Wall clock time and date at job start Mon Mar 30 2020 06:44:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46899 * 2 1 4 4 C 1.50702 * 109.46984 * 119.99368 * 2 1 3 5 5 H 1.08005 * 119.99457 * 95.01224 * 4 2 1 6 6 C 1.37875 * 120.00196 * 275.01035 * 4 2 1 7 7 N 1.31513 * 120.00020 * 6.95256 * 6 4 2 8 8 Si 1.86806 * 119.99895 * 186.95471 * 6 4 2 9 9 H 1.48500 * 109.46982 * 270.00180 * 8 6 4 10 10 H 1.48499 * 109.46902 * 29.99692 * 8 6 4 11 11 H 1.48499 * 109.47295 * 149.99953 * 8 6 4 12 12 N 1.46894 * 109.47388 * 239.99904 * 2 1 3 13 13 C 1.47903 * 111.00179 * 301.79169 * 12 2 1 14 14 C 1.53990 * 107.05949 * 214.15618 * 13 12 2 15 15 C 1.54599 * 105.13898 * 1.22741 * 14 13 12 16 16 H 1.09004 * 110.72219 * 263.41593 * 15 14 13 17 17 N 1.46503 * 110.72095 * 140.31586 * 15 14 13 18 18 C 1.39673 * 120.00243 * 86.45600 * 17 15 14 19 19 C 1.38915 * 120.07264 * 359.71768 * 18 17 15 20 20 C 1.38106 * 119.92471 * 179.77163 * 19 18 17 21 21 C 1.38289 * 120.07153 * 0.51315 * 20 19 18 22 22 C 1.38281 * 120.15247 * 359.73900 * 21 20 19 23 23 C 1.38107 * 120.07293 * 0.02562 * 22 21 20 24 24 C 1.48535 * 110.99699 * 184.39602 * 12 2 1 25 25 H 1.09009 * 109.46734 * 177.48658 * 1 2 3 26 26 H 1.08999 * 109.47760 * 297.48783 * 1 2 3 27 27 H 1.08998 * 109.47133 * 57.49378 * 1 2 3 28 28 H 0.96998 * 119.99733 * 355.17041 * 7 6 4 29 29 H 1.09003 * 109.91547 * 333.51616 * 13 12 2 30 30 H 1.09000 * 109.91001 * 94.80089 * 13 12 2 31 31 H 1.09003 * 110.30603 * 120.14289 * 14 13 12 32 32 H 1.08996 * 110.31142 * 242.21304 * 14 13 12 33 33 H 0.96996 * 120.00150 * 266.44686 * 17 15 14 34 34 H 1.08004 * 120.03813 * 0.02562 * 19 18 17 35 35 H 1.07993 * 119.96288 * 180.25021 * 20 19 18 36 36 H 1.07998 * 119.92173 * 179.76774 * 21 20 19 37 37 H 1.07995 * 119.96571 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.03486 * 179.97438 * 23 22 21 39 39 H 1.08995 * 110.67226 * 278.15060 * 24 12 2 40 40 H 1.09004 * 110.66838 * 41.29085 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.2893 -1.7582 1.1820 6 6 2.1638 -0.0224 2.4182 7 7 1.7241 1.2133 2.5146 8 14 2.9665 -0.8457 3.8905 9 1 1.9298 -1.5408 4.6950 10 1 3.9711 -1.8325 3.4189 11 1 3.6366 0.1815 4.7277 12 7 2.0197 -0.6925 -1.1994 13 6 1.5106 -2.0800 -1.2553 14 6 2.6134 -2.9402 -1.8996 15 6 3.7801 -1.9631 -2.1721 16 1 3.7533 -1.6082 -3.2024 17 7 5.0673 -2.5978 -1.8778 18 6 5.7107 -3.3588 -2.8565 19 6 5.1287 -3.5196 -4.1076 20 6 5.7699 -4.2687 -5.0746 21 6 6.9848 -4.8671 -4.7950 22 6 7.5645 -4.7134 -3.5490 23 6 6.9310 -3.9616 -2.5790 24 6 3.5007 -0.8049 -1.1816 25 1 -0.3633 -1.0268 -0.0451 26 1 -0.3634 0.4743 0.9116 27 1 -0.3633 0.5522 -0.8666 28 1 1.3713 1.6649 1.7320 29 1 1.3002 -2.4392 -0.2480 30 1 0.6064 -2.1194 -1.8628 31 1 2.9301 -3.7255 -1.2132 32 1 2.2568 -3.3756 -2.8330 33 1 5.4728 -2.4896 -1.0034 34 1 4.1779 -3.0559 -4.3251 35 1 5.3199 -4.3907 -6.0487 36 1 7.4823 -5.4555 -5.5518 37 1 8.5136 -5.1818 -3.3341 38 1 7.3841 -3.8423 -1.6059 39 1 3.9610 0.1193 -1.5308 40 1 3.8552 -1.0591 -0.1826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000057928208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:39 Heat of formation + Delta-G solvation = 28.157389 kcal Electronic energy + Delta-G solvation = -19477.275223 eV Core-core repulsion = 16677.278731 eV Total energy + Delta-G solvation = -2799.996491 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 2.76 seconds Orbital eigenvalues (eV) -39.53994 -38.32155 -35.34894 -33.30401 -31.06140 -30.63294 -28.99398 -28.30730 -26.26617 -24.76556 -22.84039 -21.86422 -21.73282 -20.11700 -19.36832 -17.48135 -16.81689 -16.08953 -15.80882 -14.97437 -14.59978 -13.91316 -13.82335 -13.67816 -13.37939 -13.26925 -12.97798 -12.73761 -12.52022 -11.73754 -11.57728 -11.33985 -11.22988 -11.03658 -10.86634 -10.77963 -10.69535 -10.50077 -10.22096 -10.07321 -9.88423 -9.80557 -9.08467 -8.84769 -8.43598 -7.27021 -7.24270 -6.44883 -4.19941 1.52046 1.72927 3.34668 3.36598 3.52189 3.57402 4.00044 4.42470 4.93957 5.01119 5.05853 5.11120 5.25597 5.28741 5.30108 5.49235 5.53983 5.65787 5.77069 5.89412 5.97463 6.11047 6.21308 6.39636 6.42665 6.43658 6.53870 6.57840 6.66105 6.68514 6.70894 6.71171 6.77934 6.99673 7.19450 7.25718 7.54434 7.75711 7.90558 7.95958 8.14042 8.42894 8.72971 9.53617 10.91302 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026291 B = 0.004981 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.762816 B = 5620.436429 C = 6365.790798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.180 3.820 3 H 0.042 0.958 4 C -0.622 4.622 5 H 0.052 0.948 6 C 0.027 3.973 7 N -0.906 5.906 8 Si 1.064 2.936 9 H -0.288 1.288 10 H -0.290 1.290 11 H -0.284 1.284 12 N -0.512 5.512 13 C 0.039 3.961 14 C -0.141 4.141 15 C 0.145 3.855 16 H 0.084 0.916 17 N -0.734 5.734 18 C 0.226 3.774 19 C -0.200 4.200 20 C -0.073 4.073 21 C -0.192 4.192 22 C -0.074 4.074 23 C -0.203 4.203 24 C 0.039 3.961 25 H 0.037 0.963 26 H 0.050 0.950 27 H 0.024 0.976 28 H 0.272 0.728 29 H 0.060 0.940 30 H 0.060 0.940 31 H 0.065 0.935 32 H 0.061 0.939 33 H 0.400 0.600 34 H 0.121 0.879 35 H 0.116 0.884 36 H 0.113 0.887 37 H 0.116 0.884 38 H 0.117 0.883 39 H 0.068 0.932 40 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.382 -9.429 -11.149 16.362 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.073 3.927 3 H 0.060 0.940 4 C -0.661 4.661 5 H 0.070 0.930 6 C -0.179 4.179 7 N -0.542 5.542 8 Si 0.893 3.107 9 H -0.215 1.215 10 H -0.216 1.216 11 H -0.209 1.209 12 N -0.236 5.236 13 C -0.090 4.090 14 C -0.181 4.181 15 C 0.039 3.961 16 H 0.102 0.898 17 N -0.362 5.362 18 C 0.121 3.879 19 C -0.223 4.223 20 C -0.092 4.092 21 C -0.212 4.212 22 C -0.092 4.092 23 C -0.226 4.226 24 C -0.090 4.090 25 H 0.056 0.944 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.078 0.922 31 H 0.083 0.917 32 H 0.080 0.920 33 H 0.235 0.765 34 H 0.139 0.861 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.134 0.866 38 H 0.135 0.865 39 H 0.087 0.913 40 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 7.361 -8.774 -10.036 15.228 hybrid contribution -0.072 -0.698 -0.443 0.830 sum 7.289 -9.473 -10.479 15.896 Atomic orbital electron populations 1.21866 0.98428 0.99529 0.98991 1.19561 0.91644 0.95068 0.86458 0.94049 1.22386 1.48718 0.97960 0.97037 0.92977 1.25714 0.95049 0.96198 1.00936 1.70762 1.37841 1.12776 1.32780 0.83608 0.76410 0.75186 0.75516 1.21473 1.21629 1.20913 1.65158 1.04498 1.13480 1.40439 1.22710 0.96515 0.89600 1.00128 1.22869 0.96309 0.98383 1.00510 1.21901 0.81707 0.92791 0.99712 0.89832 1.44898 1.22357 1.54651 1.14249 1.17906 0.91081 0.89838 0.89027 1.20714 1.02309 1.06104 0.93145 1.20866 0.94676 0.95475 0.98195 1.20813 0.97633 1.05224 0.97521 1.20814 0.98673 0.96691 0.93054 1.20597 0.96441 1.04903 1.00666 1.23211 0.91247 0.96102 0.98414 0.94385 0.93103 0.95720 0.91619 0.92130 0.92181 0.91673 0.92035 0.76484 0.86124 0.86598 0.86938 0.86613 0.86496 0.91337 0.91060 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 8.97 37.16 0.33 -2.61 16 2 C 0.18 4.32 2.12 -68.87 -0.15 4.17 16 3 H 0.04 1.10 7.01 -51.93 -0.36 0.73 16 4 C -0.62 -16.14 5.97 -34.44 -0.21 -16.35 16 5 H 0.05 1.37 6.32 -52.48 -0.33 1.04 16 6 C 0.03 0.73 5.45 -17.82 -0.10 0.64 16 7 N -0.91 -26.14 13.59 55.43 0.75 -25.39 16 8 Si 1.06 24.30 29.91 -169.99 -5.08 19.21 16 9 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 10 H -0.29 -6.31 7.11 56.52 0.40 -5.91 16 11 H -0.28 -6.51 7.11 56.52 0.40 -6.11 16 12 N -0.51 -10.59 5.34 -223.89 -1.20 -11.79 16 13 C 0.04 0.74 5.01 -2.76 -0.01 0.72 16 14 C -0.14 -2.26 6.67 -25.37 -0.17 -2.43 16 15 C 0.14 2.27 2.98 -66.07 -0.20 2.08 16 16 H 0.08 1.28 6.67 -51.93 -0.35 0.93 16 17 N -0.73 -10.57 5.32 -50.37 -0.27 -10.84 16 18 C 0.23 3.14 6.65 -83.79 -0.56 2.58 16 19 C -0.20 -2.65 9.22 -39.38 -0.36 -3.02 16 20 C -0.07 -0.86 10.04 -39.61 -0.40 -1.26 16 21 C -0.19 -2.16 10.04 -39.55 -0.40 -2.55 16 22 C -0.07 -0.84 10.04 -39.61 -0.40 -1.24 16 23 C -0.20 -2.58 9.90 -39.38 -0.39 -2.97 16 24 C 0.04 0.74 5.98 -1.90 -0.01 0.73 16 25 H 0.04 0.82 6.86 -51.92 -0.36 0.47 16 26 H 0.05 1.23 7.67 -51.93 -0.40 0.83 16 27 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 28 H 0.27 7.83 6.29 -40.82 -0.26 7.57 16 29 H 0.06 1.28 5.72 -51.93 -0.30 0.99 16 30 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 31 H 0.06 1.07 8.05 -51.93 -0.42 0.66 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.40 5.60 8.54 -40.82 -0.35 5.25 16 34 H 0.12 1.57 6.31 -52.48 -0.33 1.24 16 35 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 36 H 0.11 1.02 8.06 -52.49 -0.42 0.60 16 37 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 38 H 0.12 1.34 8.06 -52.48 -0.42 0.91 16 39 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 40 H 0.07 1.51 6.31 -51.93 -0.33 1.18 16 LS Contribution 315.04 15.07 4.75 4.75 Total: -1.00 -27.85 315.04 -10.01 -37.86 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -5.95 Total: 7.70 kcal Atomic # 6 Polarization: -18.50 SS G_CDS: -3.01 Total: -21.51 kcal Atomic # 7 Polarization: -47.31 SS G_CDS: -0.71 Total: -48.02 kcal Atomic # 14 Polarization: 24.30 SS G_CDS: -5.08 Total: 19.21 kcal Total LS contribution 4.75 Total: 4.75 kcal Total: -27.85 -10.01 -37.86 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057928208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.019 kcal (2) G-P(sol) polarization free energy of solvation -27.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.862 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.76 seconds