Wall clock time and date at job start Mon Mar 30 2020 07:07:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 120.00125 * 2 1 4 4 C 1.50695 * 109.47233 * 270.00267 * 3 2 1 5 5 H 1.08002 * 120.00340 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00119 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99641 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00292 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47029 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47050 * 120.00074 * 8 6 4 11 11 H 1.48501 * 109.46890 * 240.00069 * 8 6 4 12 12 C 1.40005 * 119.99864 * 180.02562 * 2 1 3 13 13 C 1.38861 * 119.99852 * 359.97438 * 12 2 1 14 14 C 1.38095 * 119.99687 * 179.97438 * 13 12 2 15 15 C 1.38857 * 120.00123 * 0.02562 * 14 13 12 16 16 N 1.40005 * 119.99959 * 179.97438 * 15 14 13 17 17 C 1.48533 * 111.00046 * 116.89628 * 16 15 14 18 18 C 1.54930 * 103.22949 * 159.71993 * 17 16 15 19 19 C 1.54600 * 102.91907 * 322.58575 * 18 17 16 20 20 C 1.47898 * 110.99674 * 234.29035 * 16 15 14 21 21 C 1.38859 * 119.99748 * 0.25442 * 15 14 13 22 22 C 1.38088 * 120.00307 * 359.48680 * 21 15 14 23 23 H 1.09005 * 109.46748 * 269.99545 * 1 2 3 24 24 H 1.09000 * 109.47474 * 29.99550 * 1 2 3 25 25 H 1.09004 * 109.47454 * 149.99913 * 1 2 3 26 26 H 1.08997 * 109.47062 * 30.00585 * 3 2 1 27 27 H 1.09003 * 109.47299 * 149.99885 * 3 2 1 28 28 H 0.97007 * 119.99551 * 180.02562 * 7 6 4 29 29 H 1.08000 * 120.00271 * 359.97438 * 13 12 2 30 30 H 1.08007 * 119.99864 * 180.02562 * 14 13 12 31 31 H 1.09005 * 110.66495 * 278.15915 * 17 16 15 32 32 H 1.09002 * 110.66858 * 41.28084 * 17 16 15 33 33 H 1.09000 * 110.72569 * 204.23001 * 18 17 16 34 34 H 1.08995 * 110.72507 * 80.94108 * 18 17 16 35 35 H 1.09002 * 110.30609 * 263.03780 * 19 18 17 36 36 H 1.08995 * 110.30628 * 140.87567 * 19 18 17 37 37 H 1.08998 * 109.92060 * 333.50842 * 20 16 15 38 38 H 1.08999 * 109.91792 * 94.61214 * 20 16 15 39 39 H 1.08003 * 119.99835 * 179.72912 * 21 15 14 40 40 H 1.07998 * 120.00436 * 180.25117 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8779 -1.6727 7 7 3.5533 3.6180 -0.6730 8 14 3.4367 3.4176 -3.4338 9 1 2.8598 2.4171 -4.3672 10 1 2.7986 4.7383 -3.6667 11 1 4.8991 3.5263 -3.6675 12 6 2.1650 -1.2125 -0.0005 13 6 1.4707 -2.4150 -0.0005 14 6 2.1611 -3.6110 -0.0016 15 6 3.5497 -3.6110 -0.0021 16 7 4.2497 -4.8235 -0.0027 17 6 5.0586 -4.9706 -1.2397 18 6 6.1174 -6.0312 -0.8469 19 6 6.4362 -5.6736 0.6230 20 6 5.2131 -4.8797 1.1181 21 6 4.2440 -2.4084 0.0037 22 6 3.5536 -1.2125 -0.0006 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3634 -0.8900 -0.5139 26 1 1.6085 2.0283 0.5139 27 1 3.1500 1.1383 0.5139 28 1 4.0296 4.4443 -0.8503 29 1 0.3907 -2.4150 0.0003 30 1 1.6211 -4.5463 -0.0020 31 1 4.4409 -5.3300 -2.0628 32 1 5.5377 -4.0269 -1.5006 33 1 7.0076 -5.9363 -1.4687 34 1 5.7015 -7.0362 -0.9178 35 1 7.3339 -5.0576 0.6763 36 1 6.5632 -6.5805 1.2140 37 1 5.5144 -3.8708 1.3998 38 1 4.7604 -5.3839 1.9719 39 1 5.3240 -2.4085 0.0077 40 1 4.0936 -0.2772 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049821484.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:47 Heat of formation + Delta-G solvation = 41.090037 kcal Electronic energy + Delta-G solvation = -19258.116580 eV Core-core repulsion = 16458.680890 eV Total energy + Delta-G solvation = -2799.435690 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.78335 -38.00210 -35.31754 -32.78056 -31.53938 -30.49922 -28.79224 -27.94003 -27.52986 -24.80691 -22.83428 -22.06143 -21.00324 -20.80116 -19.45857 -17.17103 -16.53253 -15.95198 -15.80726 -15.02617 -14.34320 -14.11766 -13.93000 -13.70623 -13.27209 -13.00265 -12.90106 -12.79915 -12.19031 -11.99562 -11.64111 -11.46480 -11.34155 -11.28009 -11.27256 -11.08873 -10.93982 -10.72684 -10.59331 -10.34817 -9.97839 -9.75103 -8.78769 -8.53871 -8.32236 -8.26244 -6.47188 -6.03542 -4.19985 2.03474 2.16943 3.23264 3.31492 3.36527 4.10027 4.22125 4.38223 4.43075 4.72778 4.84474 4.97896 5.19132 5.37125 5.42830 5.53038 5.58442 5.75786 5.76425 5.77554 5.82078 5.94784 6.01414 6.02777 6.06459 6.16061 6.19440 6.27516 6.38706 6.58551 6.68029 6.95759 6.97352 7.12572 7.17904 7.31608 7.36202 7.78344 7.87497 8.13094 8.24236 8.45804 8.89538 9.47082 10.93094 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021987 B = 0.004998 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.190963 B = 5601.304864 C = 6312.115214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.098 3.902 2 N -0.616 5.616 3 C 0.248 3.752 4 C -0.531 4.531 5 H 0.060 0.940 6 C 0.061 3.939 7 N -0.895 5.895 8 Si 0.896 3.104 9 H -0.273 1.273 10 H -0.283 1.283 11 H -0.283 1.283 12 C 0.239 3.761 13 C -0.217 4.217 14 C -0.047 4.047 15 C -0.014 4.014 16 N -0.472 5.472 17 C 0.037 3.963 18 C -0.124 4.124 19 C -0.131 4.131 20 C 0.036 3.964 21 C -0.100 4.100 22 C -0.177 4.177 23 H 0.036 0.964 24 H 0.067 0.933 25 H 0.055 0.945 26 H 0.031 0.969 27 H 0.035 0.965 28 H 0.263 0.737 29 H 0.117 0.883 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.068 0.932 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.069 0.931 37 H 0.050 0.950 38 H 0.075 0.925 39 H 0.108 0.892 40 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.527 -15.135 2.083 15.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.322 5.322 3 C 0.129 3.871 4 C -0.570 4.570 5 H 0.078 0.922 6 C -0.141 4.141 7 N -0.534 5.534 8 Si 0.723 3.277 9 H -0.197 1.197 10 H -0.209 1.209 11 H -0.209 1.209 12 C 0.132 3.868 13 C -0.240 4.240 14 C -0.066 4.066 15 C -0.110 4.110 16 N -0.193 5.193 17 C -0.089 4.089 18 C -0.162 4.162 19 C -0.170 4.170 20 C -0.091 4.091 21 C -0.121 4.121 22 C -0.200 4.200 23 H 0.054 0.946 24 H 0.086 0.914 25 H 0.074 0.926 26 H 0.049 0.951 27 H 0.053 0.947 28 H 0.073 0.927 29 H 0.135 0.865 30 H 0.134 0.866 31 H 0.098 0.902 32 H 0.067 0.933 33 H 0.087 0.913 34 H 0.091 0.909 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.093 0.907 39 H 0.126 0.874 40 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.105 -15.144 2.178 15.339 hybrid contribution 0.811 1.230 -1.052 1.810 sum 1.916 -13.914 1.126 14.090 Atomic orbital electron populations 1.21478 0.81417 1.01958 0.99719 1.47180 1.04391 1.04501 1.76102 1.19287 0.92071 0.78783 0.96988 1.21625 1.36313 1.06374 0.92681 0.92187 1.24966 0.95411 0.96289 0.97411 1.69946 1.38420 1.14339 1.30699 0.86472 0.78037 0.78494 0.84664 1.19717 1.20900 1.20858 1.17998 0.91397 0.86077 0.91339 1.20541 0.99154 0.91102 1.13231 1.20477 0.92312 0.96780 0.97058 1.18498 0.93115 0.87723 1.11662 1.62374 1.23418 1.31491 1.02003 1.23313 0.94254 0.97977 0.93387 1.22483 0.98386 0.99475 0.95849 1.22406 0.97754 1.00191 0.96610 1.22965 0.91676 0.99648 0.94838 1.21197 0.98772 0.92653 0.99460 1.20763 0.92717 0.98453 1.08080 0.94576 0.91438 0.92634 0.95142 0.94702 0.92695 0.86502 0.86616 0.90235 0.93323 0.91300 0.90946 0.91668 0.91269 0.93133 0.90656 0.87386 0.85044 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.72 10.19 59.85 0.61 2.33 16 2 N -0.62 -13.21 3.00 -180.93 -0.54 -13.76 16 3 C 0.25 6.23 4.91 -5.20 -0.03 6.21 16 4 C -0.53 -14.48 9.39 -34.44 -0.32 -14.81 16 5 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 6 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 7 N -0.90 -25.61 13.29 55.43 0.74 -24.87 16 8 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 C 0.24 4.87 6.56 -83.66 -0.55 4.32 16 13 C -0.22 -3.83 9.20 -39.40 -0.36 -4.19 16 14 C -0.05 -0.77 9.96 -39.41 -0.39 -1.17 16 15 C -0.01 -0.23 4.87 -83.67 -0.41 -0.64 16 16 N -0.47 -6.84 5.28 -167.10 -0.88 -7.72 16 17 C 0.04 0.48 6.43 -1.90 -0.01 0.47 16 18 C -0.12 -1.26 7.06 -24.87 -0.18 -1.44 16 19 C -0.13 -1.34 6.93 -25.37 -0.18 -1.51 16 20 C 0.04 0.45 6.49 -2.76 -0.02 0.44 16 21 C -0.10 -1.79 7.90 -39.41 -0.31 -2.10 16 22 C -0.18 -3.63 9.20 -39.41 -0.36 -3.99 16 23 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 24 H 0.07 1.20 8.07 -51.93 -0.42 0.79 16 25 H 0.06 0.86 6.20 -51.93 -0.32 0.54 16 26 H 0.03 0.80 8.07 -51.93 -0.42 0.38 16 27 H 0.04 0.92 6.20 -51.93 -0.32 0.60 16 28 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 29 H 0.12 1.84 6.14 -52.49 -0.32 1.52 16 30 H 0.12 1.70 8.06 -52.48 -0.42 1.28 16 31 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 32 H 0.05 0.67 7.04 -51.93 -0.37 0.31 16 33 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 34 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 35 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 36 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 37 H 0.05 0.68 6.29 -51.93 -0.33 0.36 16 38 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 39 H 0.11 1.77 7.03 -52.48 -0.37 1.40 16 40 H 0.13 2.96 6.14 -52.49 -0.32 2.64 16 LS Contribution 319.34 15.07 4.81 4.81 Total: -1.00 -28.76 319.34 -9.62 -38.37 By element: Atomic # 1 Polarization: 7.50 SS G_CDS: -6.11 Total: 1.39 kcal Atomic # 6 Polarization: -11.88 SS G_CDS: -2.60 Total: -14.48 kcal Atomic # 7 Polarization: -45.65 SS G_CDS: -0.69 Total: -46.34 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -28.76 -9.62 -38.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049821484.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.463 kcal (2) G-P(sol) polarization free energy of solvation -28.758 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.373 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds