Wall clock time and date at job start Mon Mar 30 2020 07:07:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36832 * 119.99659 * 2 1 4 4 H 1.08004 * 119.99685 * 205.36383 * 3 2 1 5 5 C 1.38742 * 120.00093 * 25.37348 * 3 2 1 6 6 N 1.31627 * 120.00157 * 10.94612 * 5 3 2 7 7 Si 1.86805 * 119.99696 * 190.94904 * 5 3 2 8 8 H 1.48496 * 109.46906 * 84.94380 * 7 5 3 9 9 H 1.48499 * 109.46992 * 204.94339 * 7 5 3 10 10 H 1.48500 * 109.47243 * 324.94209 * 7 5 3 11 11 C 1.39399 * 119.99798 * 180.27625 * 2 1 3 12 12 C 1.39103 * 120.01200 * 179.44634 * 11 2 1 13 13 C 1.37964 * 119.98364 * 179.74420 * 12 11 2 14 14 C 1.38976 * 120.01376 * 0.53586 * 13 12 11 15 15 N 1.39781 * 119.98603 * 179.72236 * 14 13 12 16 16 C 1.46846 * 111.00495 * 124.23024 * 15 14 13 17 17 C 1.53038 * 109.52607 * 174.15777 * 16 15 14 18 18 C 1.53125 * 109.27545 * 59.18051 * 17 16 15 19 19 C 1.53121 * 109.16023 * 302.34406 * 18 17 16 20 20 C 1.46854 * 111.00137 * 0.02562 * 15 14 13 21 21 C 1.38973 * 120.02871 * 359.74124 * 14 13 12 22 22 C 1.37958 * 120.01988 * 359.97438 * 21 14 13 23 23 H 1.08998 * 109.47210 * 274.23177 * 1 2 3 24 24 H 1.08996 * 109.47158 * 34.22990 * 1 2 3 25 25 H 1.08996 * 109.46905 * 154.22965 * 1 2 3 26 26 H 0.96994 * 119.99904 * 179.97438 * 6 5 3 27 27 H 1.07993 * 120.01122 * 0.02641 * 12 11 2 28 28 H 1.08002 * 119.99407 * 180.27423 * 13 12 11 29 29 H 1.09003 * 109.45990 * 294.17787 * 16 15 14 30 30 H 1.09000 * 109.45951 * 54.14416 * 16 15 14 31 31 H 1.08998 * 109.50193 * 299.24009 * 17 16 15 32 32 H 1.09000 * 109.50279 * 179.11520 * 17 16 15 33 33 H 1.08996 * 109.51778 * 182.43607 * 18 17 16 34 34 H 1.09005 * 109.52047 * 62.24762 * 18 17 16 35 35 H 1.08993 * 109.50142 * 297.71550 * 19 18 17 36 36 H 1.08996 * 109.49969 * 177.59510 * 19 18 17 37 37 H 1.09000 * 109.45916 * 305.86066 * 20 15 14 38 38 H 1.09004 * 109.45487 * 65.82441 * 20 15 14 39 39 H 1.08002 * 119.99302 * 180.02562 * 21 14 13 40 40 H 1.08001 * 120.01422 * 180.02562 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1492 1.1850 0.0000 4 1 3.1511 1.2301 -0.4007 5 6 1.5558 2.3286 0.5149 6 7 0.4322 2.2381 1.1945 7 14 2.3515 3.9968 0.2435 8 1 1.9271 4.5394 -1.0720 9 1 1.9308 4.9271 1.3218 10 1 3.8290 3.8498 0.2650 11 6 2.1620 -1.2072 -0.0058 12 6 3.5530 -1.2076 -0.0175 13 6 4.2422 -2.4027 -0.0179 14 6 3.5470 -3.6061 -0.0179 15 7 4.2459 -4.8166 -0.0242 16 6 3.8463 -5.6610 1.1088 17 6 4.5200 -7.0299 0.9892 18 6 6.0401 -6.8458 0.9769 19 6 6.4253 -5.9237 -0.1833 20 6 5.6964 -4.5869 -0.0295 21 6 2.1573 -3.6064 -0.0121 22 6 1.4668 -2.4121 -0.0058 23 1 -0.3633 0.0758 1.0248 24 1 -0.3633 0.8496 -0.5781 25 1 -0.3633 -0.9254 -0.4468 26 1 0.0176 3.0375 1.5547 27 1 4.0933 -0.2725 -0.0216 28 1 5.3222 -2.4031 -0.0224 29 1 4.1518 -5.1861 2.0411 30 1 2.7637 -5.7874 1.1034 31 1 4.2042 -7.5113 0.0636 32 1 4.2356 -7.6509 1.8386 33 1 6.5232 -7.8144 0.8483 34 1 6.3607 -6.3999 1.9185 35 1 6.1395 -6.3877 -1.1272 36 1 7.5020 -5.7545 -0.1716 37 1 5.9575 -3.9331 -0.8616 38 1 5.9930 -4.1171 0.9083 39 1 1.6177 -4.5420 -0.0118 40 1 0.3868 -2.4125 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000049821485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:57 Heat of formation + Delta-G solvation = 42.820931 kcal Electronic energy + Delta-G solvation = -19391.321277 eV Core-core repulsion = 16591.960645 eV Total energy + Delta-G solvation = -2799.360633 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.61764 -37.84630 -35.51822 -33.00513 -31.39324 -31.13854 -29.79978 -27.42861 -26.51539 -24.43428 -23.33950 -22.74170 -20.83497 -20.19121 -19.18400 -17.27640 -17.05146 -15.76050 -14.87014 -14.68808 -14.50330 -14.16249 -13.83579 -13.57810 -13.28168 -13.23939 -13.17946 -12.65879 -12.43894 -11.88444 -11.59010 -11.49664 -11.17975 -11.13623 -10.95214 -10.80463 -10.73356 -10.69707 -10.32881 -10.32254 -10.23568 -9.61635 -9.48278 -8.84115 -7.97318 -7.93020 -6.46053 -6.11371 -3.73083 2.46228 2.59710 3.16756 3.19191 3.21673 4.07250 4.27846 4.73998 4.88121 4.92820 5.00326 5.04866 5.18708 5.33035 5.52169 5.60549 5.68703 5.75996 5.84146 5.88240 5.93278 5.95315 6.06469 6.16013 6.21240 6.29662 6.38577 6.48229 6.51907 6.70252 6.91147 7.01293 7.11681 7.17396 7.28843 7.42108 7.56979 7.69519 7.82141 7.96015 8.28191 8.69736 9.34086 9.66915 10.67603 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038319 B = 0.004383 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.537727 B = 6387.399258 C = 6900.554049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.123 3.877 2 N -0.455 5.455 3 C -0.305 4.305 4 H 0.093 0.907 5 C 0.026 3.974 6 N -0.880 5.880 7 Si 0.925 3.075 8 H -0.277 1.277 9 H -0.283 1.283 10 H -0.270 1.270 11 C 0.203 3.797 12 C -0.196 4.196 13 C -0.105 4.105 14 C -0.025 4.025 15 N -0.477 5.477 16 C 0.056 3.944 17 C -0.117 4.117 18 C -0.121 4.121 19 C -0.117 4.117 20 C 0.055 3.945 21 C -0.073 4.073 22 C -0.223 4.223 23 H 0.057 0.943 24 H 0.057 0.943 25 H 0.030 0.970 26 H 0.267 0.733 27 H 0.115 0.885 28 H 0.106 0.894 29 H 0.032 0.968 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.062 0.938 33 H 0.059 0.941 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.077 0.923 38 H 0.035 0.965 39 H 0.104 0.896 40 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.537 -12.445 -0.641 14.072 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.021 4.021 2 N -0.142 5.142 3 C -0.434 4.434 4 H 0.111 0.889 5 C -0.177 4.177 6 N -0.517 5.517 7 Si 0.752 3.248 8 H -0.203 1.203 9 H -0.209 1.209 10 H -0.195 1.195 11 C 0.086 3.914 12 C -0.221 4.221 13 C -0.126 4.126 14 C -0.123 4.123 15 N -0.195 5.195 16 C -0.071 4.071 17 C -0.155 4.155 18 C -0.159 4.159 19 C -0.155 4.155 20 C -0.073 4.073 21 C -0.093 4.093 22 C -0.247 4.247 23 H 0.076 0.924 24 H 0.076 0.924 25 H 0.048 0.952 26 H 0.077 0.923 27 H 0.133 0.867 28 H 0.124 0.876 29 H 0.051 0.949 30 H 0.093 0.907 31 H 0.087 0.913 32 H 0.081 0.919 33 H 0.078 0.922 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.081 0.919 37 H 0.095 0.905 38 H 0.053 0.947 39 H 0.122 0.878 40 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 6.100 -12.272 -0.945 13.737 hybrid contribution 0.435 1.400 0.638 1.598 sum 6.535 -10.872 -0.307 12.689 Atomic orbital electron populations 1.21421 0.80837 0.98158 1.01645 1.42491 1.04105 1.01964 1.65605 1.19528 1.01107 0.85025 1.37705 0.88936 1.25355 0.96861 1.00085 0.95416 1.70075 1.18680 1.29622 1.33294 0.85954 0.79417 0.81448 0.77969 1.20329 1.20897 1.19499 1.18014 0.91406 0.86158 0.95780 1.20354 0.92601 0.97201 1.11921 1.20815 0.98066 0.91847 1.01903 1.18193 0.92489 0.87734 1.13858 1.59400 1.04571 1.14830 1.40748 1.22204 1.00199 0.92960 0.91698 1.21614 0.95153 0.96811 1.01952 1.21580 0.96255 0.99363 0.98657 1.21613 0.99025 0.95770 0.99120 1.22128 0.87700 0.96713 1.00749 1.20170 0.91988 0.96492 1.00697 1.20304 0.98536 0.91112 1.14795 0.92440 0.92382 0.95195 0.92255 0.86683 0.87596 0.94948 0.90672 0.91285 0.91919 0.92210 0.92412 0.91268 0.91864 0.90458 0.94661 0.87836 0.87240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.90 8.54 59.85 0.51 3.41 16 2 N -0.45 -11.59 3.12 -120.47 -0.38 -11.96 16 3 C -0.31 -8.07 8.97 -15.13 -0.14 -8.21 16 4 H 0.09 2.39 6.22 -52.48 -0.33 2.06 16 5 C 0.03 0.68 5.13 -17.45 -0.09 0.60 16 6 N -0.88 -23.61 10.74 55.49 0.60 -23.02 16 7 Si 0.93 20.18 29.57 -169.99 -5.03 15.16 16 8 H -0.28 -5.99 7.11 56.52 0.40 -5.59 16 9 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 10 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 11 C 0.20 4.80 6.52 -83.78 -0.55 4.26 16 12 C -0.20 -4.39 9.26 -39.36 -0.36 -4.76 16 13 C -0.10 -2.07 8.81 -39.41 -0.35 -2.42 16 14 C -0.02 -0.46 5.65 -83.69 -0.47 -0.94 16 15 N -0.48 -7.63 4.70 -171.07 -0.80 -8.44 16 16 C 0.06 0.78 5.26 -3.83 -0.02 0.76 16 17 C -0.12 -1.31 6.09 -26.65 -0.16 -1.47 16 18 C -0.12 -1.25 6.00 -26.60 -0.16 -1.41 16 19 C -0.12 -1.31 6.09 -26.65 -0.16 -1.47 16 20 C 0.05 0.76 4.15 -3.83 -0.02 0.75 16 21 C -0.07 -1.40 9.15 -39.41 -0.36 -1.76 16 22 C -0.22 -4.73 9.21 -39.36 -0.36 -5.09 16 23 H 0.06 1.43 7.34 -51.93 -0.38 1.05 16 24 H 0.06 1.41 7.38 -51.93 -0.38 1.03 16 25 H 0.03 0.62 5.96 -51.93 -0.31 0.31 16 26 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 27 H 0.12 2.61 6.20 -52.49 -0.33 2.28 16 28 H 0.11 1.84 5.79 -52.49 -0.30 1.54 16 29 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.07 1.05 6.70 -51.93 -0.35 0.70 16 31 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 36 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 37 H 0.08 1.10 6.97 -51.93 -0.36 0.74 16 38 H 0.04 0.51 7.73 -51.93 -0.40 0.10 16 39 H 0.10 1.77 7.14 -52.49 -0.37 1.39 16 40 H 0.11 2.20 6.04 -52.49 -0.32 1.88 16 LS Contribution 307.09 15.07 4.63 4.63 Total: -1.00 -27.54 307.09 -9.60 -37.14 By element: Atomic # 1 Polarization: 10.16 SS G_CDS: -5.93 Total: 4.23 kcal Atomic # 6 Polarization: -15.05 SS G_CDS: -2.69 Total: -17.74 kcal Atomic # 7 Polarization: -42.83 SS G_CDS: -0.58 Total: -43.42 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.03 Total: 15.16 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -27.54 -9.60 -37.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049821485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.963 kcal (2) G-P(sol) polarization free energy of solvation -27.542 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.421 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds