Wall clock time and date at job start Mon Mar 30 2020 07:07:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46495 * 120.00125 * 2 1 4 4 C 1.50695 * 109.47233 * 270.00267 * 3 2 1 5 5 H 1.08002 * 120.00340 * 359.97438 * 4 3 2 6 6 C 1.37876 * 120.00119 * 179.97438 * 4 3 2 7 7 N 1.31520 * 119.99641 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 120.00292 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47029 * 359.97438 * 8 6 4 10 10 H 1.48507 * 109.47050 * 120.00074 * 8 6 4 11 11 H 1.48501 * 109.46890 * 240.00069 * 8 6 4 12 12 C 1.40005 * 119.99864 * 180.02562 * 2 1 3 13 13 C 1.38861 * 119.99852 * 359.97438 * 12 2 1 14 14 C 1.38095 * 119.99687 * 179.97438 * 13 12 2 15 15 C 1.38857 * 120.00123 * 0.02562 * 14 13 12 16 16 N 1.40005 * 119.99959 * 179.97438 * 15 14 13 17 17 C 1.48533 * 111.00046 * 116.89628 * 16 15 14 18 18 C 1.54930 * 103.22949 * 159.71993 * 17 16 15 19 19 C 1.54600 * 102.91907 * 322.58575 * 18 17 16 20 20 C 1.47898 * 110.99674 * 234.29035 * 16 15 14 21 21 C 1.38859 * 119.99748 * 0.25442 * 15 14 13 22 22 C 1.38088 * 120.00307 * 359.48680 * 21 15 14 23 23 H 1.09005 * 109.46748 * 269.99545 * 1 2 3 24 24 H 1.09000 * 109.47474 * 29.99550 * 1 2 3 25 25 H 1.09004 * 109.47454 * 149.99913 * 1 2 3 26 26 H 1.08997 * 109.47062 * 30.00585 * 3 2 1 27 27 H 1.09003 * 109.47299 * 149.99885 * 3 2 1 28 28 H 0.97007 * 119.99551 * 180.02562 * 7 6 4 29 29 H 1.08000 * 120.00271 * 359.97438 * 13 12 2 30 30 H 1.08007 * 119.99864 * 180.02562 * 14 13 12 31 31 H 1.09005 * 110.66495 * 278.15915 * 17 16 15 32 32 H 1.09002 * 110.66858 * 41.28084 * 17 16 15 33 33 H 1.09000 * 110.72569 * 204.23001 * 18 17 16 34 34 H 1.08995 * 110.72507 * 80.94108 * 18 17 16 35 35 H 1.09002 * 110.30609 * 263.03780 * 19 18 17 36 36 H 1.08995 * 110.30628 * 140.87567 * 19 18 17 37 37 H 1.08998 * 109.92060 * 333.50842 * 20 16 15 38 38 H 1.08999 * 109.91792 * 94.61214 * 20 16 15 39 39 H 1.08003 * 119.99835 * 179.72912 * 21 15 14 40 40 H 1.07998 * 120.00436 * 180.25117 * 22 21 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4486 1.7037 -1.4208 5 1 2.0981 1.0958 -2.2417 6 6 3.1260 2.8779 -1.6727 7 7 3.5533 3.6180 -0.6730 8 14 3.4367 3.4176 -3.4338 9 1 2.8598 2.4171 -4.3672 10 1 2.7986 4.7383 -3.6667 11 1 4.8991 3.5263 -3.6675 12 6 2.1650 -1.2125 -0.0005 13 6 1.4707 -2.4150 -0.0005 14 6 2.1611 -3.6110 -0.0016 15 6 3.5497 -3.6110 -0.0021 16 7 4.2497 -4.8235 -0.0027 17 6 5.0586 -4.9706 -1.2397 18 6 6.1174 -6.0312 -0.8469 19 6 6.4362 -5.6736 0.6230 20 6 5.2131 -4.8797 1.1181 21 6 4.2440 -2.4084 0.0037 22 6 3.5536 -1.2125 -0.0006 23 1 -0.3633 -0.0001 1.0277 24 1 -0.3634 0.8900 -0.5137 25 1 -0.3634 -0.8900 -0.5139 26 1 1.6085 2.0283 0.5139 27 1 3.1500 1.1383 0.5139 28 1 4.0296 4.4443 -0.8503 29 1 0.3907 -2.4150 0.0003 30 1 1.6211 -4.5463 -0.0020 31 1 4.4409 -5.3300 -2.0628 32 1 5.5377 -4.0269 -1.5006 33 1 7.0076 -5.9363 -1.4687 34 1 5.7015 -7.0362 -0.9178 35 1 7.3339 -5.0576 0.6763 36 1 6.5632 -6.5805 1.2140 37 1 5.5144 -3.8708 1.3998 38 1 4.7604 -5.3839 1.9719 39 1 5.3240 -2.4085 0.0077 40 1 4.0936 -0.2772 -0.0001 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049821484.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:46 Heat of formation + Delta-G solvation = 25.437005 kcal Electronic energy + Delta-G solvation = -19258.795346 eV Core-core repulsion = 16458.680890 eV Total energy + Delta-G solvation = -2800.114456 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.05898 -39.33139 -36.81680 -34.77201 -32.75578 -31.98333 -29.79828 -29.73227 -28.87743 -26.50509 -24.48540 -23.44311 -22.35223 -21.71261 -20.85705 -18.66013 -18.52722 -17.24241 -17.12073 -16.58178 -16.00814 -15.52012 -15.36118 -14.96194 -14.64000 -14.37524 -14.30359 -14.02858 -13.89392 -13.24195 -13.11568 -13.06875 -12.85396 -12.74321 -12.57939 -12.52949 -12.22018 -12.16729 -12.03568 -11.71519 -11.60120 -11.40682 -10.66449 -10.36398 -9.76470 -9.44667 -8.37979 -7.81959 -6.39351 0.58747 0.72708 1.34731 1.36436 1.48678 2.32565 2.59211 2.98554 3.04573 3.10337 3.79234 3.95464 4.01164 4.11861 4.18905 4.37748 4.40304 4.54926 4.60567 4.65764 4.70815 4.78776 4.81807 4.93217 4.97992 5.00311 5.01523 5.08750 5.15066 5.20492 5.21366 5.33474 5.39225 5.54433 5.66560 5.72947 5.91028 5.95551 6.05351 6.44781 6.56979 6.80614 6.90164 7.32698 8.81623 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021987 B = 0.004998 C = 0.004435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1273.190963 B = 5601.304864 C = 6312.115214 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.097 3.903 2 N -0.631 5.631 3 C 0.266 3.734 4 C -0.541 4.541 5 H 0.049 0.951 6 C 0.013 3.987 7 N -0.927 5.927 8 Si 0.962 3.038 9 H -0.271 1.271 10 H -0.273 1.273 11 H -0.278 1.278 12 C 0.212 3.788 13 C -0.205 4.205 14 C -0.046 4.046 15 C -0.003 4.003 16 N -0.476 5.476 17 C 0.031 3.969 18 C -0.115 4.115 19 C -0.126 4.126 20 C 0.030 3.970 21 C -0.100 4.100 22 C -0.203 4.203 23 H 0.054 0.946 24 H 0.057 0.943 25 H 0.080 0.920 26 H 0.011 0.989 27 H 0.010 0.990 28 H 0.267 0.733 29 H 0.141 0.859 30 H 0.144 0.856 31 H 0.082 0.918 32 H 0.034 0.966 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.070 0.930 36 H 0.088 0.912 37 H 0.036 0.964 38 H 0.081 0.919 39 H 0.115 0.885 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.401 -17.609 1.298 17.712 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.339 5.339 3 C 0.144 3.856 4 C -0.580 4.580 5 H 0.068 0.932 6 C -0.186 4.186 7 N -0.567 5.567 8 Si 0.787 3.213 9 H -0.195 1.195 10 H -0.199 1.199 11 H -0.203 1.203 12 C 0.107 3.893 13 C -0.229 4.229 14 C -0.065 4.065 15 C -0.099 4.099 16 N -0.197 5.197 17 C -0.096 4.096 18 C -0.153 4.153 19 C -0.164 4.164 20 C -0.097 4.097 21 C -0.121 4.121 22 C -0.226 4.226 23 H 0.072 0.928 24 H 0.076 0.924 25 H 0.098 0.902 26 H 0.029 0.971 27 H 0.028 0.972 28 H 0.076 0.924 29 H 0.159 0.841 30 H 0.162 0.838 31 H 0.100 0.900 32 H 0.053 0.947 33 H 0.103 0.897 34 H 0.102 0.898 35 H 0.089 0.911 36 H 0.107 0.893 37 H 0.054 0.946 38 H 0.100 0.900 39 H 0.133 0.867 40 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 0.973 -17.656 1.398 17.738 hybrid contribution 0.887 1.869 -0.759 2.204 sum 1.860 -15.787 0.639 15.909 Atomic orbital electron populations 1.21630 0.79185 1.02670 1.01091 1.47052 1.05706 1.03523 1.77592 1.18784 0.91069 0.80281 0.95466 1.21809 1.36388 1.06484 0.93316 0.93247 1.25776 0.95056 0.96308 1.01475 1.70049 1.39040 1.14803 1.32761 0.85452 0.78012 0.78231 0.79654 1.19518 1.19865 1.20331 1.18240 0.91429 0.86648 0.92938 1.20779 1.00331 0.90136 1.11614 1.20816 0.92357 0.97458 0.95864 1.18728 0.93643 0.88098 1.09410 1.62487 1.24362 1.29556 1.03291 1.23406 0.94927 0.98401 0.92838 1.22478 0.98070 0.98909 0.95880 1.22408 0.96589 1.00679 0.96772 1.23061 0.92533 0.99501 0.94577 1.21270 0.99209 0.92395 0.99214 1.20641 0.93322 0.98064 1.10569 0.92789 0.92422 0.90174 0.97095 0.97223 0.92382 0.84113 0.83841 0.89974 0.94720 0.89714 0.89847 0.91110 0.89346 0.94557 0.90021 0.86689 0.88458 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 3.35 10.19 127.77 1.30 4.65 16 2 N -0.63 -27.74 3.00 -726.33 -2.18 -29.92 16 3 C 0.27 14.04 4.91 85.63 0.42 14.46 16 4 C -0.54 -30.55 9.39 25.60 0.24 -30.31 16 5 H 0.05 2.83 7.81 -2.91 -0.02 2.81 16 6 C 0.01 0.73 5.46 84.65 0.46 1.20 16 7 N -0.93 -54.53 13.29 21.45 0.28 -54.24 16 8 Si 0.96 44.21 29.54 68.60 2.03 46.24 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 10 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 11 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 12 C 0.21 8.78 6.56 38.13 0.25 9.03 16 13 C -0.21 -6.91 9.20 22.38 0.21 -6.70 16 14 C -0.05 -1.41 9.96 22.38 0.22 -1.18 16 15 C 0.00 -0.08 4.87 38.13 0.19 0.10 16 16 N -0.48 -12.78 5.28 -682.57 -3.61 -16.39 16 17 C 0.03 0.73 6.43 86.65 0.56 1.29 16 18 C -0.12 -1.99 7.06 31.80 0.22 -1.77 16 19 C -0.13 -2.21 6.93 31.47 0.22 -1.99 16 20 C 0.03 0.71 6.49 86.45 0.56 1.27 16 21 C -0.10 -3.63 7.90 22.38 0.18 -3.45 16 22 C -0.20 -8.69 9.20 22.38 0.21 -8.49 16 23 H 0.05 1.65 8.14 -2.38 -0.02 1.63 16 24 H 0.06 2.07 8.07 -2.39 -0.02 2.05 16 25 H 0.08 2.33 6.20 -2.39 -0.01 2.31 16 26 H 0.01 0.61 8.07 -2.39 -0.02 0.59 16 27 H 0.01 0.56 6.20 -2.39 -0.01 0.54 16 28 H 0.27 14.74 8.31 -92.70 -0.77 13.97 16 29 H 0.14 4.00 6.14 -2.91 -0.02 3.98 16 30 H 0.14 3.66 8.06 -2.91 -0.02 3.63 16 31 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 32 H 0.03 0.92 7.04 -2.39 -0.02 0.90 16 33 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 34 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.04 0.95 6.29 -2.39 -0.02 0.94 16 38 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.12 3.87 7.03 -2.91 -0.02 3.85 16 40 H 0.10 4.78 6.14 -2.91 -0.02 4.76 16 Total: -1.00 -63.19 319.34 2.77 -60.42 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 1.01 Total: 15.80 kcal Atomic # 6 Polarization: -27.14 SS G_CDS: 5.23 Total: -21.90 kcal Atomic # 7 Polarization: -95.05 SS G_CDS: -5.50 Total: -100.55 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -63.19 2.77 -60.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049821484.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.856 kcal (2) G-P(sol) polarization free energy of solvation -63.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds