 -13.40402 -13.04956 -12.95919 -12.72967 -12.58605 -12.39876 -12.32799 -12.26596 -12.00050 -11.95983 -11.61215 -11.42766 -10.89490 -10.59653 -10.50140 -9.80684 -8.91411 -8.74966 -8.11232 -6.22278 0.50904 0.53790 1.41645 1.43822 1.55223 2.42805 2.68558 3.02902 3.18117 3.31388 3.86201 3.98782 4.11855 4.13946 4.28406 4.33702 4.37076 4.41558 4.60247 4.62635 4.64211 4.70628 4.79962 4.81053 4.88881 4.96516 5.01360 5.08653 5.17201 5.19346 5.36014 5.52734 5.56615 5.69498 5.69911 5.77458 5.92266 6.04894 6.18095 6.38566 6.47370 6.70249 6.90843 7.47137 8.95224 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.039543 B = 0.004420 C = 0.004204 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.912675 B = 6333.301159 C = 6658.396252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.215 3.785 3 H 0.008 0.992 4 C -0.514 4.514 5 H 0.058 0.942 6 C 0.012 3.988 7 N -0.921 5.921 8 Si 0.959 3.041 9 H -0.267 1.267 10 H -0.281 1.281 11 H -0.282 1.282 12 N -0.540 5.540 13 C 0.067 3.933 14 C 0.074 3.926 15 N -0.499 5.499 16 C 0.097 3.903 17 C -0.186 4.186 18 C -0.099 4.099 19 C -0.154 4.154 20 C -0.099 4.099 21 C -0.157 4.157 22 C 0.067 3.933 23 C 0.052 3.948 24 H 0.029 0.971 25 H 0.023 0.977 26 H 0.062 0.938 27 H 0.261 0.739 28 H 0.026 0.974 29 H 0.073 0.927 30 H 0.041 0.959 31 H 0.095 0.905 32 H 0.130 0.870 33 H 0.142 0.858 34 H 0.144 0.856 35 H 0.145 0.855 36 H 0.124 0.876 37 H 0.050 0.950 38 H 0.097 0.903 39 H 0.075 0.925 40 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.268 -8.510 17.375 19.621 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.108 3.892 3 H 0.026 0.974 4 C -0.552 4.552 5 H 0.076 0.924 6 C -0.187 4.187 7 N -0.561 5.561 8 Si 0.785 3.215 9 H -0.191 1.191 10 H -0.207 1.207 11 H -0.208 1.208 12 N -0.265 5.265 13 C -0.061 4.061 14 C -0.051 4.051 15 N -0.215 5.215 16 C 0.000 4.000 17 C -0.207 4.207 18 C -0.117 4.117 19 C -0.173 4.173 20 C -0.117 4.117 21 C -0.178 4.178 22 C -0.060 4.060 23 C -0.076 4.076 24 H 0.048 0.952 25 H 0.042 0.958 26 H 0.081 0.919 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.092 0.908 30 H 0.059 0.941 31 H 0.113 0.887 32 H 0.148 0.852 33 H 0.160 0.840 34 H 0.162 0.838 35 H 0.162 0.838 36 H 0.142 0.858 37 H 0.068 0.932 38 H 0.115 0.885 39 H 0.093 0.907 40 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 3.179 -8.357 17.148 19.339 hybrid contribution -0.181 0.148 -1.253 1.274 sum 2.998 -8.208 15.895 18.139 Atomic orbital electron populations 1.22174 1.00365 0.99024 0.99889 1.19054 0.89982 0.93026 0.87125 0.97414 1.21387 1.30435 1.12602 0.90814 0.92422 1.25689 0.95372 0.95762 1.01843 1.70021 1.37746 1.24376 1.23949 0.85483 0.78056 0.78640 0.79310 1.19145 1.20710 1.20794 1.62434 1.59422 1.02328 1.02270 1.21990 0.96775 0.90158 0.97210 1.22248 0.98543 0.97296 0.87060 1.59237 1.56874 1.03437 1.01924 1.19239 0.94243 0.93891 0.92675 1.21525 0.99810 1.01748 0.97601 1.21312 0.98793 0.95194 0.96430 1.21403 1.00104 0.95032 1.00773 1.21311 0.96584 1.00631 0.93208 1.20991 1.03123 0.93599 1.00039 1.22263 0.98030 0.87531 0.98140 1.22160 0.97951 0.97646 0.89867 0.95195 0.95825 0.91949 0.92985 0.95558 0.90828 0.94090 0.88695 0.85235 0.83992 0.83791 0.83761 0.85761 0.93197 0.88454 0.90676 0.95346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.67 8.27 71.98 0.60 -7.07 16 2 C 0.22 10.98 2.35 44.17 0.10 11.08 16 3 H 0.01 0.45 8.11 -2.39 -0.02 0.43 16 4 C -0.51 -28.16 7.89 25.60 0.20 -27.96 16 5 H 0.06 3.15 6.78 -2.92 -0.02 3.13 16 6 C 0.01 0.65 5.31 84.66 0.45 1.10 16 7 N -0.92 -52.96 11.31 21.45 0.24 -52.72 16 8 Si 0.96 43.61 29.54 68.60 2.03 45.64 16 9 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 10 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 11 H -0.28 -12.64 7.11 99.48 0.71 -11.94 16 12 N -0.54 -23.23 4.69 -874.85 -4.10 -27.33 16 13 C 0.07 2.63 4.86 86.31 0.42 3.05 16 14 C 0.07 2.37 5.38 86.31 0.46 2.83 16 15 N -0.50 -15.21 4.75 -694.79 -3.30 -18.51 16 16 C 0.10 2.61 5.64 38.21 0.22 2.83 16 17 C -0.19 -4.41 8.82 22.40 0.20 -4.22 16 18 C -0.10 -1.90 10.04 22.25 0.22 -1.68 16 19 C -0.15 -2.72 10.04 22.29 0.22 -2.50 16 20 C -0.10 -1.89 10.04 22.25 0.22 -1.67 16 21 C -0.16 -3.75 9.19 22.40 0.21 -3.54 16 22 C 0.07 2.02 4.29 86.31 0.37 2.39 16 23 C 0.05 1.91 5.25 86.31 0.45 2.36 16 24 H 0.03 1.43 6.45 -2.39 -0.02 1.41 16 25 H 0.02 1.05 6.59 -2.39 -0.02 1.03 16 26 H 0.06 3.41 6.06 -2.38 -0.01 3.40 16 27 H 0.26 14.26 8.31 -92.71 -0.77 13.49 16 28 H 0.03 1.08 6.46 -2.39 -0.02 1.06 16 29 H 0.07 3.11 6.45 -2.39 -0.02 3.09 16 30 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 31 H 0.09 2.64 6.82 -2.39 -0.02 2.62 16 32 H 0.13 2.88 5.81 -2.91 -0.02 2.86 16 33 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 34 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 35 H 0.14 1.98 8.06 -2.91 -0.02 1.95 16 36 H 0.12 2.83 7.19 -2.91 -0.02 2.81 16 37 H 0.05 1.51 7.57 -2.39 -0.02 1.49 16 38 H 0.10 2.49 7.18 -2.38 -0.02 2.48 16 39 H 0.07 2.68 8.12 -2.39 -0.02 2.66 16 40 H 0.03 1.08 6.60 -2.39 -0.02 1.07 16 Total: -1.00 -61.01 305.81 0.23 -60.78 By element: Atomic # 1 Polarization: 14.13 SS G_CDS: 1.02 Total: 15.15 kcal Atomic # 6 Polarization: -27.35 SS G_CDS: 4.35 Total: -23.00 kcal Atomic # 7 Polarization: -91.40 SS G_CDS: -7.16 Total: -98.56 kcal Atomic # 14 Polarization: 43.61 SS G_CDS: 2.03 Total: 45.64 kcal Total: -61.01 0.23 -60.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048208918.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.419 kcal (2) G-P(sol) polarization free energy of solvation -61.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.409 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.780 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds