Wall clock time and date at job start Mon Mar 30 2020 06:44:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.46899 * 2 1 4 4 C 1.50702 * 109.46984 * 119.99368 * 2 1 3 5 5 H 1.08005 * 119.99457 * 95.01224 * 4 2 1 6 6 C 1.37875 * 120.00196 * 275.01035 * 4 2 1 7 7 N 1.31513 * 120.00020 * 6.95256 * 6 4 2 8 8 Si 1.86806 * 119.99895 * 186.95471 * 6 4 2 9 9 H 1.48500 * 109.46982 * 270.00180 * 8 6 4 10 10 H 1.48499 * 109.46902 * 29.99692 * 8 6 4 11 11 H 1.48499 * 109.47295 * 149.99953 * 8 6 4 12 12 N 1.46894 * 109.47388 * 239.99904 * 2 1 3 13 13 C 1.47903 * 111.00179 * 301.79169 * 12 2 1 14 14 C 1.53990 * 107.05949 * 214.15618 * 13 12 2 15 15 C 1.54599 * 105.13898 * 1.22741 * 14 13 12 16 16 H 1.09004 * 110.72219 * 263.41593 * 15 14 13 17 17 N 1.46503 * 110.72095 * 140.31586 * 15 14 13 18 18 C 1.39673 * 120.00243 * 86.45600 * 17 15 14 19 19 C 1.38915 * 120.07264 * 359.71768 * 18 17 15 20 20 C 1.38106 * 119.92471 * 179.77163 * 19 18 17 21 21 C 1.38289 * 120.07153 * 0.51315 * 20 19 18 22 22 C 1.38281 * 120.15247 * 359.73900 * 21 20 19 23 23 C 1.38107 * 120.07293 * 0.02562 * 22 21 20 24 24 C 1.48535 * 110.99699 * 184.39602 * 12 2 1 25 25 H 1.09009 * 109.46734 * 177.48658 * 1 2 3 26 26 H 1.08999 * 109.47760 * 297.48783 * 1 2 3 27 27 H 1.08998 * 109.47133 * 57.49378 * 1 2 3 28 28 H 0.96998 * 119.99733 * 355.17041 * 7 6 4 29 29 H 1.09003 * 109.91547 * 333.51616 * 13 12 2 30 30 H 1.09000 * 109.91001 * 94.80089 * 13 12 2 31 31 H 1.09003 * 110.30603 * 120.14289 * 14 13 12 32 32 H 1.08996 * 110.31142 * 242.21304 * 14 13 12 33 33 H 0.96996 * 120.00150 * 266.44686 * 17 15 14 34 34 H 1.08004 * 120.03813 * 0.02562 * 19 18 17 35 35 H 1.07993 * 119.96288 * 180.25021 * 20 19 18 36 36 H 1.07998 * 119.92173 * 179.76774 * 21 20 19 37 37 H 1.07995 * 119.96571 * 180.02562 * 22 21 20 38 38 H 1.08003 * 120.03486 * 179.97438 * 23 22 21 39 39 H 1.08995 * 110.67226 * 278.15060 * 24 12 2 40 40 H 1.09004 * 110.66838 * 41.29085 * 24 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.2893 -1.7582 1.1820 6 6 2.1638 -0.0224 2.4182 7 7 1.7241 1.2133 2.5146 8 14 2.9665 -0.8457 3.8905 9 1 1.9298 -1.5408 4.6950 10 1 3.9711 -1.8325 3.4189 11 1 3.6366 0.1815 4.7277 12 7 2.0197 -0.6925 -1.1994 13 6 1.5106 -2.0800 -1.2553 14 6 2.6134 -2.9402 -1.8996 15 6 3.7801 -1.9631 -2.1721 16 1 3.7533 -1.6082 -3.2024 17 7 5.0673 -2.5978 -1.8778 18 6 5.7107 -3.3588 -2.8565 19 6 5.1287 -3.5196 -4.1076 20 6 5.7699 -4.2687 -5.0746 21 6 6.9848 -4.8671 -4.7950 22 6 7.5645 -4.7134 -3.5490 23 6 6.9310 -3.9616 -2.5790 24 6 3.5007 -0.8049 -1.1816 25 1 -0.3633 -1.0268 -0.0451 26 1 -0.3634 0.4743 0.9116 27 1 -0.3633 0.5522 -0.8666 28 1 1.3713 1.6649 1.7320 29 1 1.3002 -2.4392 -0.2480 30 1 0.6064 -2.1194 -1.8628 31 1 2.9301 -3.7255 -1.2132 32 1 2.2568 -3.3756 -2.8330 33 1 5.4728 -2.4896 -1.0034 34 1 4.1779 -3.0559 -4.3251 35 1 5.3199 -4.3907 -6.0487 36 1 7.4823 -5.4555 -5.5518 37 1 8.5136 -5.1818 -3.3341 38 1 7.3841 -3.8423 -1.6059 39 1 3.9610 0.1193 -1.5308 40 1 3.8552 -1.0591 -0.1826 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000057928208.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:44:33 Heat of formation + Delta-G solvation = 11.664321 kcal Electronic energy + Delta-G solvation = -19477.990416 eV Core-core repulsion = 16677.278731 eV Total energy + Delta-G solvation = -2800.711685 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 4.83 seconds Orbital eigenvalues (eV) -40.73531 -39.64549 -36.76506 -34.95990 -32.63501 -31.65992 -30.27195 -29.83027 -27.61102 -26.83647 -24.03800 -23.36107 -22.75046 -21.59768 -20.92601 -18.74089 -18.50425 -17.45146 -16.87615 -16.38494 -16.00373 -15.69649 -15.17910 -14.95797 -14.61892 -14.34765 -14.25394 -14.15129 -14.05394 -13.35230 -13.13029 -12.92335 -12.73325 -12.63256 -12.39365 -12.13832 -12.09853 -12.01154 -11.78876 -11.74959 -11.48641 -11.07291 -10.88749 -10.50404 -9.75985 -9.06813 -8.57381 -8.29138 -6.34524 0.60597 0.79454 1.48559 1.55134 1.72011 2.41924 2.52112 3.07017 3.15653 3.50038 3.65498 3.88639 4.02511 4.15878 4.22567 4.41443 4.46543 4.51724 4.52958 4.69487 4.74823 4.77903 4.83005 4.84879 4.89012 4.97570 5.06631 5.12569 5.21191 5.22555 5.30707 5.39212 5.48819 5.68044 5.81076 5.86134 6.01207 6.06500 6.26269 6.45472 6.50950 6.57981 6.82503 7.45839 8.76091 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.026291 B = 0.004981 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1064.762816 B = 5620.436429 C = 6365.790798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C 0.181 3.819 3 H 0.010 0.990 4 C -0.615 4.615 5 H 0.047 0.953 6 C -0.023 4.023 7 N -0.935 5.935 8 Si 1.107 2.893 9 H -0.278 1.278 10 H -0.273 1.273 11 H -0.286 1.286 12 N -0.513 5.513 13 C 0.040 3.960 14 C -0.131 4.131 15 C 0.164 3.836 16 H 0.093 0.907 17 N -0.738 5.738 18 C 0.206 3.794 19 C -0.214 4.214 20 C -0.079 4.079 21 C -0.191 4.191 22 C -0.078 4.078 23 C -0.214 4.214 24 C 0.039 3.961 25 H 0.045 0.955 26 H 0.028 0.972 27 H 0.041 0.959 28 H 0.260 0.740 29 H 0.034 0.966 30 H 0.073 0.927 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.399 0.601 34 H 0.121 0.879 35 H 0.138 0.862 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.123 0.877 39 H 0.065 0.935 40 H 0.047 0.953 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.447 -11.489 -12.675 19.079 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.073 3.927 3 H 0.028 0.972 4 C -0.654 4.654 5 H 0.066 0.934 6 C -0.222 4.222 7 N -0.572 5.572 8 Si 0.930 3.070 9 H -0.204 1.204 10 H -0.199 1.199 11 H -0.211 1.211 12 N -0.236 5.236 13 C -0.088 4.088 14 C -0.170 4.170 15 C 0.057 3.943 16 H 0.111 0.889 17 N -0.367 5.367 18 C 0.103 3.897 19 C -0.236 4.236 20 C -0.097 4.097 21 C -0.211 4.211 22 C -0.097 4.097 23 C -0.236 4.236 24 C -0.090 4.090 25 H 0.064 0.936 26 H 0.047 0.953 27 H 0.060 0.940 28 H 0.071 0.929 29 H 0.053 0.947 30 H 0.092 0.908 31 H 0.079 0.921 32 H 0.104 0.896 33 H 0.234 0.766 34 H 0.138 0.862 35 H 0.156 0.844 36 H 0.155 0.845 37 H 0.158 0.842 38 H 0.141 0.859 39 H 0.084 0.916 40 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 8.437 -10.862 -11.598 17.991 hybrid contribution -0.353 -0.104 -0.091 0.379 sum 8.083 -10.966 -11.688 17.950 Atomic orbital electron populations 1.21703 0.97383 0.99984 0.98635 1.19407 0.92447 0.93630 0.87232 0.97176 1.22580 1.47481 0.97642 0.97653 0.93440 1.26964 0.95206 0.96145 1.03934 1.70874 1.40036 1.13900 1.32388 0.83043 0.76209 0.74722 0.72997 1.20435 1.19853 1.21137 1.65076 1.05628 1.14696 1.38246 1.22726 0.98141 0.88707 0.99241 1.22799 0.95319 0.97715 1.01177 1.21608 0.82475 0.91312 0.98862 0.88913 1.44754 1.21989 1.55324 1.14587 1.18097 0.91810 0.90625 0.89207 1.20865 1.02644 1.06764 0.93358 1.21186 0.94890 0.94807 0.98837 1.21194 0.97364 1.04616 0.97963 1.21162 0.99505 0.96134 0.92860 1.20815 0.96255 1.05071 1.01496 1.23172 0.90113 0.97558 0.98158 0.93579 0.95312 0.93972 0.92897 0.94715 0.90818 0.92108 0.89636 0.76563 0.86153 0.84407 0.84489 0.84250 0.85877 0.91643 0.93527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.43 8.97 71.98 0.65 -4.79 16 2 C 0.18 8.87 2.12 44.17 0.09 8.96 16 3 H 0.01 0.57 7.01 -2.39 -0.02 0.55 16 4 C -0.61 -32.45 5.97 25.60 0.15 -32.30 16 5 H 0.05 2.52 6.32 -2.91 -0.02 2.50 16 6 C -0.02 -1.25 5.45 84.65 0.46 -0.78 16 7 N -0.93 -55.42 13.59 21.45 0.29 -55.12 16 8 Si 1.11 49.22 29.91 68.60 2.05 51.27 16 9 H -0.28 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.27 -11.29 7.11 99.48 0.71 -10.58 16 11 H -0.29 -12.74 7.11 99.48 0.71 -12.03 16 12 N -0.51 -21.21 5.34 -862.24 -4.60 -25.81 16 13 C 0.04 1.48 5.01 86.44 0.43 1.91 16 14 C -0.13 -3.96 6.67 31.47 0.21 -3.75 16 15 C 0.16 4.96 2.98 46.20 0.14 5.10 16 16 H 0.09 2.68 6.67 -2.38 -0.02 2.66 16 17 N -0.74 -20.58 5.32 -313.26 -1.67 -22.25 16 18 C 0.21 5.39 6.65 38.21 0.25 5.65 16 19 C -0.21 -5.22 9.22 22.40 0.21 -5.01 16 20 C -0.08 -1.62 10.04 22.25 0.22 -1.40 16 21 C -0.19 -3.67 10.04 22.29 0.22 -3.45 16 22 C -0.08 -1.57 10.04 22.25 0.22 -1.34 16 23 C -0.21 -5.03 9.90 22.40 0.22 -4.81 16 24 C 0.04 1.49 5.98 86.65 0.52 2.00 16 25 H 0.05 1.99 6.86 -2.38 -0.02 1.97 16 26 H 0.03 1.40 7.67 -2.39 -0.02 1.39 16 27 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.26 15.61 6.29 -92.71 -0.58 15.03 16 29 H 0.03 1.46 5.72 -2.39 -0.01 1.44 16 30 H 0.07 2.50 8.13 -2.39 -0.02 2.48 16 31 H 0.06 1.91 8.05 -2.39 -0.02 1.90 16 32 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 33 H 0.40 11.06 8.54 -92.71 -0.79 10.27 16 34 H 0.12 2.86 6.31 -2.91 -0.02 2.85 16 35 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 36 H 0.14 1.92 8.06 -2.91 -0.02 1.90 16 37 H 0.14 2.07 8.06 -2.91 -0.02 2.04 16 38 H 0.12 2.64 8.06 -2.91 -0.02 2.62 16 39 H 0.07 2.49 8.14 -2.39 -0.02 2.47 16 40 H 0.05 2.01 6.31 -2.38 -0.02 2.00 16 Total: -1.00 -60.12 315.04 0.50 -59.62 By element: Atomic # 1 Polarization: 25.89 SS G_CDS: 0.42 Total: 26.31 kcal Atomic # 6 Polarization: -38.02 SS G_CDS: 4.00 Total: -34.01 kcal Atomic # 7 Polarization: -97.21 SS G_CDS: -5.98 Total: -103.19 kcal Atomic # 14 Polarization: 49.22 SS G_CDS: 2.05 Total: 51.27 kcal Total: -60.12 0.50 -59.62 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000057928208.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.287 kcal (2) G-P(sol) polarization free energy of solvation -60.124 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.501 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.83 seconds