Wall clock time and date at job start Mon Mar 30 2020 07:07:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.36832 * 119.99659 * 2 1 4 4 H 1.08004 * 119.99685 * 205.36383 * 3 2 1 5 5 C 1.38742 * 120.00093 * 25.37348 * 3 2 1 6 6 N 1.31627 * 120.00157 * 10.94612 * 5 3 2 7 7 Si 1.86805 * 119.99696 * 190.94904 * 5 3 2 8 8 H 1.48496 * 109.46906 * 84.94380 * 7 5 3 9 9 H 1.48499 * 109.46992 * 204.94339 * 7 5 3 10 10 H 1.48500 * 109.47243 * 324.94209 * 7 5 3 11 11 C 1.39399 * 119.99798 * 180.27625 * 2 1 3 12 12 C 1.39103 * 120.01200 * 179.44634 * 11 2 1 13 13 C 1.37964 * 119.98364 * 179.74420 * 12 11 2 14 14 C 1.38976 * 120.01376 * 0.53586 * 13 12 11 15 15 N 1.39781 * 119.98603 * 179.72236 * 14 13 12 16 16 C 1.46846 * 111.00495 * 124.23024 * 15 14 13 17 17 C 1.53038 * 109.52607 * 174.15777 * 16 15 14 18 18 C 1.53125 * 109.27545 * 59.18051 * 17 16 15 19 19 C 1.53121 * 109.16023 * 302.34406 * 18 17 16 20 20 C 1.46854 * 111.00137 * 0.02562 * 15 14 13 21 21 C 1.38973 * 120.02871 * 359.74124 * 14 13 12 22 22 C 1.37958 * 120.01988 * 359.97438 * 21 14 13 23 23 H 1.08998 * 109.47210 * 274.23177 * 1 2 3 24 24 H 1.08996 * 109.47158 * 34.22990 * 1 2 3 25 25 H 1.08996 * 109.46905 * 154.22965 * 1 2 3 26 26 H 0.96994 * 119.99904 * 179.97438 * 6 5 3 27 27 H 1.07993 * 120.01122 * 0.02641 * 12 11 2 28 28 H 1.08002 * 119.99407 * 180.27423 * 13 12 11 29 29 H 1.09003 * 109.45990 * 294.17787 * 16 15 14 30 30 H 1.09000 * 109.45951 * 54.14416 * 16 15 14 31 31 H 1.08998 * 109.50193 * 299.24009 * 17 16 15 32 32 H 1.09000 * 109.50279 * 179.11520 * 17 16 15 33 33 H 1.08996 * 109.51778 * 182.43607 * 18 17 16 34 34 H 1.09005 * 109.52047 * 62.24762 * 18 17 16 35 35 H 1.08993 * 109.50142 * 297.71550 * 19 18 17 36 36 H 1.08996 * 109.49969 * 177.59510 * 19 18 17 37 37 H 1.09000 * 109.45916 * 305.86066 * 20 15 14 38 38 H 1.09004 * 109.45487 * 65.82441 * 20 15 14 39 39 H 1.08002 * 119.99302 * 180.02562 * 21 14 13 40 40 H 1.08001 * 120.01422 * 180.02562 * 22 21 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1492 1.1850 0.0000 4 1 3.1511 1.2301 -0.4007 5 6 1.5558 2.3286 0.5149 6 7 0.4322 2.2381 1.1945 7 14 2.3515 3.9968 0.2435 8 1 1.9271 4.5394 -1.0720 9 1 1.9308 4.9271 1.3218 10 1 3.8290 3.8498 0.2650 11 6 2.1620 -1.2072 -0.0058 12 6 3.5530 -1.2076 -0.0175 13 6 4.2422 -2.4027 -0.0179 14 6 3.5470 -3.6061 -0.0179 15 7 4.2459 -4.8166 -0.0242 16 6 3.8463 -5.6610 1.1088 17 6 4.5200 -7.0299 0.9892 18 6 6.0401 -6.8458 0.9769 19 6 6.4253 -5.9237 -0.1833 20 6 5.6964 -4.5869 -0.0295 21 6 2.1573 -3.6064 -0.0121 22 6 1.4668 -2.4121 -0.0058 23 1 -0.3633 0.0758 1.0248 24 1 -0.3633 0.8496 -0.5781 25 1 -0.3633 -0.9254 -0.4468 26 1 0.0176 3.0375 1.5547 27 1 4.0933 -0.2725 -0.0216 28 1 5.3222 -2.4031 -0.0224 29 1 4.1518 -5.1861 2.0411 30 1 2.7637 -5.7874 1.1034 31 1 4.2042 -7.5113 0.0636 32 1 4.2356 -7.6509 1.8386 33 1 6.5232 -7.8144 0.8483 34 1 6.3607 -6.3999 1.9185 35 1 6.1395 -6.3877 -1.1272 36 1 7.5020 -5.7545 -0.1716 37 1 5.9575 -3.9331 -0.8616 38 1 5.9930 -4.1171 0.9083 39 1 1.6177 -4.5420 -0.0118 40 1 0.3868 -2.4125 -0.0008 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000049821485.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:56 Heat of formation + Delta-G solvation = 28.795933 kcal Electronic energy + Delta-G solvation = -19391.929447 eV Core-core repulsion = 16591.960645 eV Total energy + Delta-G solvation = -2799.968802 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.02054 -39.37444 -37.08670 -34.45769 -33.07913 -32.39784 -31.23966 -29.01866 -28.36098 -25.89308 -24.53959 -24.26856 -22.34812 -21.57704 -20.39631 -19.07535 -18.64195 -17.36658 -16.34338 -16.18274 -15.85699 -15.60417 -15.15503 -14.92892 -14.89152 -14.58266 -14.42797 -14.20731 -13.85562 -13.33205 -13.21568 -12.94252 -12.92172 -12.60723 -12.57763 -12.42657 -12.11430 -12.03573 -11.67095 -11.54750 -11.29614 -11.15622 -11.10779 -10.58008 -9.62791 -9.51075 -8.33005 -7.87434 -5.69844 0.77933 0.94500 1.40318 1.45372 1.51546 2.28059 2.86204 3.08102 3.26038 3.38185 3.93719 3.97623 4.11175 4.22464 4.26534 4.34994 4.48696 4.54549 4.63329 4.71193 4.74141 4.82461 4.90793 4.95337 4.97911 5.04643 5.09709 5.17102 5.25915 5.29073 5.35794 5.38516 5.43811 5.50370 5.56433 5.66571 5.86086 6.02996 6.14688 6.40556 6.70273 6.80947 7.49150 7.79426 8.76832 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.038319 B = 0.004383 C = 0.004057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 730.537727 B = 6387.399258 C = 6900.554049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.140 3.860 2 N -0.486 5.486 3 C -0.324 4.324 4 H 0.088 0.912 5 C -0.021 4.021 6 N -0.912 5.912 7 Si 0.990 3.010 8 H -0.273 1.273 9 H -0.282 1.282 10 H -0.265 1.265 11 C 0.176 3.824 12 C -0.211 4.211 13 C -0.110 4.110 14 C -0.004 4.004 15 N -0.483 5.483 16 C 0.053 3.947 17 C -0.112 4.112 18 C -0.120 4.120 19 C -0.112 4.112 20 C 0.049 3.951 21 C -0.076 4.076 22 C -0.222 4.222 23 H 0.035 0.965 24 H 0.039 0.961 25 H 0.054 0.946 26 H 0.266 0.734 27 H 0.103 0.897 28 H 0.128 0.872 29 H 0.024 0.976 30 H 0.075 0.925 31 H 0.070 0.930 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.057 0.943 35 H 0.069 0.931 36 H 0.082 0.918 37 H 0.072 0.928 38 H 0.032 0.968 39 H 0.131 0.869 40 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.147 -14.922 -0.810 17.020 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 N -0.178 5.178 3 C -0.452 4.452 4 H 0.105 0.895 5 C -0.220 4.220 6 N -0.551 5.551 7 Si 0.814 3.186 8 H -0.198 1.198 9 H -0.207 1.207 10 H -0.189 1.189 11 C 0.063 3.937 12 C -0.236 4.236 13 C -0.131 4.131 14 C -0.102 4.102 15 N -0.201 5.201 16 C -0.073 4.073 17 C -0.150 4.150 18 C -0.158 4.158 19 C -0.150 4.150 20 C -0.078 4.078 21 C -0.097 4.097 22 C -0.247 4.247 23 H 0.053 0.947 24 H 0.058 0.942 25 H 0.073 0.927 26 H 0.076 0.924 27 H 0.121 0.879 28 H 0.146 0.854 29 H 0.042 0.958 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.076 0.924 35 H 0.087 0.913 36 H 0.101 0.899 37 H 0.090 0.910 38 H 0.050 0.950 39 H 0.149 0.851 40 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 7.749 -14.820 -1.122 16.761 hybrid contribution 0.069 1.836 0.672 1.956 sum 7.818 -12.984 -0.450 15.163 Atomic orbital electron populations 1.21175 0.80593 0.98513 1.00104 1.42554 1.04391 1.02201 1.68635 1.19718 1.01307 0.86146 1.38039 0.89478 1.26152 0.97497 1.03170 0.95202 1.70197 1.20015 1.30201 1.34709 0.84980 0.78643 0.77196 0.77811 1.19821 1.20743 1.18941 1.18413 0.92142 0.86556 0.96568 1.20445 0.92487 0.97849 1.12808 1.21052 0.99296 0.91268 1.01453 1.18513 0.92760 0.88789 1.10169 1.59386 1.05725 1.13183 1.41781 1.22299 1.00646 0.94079 0.90286 1.21606 0.95503 0.94950 1.02933 1.21603 0.95723 1.00271 0.98189 1.21602 0.99774 0.94089 0.99541 1.22252 0.86502 0.98685 1.00354 1.20470 0.92411 0.96866 0.99935 1.20519 0.99197 0.90993 1.13983 0.94660 0.94186 0.92743 0.92434 0.87929 0.85382 0.95760 0.90696 0.91110 0.89975 0.90011 0.92428 0.91268 0.89949 0.90959 0.95006 0.85112 0.86357 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.85 8.54 127.77 1.09 7.94 16 2 N -0.49 -25.65 3.12 -535.07 -1.67 -27.32 16 3 C -0.32 -17.77 8.97 84.03 0.75 -17.01 16 4 H 0.09 4.69 6.22 -2.91 -0.02 4.67 16 5 C -0.02 -1.10 5.13 84.84 0.44 -0.66 16 6 N -0.91 -50.83 10.74 21.64 0.23 -50.60 16 7 Si 0.99 42.45 29.57 68.60 2.03 44.48 16 8 H -0.27 -11.36 7.11 99.48 0.71 -10.66 16 9 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 10 H -0.27 -10.98 7.11 99.48 0.71 -10.27 16 11 C 0.18 8.46 6.52 38.35 0.25 8.71 16 12 C -0.21 -9.59 9.26 22.41 0.21 -9.38 16 13 C -0.11 -4.21 8.81 22.38 0.20 -4.01 16 14 C 0.00 -0.13 5.65 38.23 0.22 0.09 16 15 N -0.48 -14.12 4.70 -695.14 -3.27 -17.39 16 16 C 0.05 1.33 5.26 86.33 0.45 1.78 16 17 C -0.11 -2.06 6.09 30.65 0.19 -1.88 16 18 C -0.12 -2.00 6.00 30.68 0.18 -1.81 16 19 C -0.11 -2.09 6.09 30.65 0.19 -1.91 16 20 C 0.05 1.24 4.15 86.32 0.36 1.60 16 21 C -0.08 -2.79 9.15 22.38 0.20 -2.58 16 22 C -0.22 -9.32 9.21 22.41 0.21 -9.11 16 23 H 0.03 1.83 7.34 -2.39 -0.02 1.82 16 24 H 0.04 2.03 7.38 -2.39 -0.02 2.02 16 25 H 0.05 2.29 5.96 -2.39 -0.01 2.28 16 26 H 0.27 14.07 8.31 -92.71 -0.77 13.30 16 27 H 0.10 4.83 6.20 -2.91 -0.02 4.81 16 28 H 0.13 4.28 5.79 -2.91 -0.02 4.26 16 29 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 30 H 0.07 1.87 6.70 -2.39 -0.02 1.85 16 31 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.08 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 34 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 36 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 37 H 0.07 1.88 6.97 -2.39 -0.02 1.86 16 38 H 0.03 0.83 7.73 -2.39 -0.02 0.81 16 39 H 0.13 4.06 7.14 -2.91 -0.02 4.04 16 40 H 0.12 4.67 6.04 -2.91 -0.02 4.65 16 Total: -1.00 -60.43 307.09 3.27 -57.15 By element: Atomic # 1 Polarization: 20.90 SS G_CDS: 1.02 Total: 21.92 kcal Atomic # 6 Polarization: -33.18 SS G_CDS: 4.93 Total: -28.25 kcal Atomic # 7 Polarization: -90.60 SS G_CDS: -4.71 Total: -95.31 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -60.43 3.27 -57.15 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000049821485.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.951 kcal (2) G-P(sol) polarization free energy of solvation -60.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.274 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.155 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds