Wall clock time and date at job start Mon Mar 30 2020 06:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46838 * 2 1 4 4 C 1.50692 * 109.47439 * 120.00290 * 2 1 3 5 5 H 1.08000 * 119.99940 * 119.99599 * 4 2 1 6 6 C 1.37882 * 120.00190 * 300.00206 * 4 2 1 7 7 N 1.31518 * 120.00015 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 119.99772 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47442 * 89.99952 * 8 6 4 10 10 H 1.48496 * 109.46949 * 210.00172 * 8 6 4 11 11 H 1.48508 * 109.47107 * 329.99807 * 8 6 4 12 12 N 1.46505 * 109.46748 * 240.00563 * 2 1 3 13 13 C 1.40002 * 119.99921 * 85.27633 * 12 2 1 14 14 C 1.38853 * 120.00161 * 359.44506 * 13 12 2 15 15 C 1.38092 * 119.99842 * 179.80975 * 14 13 12 16 16 C 1.38857 * 120.00262 * 0.42266 * 15 14 13 17 17 N 1.39997 * 120.00400 * 179.80503 * 16 15 14 18 18 C 1.48533 * 110.99674 * 116.83865 * 17 16 15 19 19 C 1.54938 * 103.22565 * 159.72376 * 18 17 16 20 20 C 1.54592 * 102.92274 * 322.58858 * 19 18 17 21 21 C 1.47901 * 111.00657 * 234.23726 * 17 16 15 22 22 C 1.38866 * 119.99622 * 359.83464 * 16 15 14 23 23 C 1.38086 * 120.00106 * 359.94973 * 22 16 15 24 24 H 1.09003 * 109.46647 * 299.99983 * 1 2 3 25 25 H 1.09006 * 109.47087 * 59.99558 * 1 2 3 26 26 H 1.08993 * 109.47007 * 179.97438 * 1 2 3 27 27 H 0.96993 * 119.99291 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99533 * 264.99665 * 12 2 1 29 29 H 1.07999 * 120.00268 * 0.02562 * 14 13 12 30 30 H 1.08002 * 119.99703 * 180.23208 * 15 14 13 31 31 H 1.09004 * 110.66919 * 278.15445 * 18 17 16 32 32 H 1.08997 * 110.67014 * 41.28969 * 18 17 16 33 33 H 1.08996 * 110.72510 * 204.22294 * 19 18 17 34 34 H 1.09005 * 110.72338 * 80.94266 * 19 18 17 35 35 H 1.09011 * 110.30323 * 263.04062 * 20 19 18 36 36 H 1.08996 * 110.31024 * 140.87699 * 20 19 18 37 37 H 1.09000 * 109.91084 * 333.50869 * 21 17 16 38 38 H 1.08991 * 109.91781 * 94.60253 * 21 17 16 39 39 H 1.07999 * 119.99601 * 179.97438 * 22 16 15 40 40 H 1.08002 * 120.00209 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 2.1374 -0.8598 3.5565 8 14 0.6259 1.2796 2.6542 9 1 -0.8019 0.8743 2.6994 10 1 0.9773 1.9951 3.9071 11 1 0.8492 2.1773 1.4924 12 7 2.0183 -0.6905 -1.1963 13 6 2.1574 0.0094 -2.4008 14 6 1.8218 1.3553 -2.4645 15 6 1.9628 2.0466 -3.6516 16 6 2.4319 1.3937 -4.7837 17 7 2.5710 2.0936 -5.9882 18 6 3.9925 2.1386 -6.4165 19 6 3.8965 2.4455 -7.9322 20 6 2.6552 1.6352 -8.3710 21 6 1.8415 1.4163 -7.0822 22 6 2.7625 0.0465 -4.7214 23 6 2.6257 -0.6437 -3.5332 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.9028 -0.5287 4.4374 28 1 2.2490 -1.6317 -1.1528 29 1 1.4537 1.8623 -1.5848 30 1 1.7052 3.0943 -3.7001 31 1 4.5261 2.9339 -5.8961 32 1 4.4755 1.1760 -6.2488 33 1 4.7883 2.0976 -8.4534 34 1 3.7409 3.5111 -8.1009 35 1 2.9588 0.6775 -8.7941 36 1 2.0707 2.2016 -9.0960 37 1 1.7611 0.3501 -6.8704 38 1 0.8471 1.8495 -7.1893 39 1 3.1270 -0.4614 -5.6020 40 1 2.8825 -1.6917 -3.4848 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062996123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:04 Heat of formation + Delta-G solvation = 39.266720 kcal Electronic energy + Delta-G solvation = -19117.840774 eV Core-core repulsion = 16318.326019 eV Total energy + Delta-G solvation = -2799.514755 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.94239 -38.08660 -35.58370 -32.93634 -31.61798 -30.62341 -29.61792 -28.92020 -26.51700 -25.10419 -23.00222 -22.04233 -21.02078 -20.81281 -19.64697 -17.59587 -16.90602 -16.05391 -15.84898 -15.44627 -14.50003 -14.15115 -14.04781 -13.50138 -13.32246 -13.20170 -12.98243 -12.84908 -12.44810 -12.31790 -12.22261 -11.70366 -11.49806 -11.48964 -11.28359 -11.19284 -10.86328 -10.71995 -10.60303 -10.20570 -9.65630 -9.39784 -9.21239 -8.70115 -8.53775 -8.42501 -6.66061 -6.24149 -4.26525 1.82591 1.97045 3.18138 3.27969 3.30633 4.04224 4.21708 4.25206 4.30449 4.59789 4.71473 4.85165 5.09394 5.22650 5.23921 5.36461 5.39943 5.60658 5.64241 5.69180 5.78912 5.87418 5.89911 5.97948 6.03589 6.16415 6.18254 6.29172 6.42493 6.47144 6.54929 6.72930 6.81714 6.85606 6.89771 7.16346 7.19748 7.43999 7.69296 7.97655 8.39630 8.57684 8.78572 9.35897 10.88471 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.045503 B = 0.004018 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.198727 B = 6966.244119 C = 7150.208598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.240 3.760 3 H 0.039 0.961 4 C -0.533 4.533 5 H 0.079 0.921 6 C 0.076 3.924 7 N -0.893 5.893 8 Si 0.889 3.111 9 H -0.276 1.276 10 H -0.294 1.294 11 H -0.265 1.265 12 N -0.718 5.718 13 C 0.236 3.764 14 C -0.202 4.202 15 C -0.041 4.041 16 C -0.012 4.012 17 N -0.472 5.472 18 C 0.038 3.962 19 C -0.124 4.124 20 C -0.132 4.132 21 C 0.036 3.964 22 C -0.096 4.096 23 C -0.204 4.204 24 H 0.046 0.954 25 H 0.035 0.965 26 H 0.054 0.946 27 H 0.267 0.733 28 H 0.395 0.605 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.081 0.919 32 H 0.047 0.953 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.076 0.924 39 H 0.109 0.891 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.576 4.824 -20.062 20.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.136 3.864 3 H 0.057 0.943 4 C -0.571 4.571 5 H 0.097 0.903 6 C -0.127 4.127 7 N -0.529 5.529 8 Si 0.719 3.281 9 H -0.203 1.203 10 H -0.221 1.221 11 H -0.190 1.190 12 N -0.340 5.340 13 C 0.128 3.872 14 C -0.225 4.225 15 C -0.061 4.061 16 C -0.108 4.108 17 N -0.193 5.193 18 C -0.089 4.089 19 C -0.162 4.162 20 C -0.170 4.170 21 C -0.091 4.091 22 C -0.117 4.117 23 C -0.228 4.228 24 H 0.064 0.936 25 H 0.054 0.946 26 H 0.073 0.927 27 H 0.077 0.923 28 H 0.230 0.770 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.088 0.912 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.127 0.873 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 0.291 5.435 -19.543 20.287 hybrid contribution -0.231 -0.550 0.243 0.644 sum 0.061 4.886 -19.300 19.909 Atomic orbital electron populations 1.22565 0.99713 1.01227 0.98979 1.19072 0.89754 0.94085 0.83494 0.94309 1.21042 1.33070 1.14480 0.88529 0.90317 1.24871 0.95551 0.96784 0.95531 1.69873 1.44897 1.40110 0.98066 0.86830 0.80561 0.83370 0.77325 1.20303 1.22117 1.19009 1.45301 1.69563 1.12159 1.06986 1.18090 0.91093 0.91533 0.86523 1.20714 1.09608 0.93480 0.98722 1.20625 0.95688 0.99035 0.90719 1.18506 1.09172 0.91410 0.91737 1.62363 1.08235 1.48008 1.00709 1.23317 0.89827 1.00870 0.94847 1.22490 0.97602 1.00759 0.95384 1.22407 0.96900 1.00204 0.97463 1.22967 0.98321 0.97719 0.90046 1.21110 0.99041 0.94559 0.96943 1.20386 1.10142 0.99874 0.92420 0.93573 0.94641 0.92654 0.92263 0.77046 0.85717 0.86240 0.90105 0.93478 0.91256 0.90824 0.91704 0.91168 0.93273 0.90544 0.87334 0.86769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.56 8.91 37.16 0.33 -3.22 16 2 C 0.24 5.48 1.84 -69.08 -0.13 5.36 16 3 H 0.04 0.92 5.55 -51.93 -0.29 0.64 16 4 C -0.53 -14.37 9.31 -34.44 -0.32 -14.69 16 5 H 0.08 2.28 7.98 -52.49 -0.42 1.86 16 6 C 0.08 2.12 5.45 -17.82 -0.10 2.02 16 7 N -0.89 -26.41 13.96 55.43 0.77 -25.64 16 8 Si 0.89 21.17 24.37 -169.99 -4.14 17.03 16 9 H -0.28 -6.40 6.87 56.52 0.39 -6.02 16 10 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.02 6.53 56.52 0.37 -5.65 16 12 N -0.72 -14.35 5.25 -53.23 -0.28 -14.63 16 13 C 0.24 4.32 6.64 -83.67 -0.56 3.77 16 14 C -0.20 -3.61 8.85 -39.41 -0.35 -3.96 16 15 C -0.04 -0.66 9.96 -39.41 -0.39 -1.05 16 16 C -0.01 -0.18 4.87 -83.67 -0.41 -0.59 16 17 N -0.47 -6.18 5.28 -167.10 -0.88 -7.06 16 18 C 0.04 0.43 6.43 -1.90 -0.01 0.41 16 19 C -0.12 -1.09 7.06 -24.87 -0.18 -1.27 16 20 C -0.13 -1.15 6.93 -25.38 -0.18 -1.32 16 21 C 0.04 0.41 6.49 -2.76 -0.02 0.39 16 22 C -0.10 -1.41 7.90 -39.40 -0.31 -1.72 16 23 C -0.20 -3.28 9.89 -39.41 -0.39 -3.67 16 24 H 0.05 1.02 3.27 -51.93 -0.17 0.85 16 25 H 0.03 0.68 7.69 -51.93 -0.40 0.28 16 26 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 27 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 28 H 0.40 7.54 8.55 -40.82 -0.35 7.19 16 29 H 0.12 2.32 6.09 -52.49 -0.32 2.00 16 30 H 0.12 1.75 8.06 -52.49 -0.42 1.33 16 31 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.54 7.03 -51.93 -0.36 0.18 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.05 0.57 6.30 -51.93 -0.33 0.24 16 38 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.11 1.40 7.03 -52.49 -0.37 1.03 16 40 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 LS Contribution 310.82 15.07 4.68 4.68 Total: -1.00 -28.58 310.82 -8.84 -37.42 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: -5.99 Total: 7.75 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: -3.00 Total: -19.55 kcal Atomic # 7 Polarization: -46.94 SS G_CDS: -0.39 Total: -47.33 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -4.14 Total: 17.03 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -28.58 -8.84 -37.42 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062996123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.685 kcal (2) G-P(sol) polarization free energy of solvation -28.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 48.109 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.842 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.419 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds