Wall clock time and date at job start Mon Mar 30 2020 07:32:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 119.99819 * 2 1 4 4 H 1.48500 * 109.47254 * 239.99764 * 3 2 1 5 5 H 1.48495 * 109.47558 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46814 * 120.00625 * 3 2 1 7 7 C 1.37877 * 120.00069 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00146 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99838 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.47110 * 180.02562 * 9 7 2 11 11 N 1.46506 * 109.46992 * 179.97438 * 10 9 7 12 12 C 1.35875 * 119.62054 * 90.00111 * 11 10 9 13 13 C 1.35404 * 120.69915 * 180.02562 * 12 11 10 14 14 Cl 1.73594 * 120.02870 * 179.97438 * 13 12 11 15 15 C 1.40288 * 119.94198 * 359.97438 * 13 12 11 16 16 C 1.36445 * 119.26560 * 359.97438 * 15 13 12 17 17 Cl 1.73594 * 120.34984 * 180.02562 * 16 15 13 18 18 C 1.34658 * 119.62293 * 269.72248 * 11 10 9 19 19 O 1.22077 * 119.98322 * 359.97438 * 18 11 10 20 20 H 0.97000 * 119.99667 * 359.97438 * 1 2 3 21 21 H 1.09000 * 109.47543 * 59.99886 * 9 7 2 22 22 H 1.09008 * 109.47338 * 300.00399 * 9 7 2 23 23 H 1.09000 * 109.46884 * 60.00335 * 10 9 7 24 24 H 1.09000 * 109.46955 * 299.99651 * 10 9 7 25 25 H 1.07996 * 119.65147 * 0.02562 * 12 11 10 26 26 H 1.08002 * 120.36463 * 179.97438 * 15 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2842 2.7465 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2511 -2.4991 -0.0005 10 6 2.2453 -3.6620 -0.0005 11 7 1.5127 -4.9308 0.0001 12 6 1.1765 -5.5127 -1.1808 13 6 0.4991 -6.6849 -1.2057 14 17 0.0779 -7.4127 -2.7244 15 6 0.1380 -7.3106 -0.0032 16 6 0.4775 -6.7251 1.1816 17 17 0.0454 -7.4752 2.6863 18 6 1.1852 -5.5097 1.1709 19 8 1.4992 -4.9773 2.2237 20 1 -0.4849 0.8401 0.0004 21 1 0.6240 -2.5567 -0.8903 22 1 0.6246 -2.5570 0.8897 23 1 2.8719 -3.6043 0.8895 24 1 2.8719 -3.6043 -0.8906 25 1 1.4525 -5.0353 -2.1094 26 1 -0.4027 -8.2454 -0.0151 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057839551.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:32:34 Heat of formation + Delta-G solvation = -41.735893 kcal Electronic energy + Delta-G solvation = -14857.872007 eV Core-core repulsion = 11987.903085 eV Total energy + Delta-G solvation = -2869.968922 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 261.006 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -42.54732 -38.49275 -37.90722 -37.39976 -36.16810 -34.76775 -31.86516 -30.72516 -27.45677 -25.24286 -24.43696 -22.81812 -19.13837 -19.04261 -18.29360 -17.65828 -17.10607 -16.45295 -16.04346 -15.86240 -14.99918 -14.48475 -14.23392 -14.06529 -13.88099 -13.79451 -13.22941 -12.84977 -12.80120 -12.31029 -12.27529 -12.07394 -11.93849 -11.61168 -11.54378 -11.16658 -10.77388 -10.61018 -9.01588 -8.25432 -6.38248 -0.51090 0.45647 0.54645 1.23177 1.41657 1.44995 1.52349 1.75924 2.25526 2.40083 3.09840 3.38205 3.56920 3.67789 4.08017 4.27682 4.39197 4.43261 4.67509 4.70154 5.08751 5.34879 5.40159 5.72337 5.80927 6.07206 6.69829 6.77981 7.32236 8.86604 Molecular weight = 261.01amu Principal moments of inertia in cm(-1) A = 0.021830 B = 0.005640 C = 0.004751 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1282.319890 B = 4963.457812 C = 5891.975342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.932 5.932 2 C 0.004 3.996 3 Si 0.969 3.031 4 H -0.257 1.257 5 H -0.286 1.286 6 H -0.271 1.271 7 C -0.543 4.543 8 H 0.073 0.927 9 C 0.022 3.978 10 C 0.106 3.894 11 N -0.477 5.477 12 C 0.172 3.828 13 C -0.154 4.154 14 Cl -0.021 7.021 15 C 0.029 3.971 16 C -0.185 4.185 17 Cl -0.031 7.031 18 C 0.502 3.498 19 O -0.570 6.570 20 H 0.265 0.735 21 H 0.012 0.988 22 H -0.022 1.022 23 H 0.081 0.919 24 H 0.127 0.873 25 H 0.206 0.794 26 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.417 -16.258 -6.463 17.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.571 5.571 2 C -0.195 4.195 3 Si 0.793 3.207 4 H -0.182 1.182 5 H -0.212 1.212 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.092 0.908 9 C -0.015 4.015 10 C -0.014 4.014 11 N -0.185 5.185 12 C 0.041 3.959 13 C -0.186 4.186 14 Cl 0.007 6.993 15 C 0.006 3.994 16 C -0.216 4.216 17 Cl -0.002 7.002 18 C 0.303 3.697 19 O -0.454 6.454 20 H 0.074 0.926 21 H 0.030 0.970 22 H -0.003 1.003 23 H 0.099 0.901 24 H 0.144 0.856 25 H 0.223 0.777 26 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges 1.437 -15.883 -5.763 16.957 hybrid contribution -0.114 0.894 0.365 0.972 sum 1.323 -14.988 -5.398 15.985 Atomic orbital electron populations 1.70098 1.07998 1.28098 1.50901 1.25968 0.95692 1.03523 0.94318 0.85442 0.78186 0.77705 0.79387 1.18151 1.21203 1.19662 1.21422 0.93965 0.91158 1.51625 0.90847 1.19220 0.94319 0.92526 0.95478 1.22338 0.94971 0.78854 1.05190 1.45773 1.45260 1.21456 1.05969 1.22478 0.90836 0.91541 0.91017 1.19627 1.11816 0.98104 0.89064 1.98380 1.92332 1.81780 1.26770 1.21472 0.91233 0.98966 0.87719 1.21299 1.12213 0.98040 0.90014 1.98338 1.91434 1.79491 1.30967 1.17076 0.82357 0.86482 0.83766 1.90993 1.57327 1.66297 1.30769 0.92648 0.96995 1.00321 0.90080 0.85552 0.77718 0.79986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.65 13.29 21.45 0.28 -55.36 15 2 C 0.00 0.20 5.46 84.65 0.46 0.67 15 3 Si 0.97 42.78 29.54 68.60 2.03 44.81 15 4 H -0.26 -10.55 7.11 99.48 0.71 -9.84 15 5 H -0.29 -12.56 7.11 99.48 0.71 -11.86 15 6 H -0.27 -11.76 7.11 99.48 0.71 -11.05 15 7 C -0.54 -29.21 9.11 25.60 0.23 -28.98 15 8 H 0.07 3.65 7.74 -2.91 -0.02 3.63 15 9 C 0.02 1.11 5.30 29.85 0.16 1.27 15 10 C 0.11 4.00 5.28 86.38 0.46 4.46 15 11 N -0.48 -16.01 2.59 -650.69 -1.68 -17.69 15 12 C 0.17 4.19 10.04 83.41 0.84 5.02 15 13 C -0.15 -3.29 6.29 22.11 0.14 -3.15 15 14 Cl -0.02 -0.36 28.95 -2.72 -0.08 -0.44 15 15 C 0.03 0.65 9.68 22.35 0.22 0.86 15 16 C -0.18 -5.63 6.34 22.44 0.14 -5.49 15 17 Cl -0.03 -0.91 28.55 -2.72 -0.08 -0.99 15 18 C 0.50 19.18 7.41 84.85 0.63 19.81 15 19 O -0.57 -27.01 16.13 -5.57 -0.09 -27.10 15 20 H 0.26 14.95 8.31 -92.71 -0.77 14.18 15 21 H 0.01 0.60 8.14 -2.39 -0.02 0.58 15 22 H -0.02 -1.29 8.14 -2.38 -0.02 -1.31 15 23 H 0.08 3.34 7.38 -2.39 -0.02 3.32 15 24 H 0.13 3.73 8.01 -2.39 -0.02 3.71 15 25 H 0.21 3.64 8.04 -2.91 -0.02 3.62 15 26 H 0.18 2.82 8.06 -2.91 -0.02 2.80 15 Total: -1.00 -69.38 269.09 4.86 -64.52 By element: Atomic # 1 Polarization: -3.42 SS G_CDS: 1.21 Total: -2.21 kcal Atomic # 6 Polarization: -8.80 SS G_CDS: 3.27 Total: -5.53 kcal Atomic # 7 Polarization: -71.66 SS G_CDS: -1.40 Total: -73.06 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.09 Total: -27.10 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 2.03 Total: 44.81 kcal Atomic # 17 Polarization: -1.27 SS G_CDS: -0.16 Total: -1.43 kcal Total: -69.38 4.86 -64.52 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057839551.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.784 kcal (2) G-P(sol) polarization free energy of solvation -69.380 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.860 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds