Wall clock time and date at job start Mon Mar 30 2020 06:46:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09002 * 109.46838 * 2 1 4 4 C 1.50692 * 109.47439 * 120.00290 * 2 1 3 5 5 H 1.08000 * 119.99940 * 119.99599 * 4 2 1 6 6 C 1.37882 * 120.00190 * 300.00206 * 4 2 1 7 7 N 1.31518 * 120.00015 * 179.97438 * 6 4 2 8 8 Si 1.86796 * 119.99772 * 359.97438 * 6 4 2 9 9 H 1.48496 * 109.47442 * 89.99952 * 8 6 4 10 10 H 1.48496 * 109.46949 * 210.00172 * 8 6 4 11 11 H 1.48508 * 109.47107 * 329.99807 * 8 6 4 12 12 N 1.46505 * 109.46748 * 240.00563 * 2 1 3 13 13 C 1.40002 * 119.99921 * 85.27633 * 12 2 1 14 14 C 1.38853 * 120.00161 * 359.44506 * 13 12 2 15 15 C 1.38092 * 119.99842 * 179.80975 * 14 13 12 16 16 C 1.38857 * 120.00262 * 0.42266 * 15 14 13 17 17 N 1.39997 * 120.00400 * 179.80503 * 16 15 14 18 18 C 1.48533 * 110.99674 * 116.83865 * 17 16 15 19 19 C 1.54938 * 103.22565 * 159.72376 * 18 17 16 20 20 C 1.54592 * 102.92274 * 322.58858 * 19 18 17 21 21 C 1.47901 * 111.00657 * 234.23726 * 17 16 15 22 22 C 1.38866 * 119.99622 * 359.83464 * 16 15 14 23 23 C 1.38086 * 120.00106 * 359.94973 * 22 16 15 24 24 H 1.09003 * 109.46647 * 299.99983 * 1 2 3 25 25 H 1.09006 * 109.47087 * 59.99558 * 1 2 3 26 26 H 1.08993 * 109.47007 * 179.97438 * 1 2 3 27 27 H 0.96993 * 119.99291 * 180.02562 * 7 6 4 28 28 H 0.97001 * 119.99533 * 264.99665 * 12 2 1 29 29 H 1.07999 * 120.00268 * 0.02562 * 14 13 12 30 30 H 1.08002 * 119.99703 * 180.23208 * 15 14 13 31 31 H 1.09004 * 110.66919 * 278.15445 * 18 17 16 32 32 H 1.08997 * 110.67014 * 41.28969 * 18 17 16 33 33 H 1.08996 * 110.72510 * 204.22294 * 19 18 17 34 34 H 1.09005 * 110.72338 * 80.94266 * 19 18 17 35 35 H 1.09011 * 110.30323 * 263.04062 * 20 19 18 36 36 H 1.08996 * 110.31024 * 140.87699 * 20 19 18 37 37 H 1.09000 * 109.91084 * 333.50869 * 21 17 16 38 38 H 1.08991 * 109.91781 * 94.60253 * 21 17 16 39 39 H 1.07999 * 119.99601 * 179.97438 * 22 16 15 40 40 H 1.08002 * 120.00209 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.6533 -1.5885 1.1312 6 6 1.6994 -0.2395 2.4827 7 7 2.1374 -0.8598 3.5565 8 14 0.6259 1.2796 2.6542 9 1 -0.8019 0.8743 2.6994 10 1 0.9773 1.9951 3.9071 11 1 0.8492 2.1773 1.4924 12 7 2.0183 -0.6905 -1.1963 13 6 2.1574 0.0094 -2.4008 14 6 1.8218 1.3553 -2.4645 15 6 1.9628 2.0466 -3.6516 16 6 2.4319 1.3937 -4.7837 17 7 2.5710 2.0936 -5.9882 18 6 3.9925 2.1386 -6.4165 19 6 3.8965 2.4455 -7.9322 20 6 2.6552 1.6352 -8.3710 21 6 1.8415 1.4163 -7.0822 22 6 2.7625 0.0465 -4.7214 23 6 2.6257 -0.6437 -3.5332 24 1 -0.3633 0.5139 0.8900 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 1.9028 -0.5287 4.4374 28 1 2.2490 -1.6317 -1.1528 29 1 1.4537 1.8623 -1.5848 30 1 1.7052 3.0943 -3.7001 31 1 4.5261 2.9339 -5.8961 32 1 4.4755 1.1760 -6.2488 33 1 4.7883 2.0976 -8.4534 34 1 3.7409 3.5111 -8.1009 35 1 2.9588 0.6775 -8.7941 36 1 2.0707 2.2016 -9.0960 37 1 1.7611 0.3501 -6.8704 38 1 0.8471 1.8495 -7.1893 39 1 3.1270 -0.4614 -5.6020 40 1 2.8825 -1.6917 -3.4848 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062996123.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:03 Heat of formation + Delta-G solvation = 21.412966 kcal Electronic energy + Delta-G solvation = -19118.614971 eV Core-core repulsion = 16318.326019 eV Total energy + Delta-G solvation = -2800.288952 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.06169 -39.30071 -37.08425 -34.67713 -33.05497 -31.88967 -31.08121 -29.73440 -27.84120 -27.04272 -24.30804 -23.21000 -22.34836 -21.70504 -20.97399 -19.30693 -18.18296 -17.50232 -17.24394 -16.74519 -15.98008 -15.49071 -15.04729 -14.91848 -14.88969 -14.37913 -14.33535 -14.18793 -13.92850 -13.74089 -13.56245 -13.00531 -12.86270 -12.73351 -12.50423 -12.23644 -12.15515 -12.02576 -11.87434 -11.47401 -11.40594 -11.24906 -10.94566 -10.58159 -9.80625 -9.42338 -8.38317 -8.08546 -6.44771 0.55217 0.69013 1.29502 1.35000 1.44790 2.26138 2.75154 2.93179 2.99461 3.10459 3.80219 3.96410 4.01797 4.11593 4.16413 4.41103 4.41801 4.51444 4.54920 4.62652 4.66341 4.71532 4.80754 4.85910 4.94449 4.95905 5.02475 5.09962 5.17129 5.20337 5.27569 5.34840 5.38855 5.49944 5.56012 5.65535 5.88106 5.94706 6.05986 6.53971 6.56745 6.72226 7.05742 7.24815 8.78148 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.045503 B = 0.004018 C = 0.003915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 615.198727 B = 6966.244119 C = 7150.208598 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.250 3.750 3 H 0.032 0.968 4 C -0.537 4.537 5 H 0.042 0.958 6 C 0.021 3.979 7 N -0.941 5.941 8 Si 0.948 3.052 9 H -0.262 1.262 10 H -0.295 1.295 11 H -0.247 1.247 12 N -0.727 5.727 13 C 0.212 3.788 14 C -0.213 4.213 15 C -0.048 4.048 16 C -0.001 4.001 17 N -0.485 5.485 18 C 0.033 3.967 19 C -0.117 4.117 20 C -0.126 4.126 21 C 0.032 3.968 22 C -0.093 4.093 23 C -0.201 4.201 24 H 0.041 0.959 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.270 0.730 28 H 0.396 0.604 29 H 0.114 0.886 30 H 0.131 0.869 31 H 0.076 0.924 32 H 0.045 0.955 33 H 0.087 0.913 34 H 0.076 0.924 35 H 0.077 0.923 36 H 0.083 0.917 37 H 0.045 0.955 38 H 0.075 0.925 39 H 0.132 0.868 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.089 6.087 -22.973 23.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.144 3.856 3 H 0.050 0.950 4 C -0.575 4.575 5 H 0.060 0.940 6 C -0.178 4.178 7 N -0.580 5.580 8 Si 0.775 3.225 9 H -0.188 1.188 10 H -0.222 1.222 11 H -0.171 1.171 12 N -0.352 5.352 13 C 0.106 3.894 14 C -0.237 4.237 15 C -0.068 4.068 16 C -0.097 4.097 17 N -0.207 5.207 18 C -0.093 4.093 19 C -0.155 4.155 20 C -0.164 4.164 21 C -0.095 4.095 22 C -0.114 4.114 23 C -0.225 4.225 24 H 0.060 0.940 25 H 0.075 0.925 26 H 0.072 0.928 27 H 0.079 0.921 28 H 0.230 0.770 29 H 0.132 0.868 30 H 0.149 0.851 31 H 0.095 0.905 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.064 0.936 38 H 0.093 0.907 39 H 0.150 0.850 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -0.191 6.709 -22.518 23.497 hybrid contribution 0.019 -0.966 0.989 1.382 sum -0.172 5.743 -21.530 22.283 Atomic orbital electron populations 1.22451 0.98284 1.01398 0.99718 1.18759 0.90727 0.93174 0.82928 0.95006 1.21334 1.32121 1.13450 0.90588 0.93951 1.25725 0.97011 0.99969 0.95106 1.70013 1.46970 1.42277 0.98747 0.85866 0.79226 0.79763 0.77694 1.18828 1.22236 1.17094 1.45038 1.71127 1.12153 1.06924 1.18264 0.92778 0.91878 0.86442 1.20731 1.10299 0.93519 0.99118 1.20777 0.95838 0.99636 0.90530 1.18717 1.07099 0.91556 0.92308 1.62395 1.09665 1.48039 1.00557 1.23394 0.88544 1.00707 0.96693 1.22483 0.98484 1.01098 0.93477 1.22405 0.96518 1.01100 0.96380 1.23045 0.98581 0.97250 0.90586 1.21345 0.98299 0.94542 0.97167 1.20588 1.09168 1.00632 0.92106 0.94038 0.92480 0.92837 0.92132 0.76987 0.86793 0.85109 0.90514 0.93654 0.89421 0.90534 0.90468 0.89876 0.93625 0.90660 0.85041 0.85437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.66 8.91 71.98 0.64 -6.02 16 2 C 0.25 11.42 1.84 44.24 0.08 11.50 16 3 H 0.03 1.51 5.55 -2.39 -0.01 1.50 16 4 C -0.54 -29.76 9.31 25.60 0.24 -29.52 16 5 H 0.04 2.58 7.98 -2.91 -0.02 2.56 16 6 C 0.02 1.18 5.45 84.66 0.46 1.64 16 7 N -0.94 -57.37 13.96 21.45 0.30 -57.07 16 8 Si 0.95 43.52 24.37 68.60 1.67 45.19 16 9 H -0.26 -11.41 6.87 99.48 0.68 -10.73 16 10 H -0.29 -13.49 7.11 99.48 0.71 -12.78 16 11 H -0.25 -10.53 6.53 99.48 0.65 -9.88 16 12 N -0.73 -29.28 5.25 -322.31 -1.69 -30.97 16 13 C 0.21 7.63 6.64 38.13 0.25 7.88 16 14 C -0.21 -7.46 8.85 22.38 0.20 -7.26 16 15 C -0.05 -1.48 9.96 22.38 0.22 -1.26 16 16 C 0.00 -0.02 4.87 38.14 0.19 0.17 16 17 N -0.48 -11.49 5.28 -682.57 -3.61 -15.09 16 18 C 0.03 0.65 6.43 86.65 0.56 1.21 16 19 C -0.12 -1.66 7.06 31.80 0.22 -1.44 16 20 C -0.13 -1.74 6.93 31.47 0.22 -1.52 16 21 C 0.03 0.62 6.49 86.44 0.56 1.19 16 22 C -0.09 -2.52 7.90 22.38 0.18 -2.34 16 23 C -0.20 -6.17 9.89 22.38 0.22 -5.95 16 24 H 0.04 1.75 3.27 -2.39 -0.01 1.74 16 25 H 0.06 2.10 7.69 -2.38 -0.02 2.08 16 26 H 0.05 2.20 8.14 -2.39 -0.02 2.18 16 27 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 28 H 0.40 15.44 8.55 -92.71 -0.79 14.65 16 29 H 0.11 4.17 6.09 -2.91 -0.02 4.16 16 30 H 0.13 3.63 8.06 -2.91 -0.02 3.60 16 31 H 0.08 1.57 8.14 -2.38 -0.02 1.55 16 32 H 0.05 0.92 7.03 -2.39 -0.02 0.90 16 33 H 0.09 0.95 8.14 -2.39 -0.02 0.93 16 34 H 0.08 1.06 8.14 -2.38 -0.02 1.04 16 35 H 0.08 0.90 8.14 -2.38 -0.02 0.88 16 36 H 0.08 0.96 8.14 -2.39 -0.02 0.94 16 37 H 0.05 0.92 6.30 -2.39 -0.02 0.90 16 38 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 39 H 0.13 2.96 7.03 -2.91 -0.02 2.94 16 40 H 0.13 3.50 8.06 -2.91 -0.02 3.48 16 Total: -1.00 -62.04 310.82 1.08 -60.96 By element: Atomic # 1 Polarization: 28.54 SS G_CDS: 0.16 Total: 28.70 kcal Atomic # 6 Polarization: -35.97 SS G_CDS: 4.24 Total: -31.73 kcal Atomic # 7 Polarization: -98.13 SS G_CDS: -5.00 Total: -103.13 kcal Atomic # 14 Polarization: 43.52 SS G_CDS: 1.67 Total: 45.19 kcal Total: -62.04 1.08 -60.96 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062996123.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.373 kcal (2) G-P(sol) polarization free energy of solvation -62.035 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.338 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds