Wall clock time and date at job start Mon Mar 30 2020 06:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46721 * 2 1 4 4 C 1.50695 * 109.46987 * 240.00013 * 2 1 3 5 5 H 1.07994 * 120.00308 * 244.67369 * 4 2 1 6 6 C 1.37887 * 120.00060 * 64.67962 * 4 2 1 7 7 N 1.31517 * 119.99725 * 187.13947 * 6 4 2 8 8 Si 1.86801 * 119.99941 * 7.13674 * 6 4 2 9 9 H 1.48500 * 109.46942 * 270.00021 * 8 6 4 10 10 H 1.48500 * 109.47133 * 30.00160 * 8 6 4 11 11 H 1.48494 * 109.46913 * 150.00135 * 8 6 4 12 12 N 1.46494 * 109.47134 * 120.00017 * 2 1 3 13 13 C 1.40001 * 120.00145 * 274.99918 * 12 2 1 14 14 C 1.38860 * 120.00015 * 359.72374 * 13 12 2 15 15 C 1.38093 * 120.00060 * 179.81096 * 14 13 12 16 16 C 1.38852 * 120.00061 * 0.42283 * 15 14 13 17 17 N 1.40001 * 120.00200 * 179.81096 * 16 15 14 18 18 C 1.48534 * 111.00208 * 117.20825 * 17 16 15 19 19 C 1.54934 * 103.22593 * 159.72184 * 18 17 16 20 20 C 1.54592 * 102.92148 * 322.58576 * 19 18 17 21 21 C 1.47903 * 110.99853 * 234.60554 * 17 16 15 22 22 C 1.38867 * 120.00021 * 359.83095 * 16 15 14 23 23 C 1.38093 * 119.99666 * 359.95952 * 22 16 15 24 24 H 1.09001 * 109.47393 * 174.55263 * 1 2 3 25 25 H 1.09006 * 109.47206 * 294.55216 * 1 2 3 26 26 H 1.08997 * 109.47667 * 54.55034 * 1 2 3 27 27 H 0.96992 * 120.00114 * 354.92019 * 7 6 4 28 28 H 0.97006 * 120.00174 * 95.00020 * 12 2 1 29 29 H 1.08002 * 120.00021 * 0.02562 * 14 13 12 30 30 H 1.08001 * 119.99893 * 180.22941 * 15 14 13 31 31 H 1.08995 * 110.66572 * 278.15733 * 18 17 16 32 32 H 1.08999 * 110.66663 * 41.28981 * 18 17 16 33 33 H 1.09007 * 110.72243 * 204.22811 * 19 18 17 34 34 H 1.09000 * 110.72808 * 80.94458 * 19 18 17 35 35 H 1.09002 * 110.31027 * 263.03852 * 20 19 18 36 36 H 1.09002 * 110.31045 * 140.87796 * 20 19 18 37 37 H 1.08997 * 109.92105 * 333.50591 * 21 17 16 38 38 H 1.09006 * 109.91609 * 94.60386 * 21 17 16 39 39 H 1.07995 * 119.99985 * 179.97438 * 22 16 15 40 40 H 1.07999 * 119.99488 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.5894 -1.6304 -1.1332 6 6 1.7805 -0.1857 -2.4805 7 7 2.0940 -0.8728 -3.5572 8 14 0.9943 1.5008 -2.6445 9 1 -0.4832 1.3568 -2.6805 10 1 1.3816 2.3425 -1.4840 11 1 1.4597 2.1439 -3.8995 12 7 2.0183 -0.6906 1.1961 13 6 2.1520 0.0078 2.4021 14 6 1.8272 1.3565 2.4631 15 6 1.9554 2.0444 3.6536 16 6 2.4174 1.3897 4.7875 17 7 2.5512 2.0881 5.9935 18 6 1.6521 1.5287 7.0351 19 6 2.2885 2.0263 8.3572 20 6 3.8042 1.9339 8.0674 21 6 3.9225 1.9578 6.5322 22 6 2.7473 0.0422 4.7253 23 6 2.6149 -0.6468 3.5358 24 1 -0.3634 -1.0230 -0.0976 25 1 -0.3634 0.4270 0.9348 26 1 -0.3634 0.5960 -0.8371 27 1 2.5684 -1.7146 -3.4743 28 1 2.2490 -1.6318 1.1526 29 1 1.4711 1.8666 1.5803 30 1 1.6993 3.0925 3.7019 31 1 0.6417 1.9219 6.9227 32 1 1.6487 0.4394 6.9959 33 1 2.0140 1.3745 9.1867 34 1 1.9971 3.0564 8.5619 35 1 4.2092 1.0027 8.4636 36 1 4.3250 2.7881 8.5002 37 1 4.3732 1.0299 6.1800 38 1 4.5277 2.8076 6.2165 39 1 3.1070 -0.4670 5.6071 40 1 2.8718 -1.6946 3.4874 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062996124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:07 Heat of formation + Delta-G solvation = 31.139825 kcal Electronic energy + Delta-G solvation = -19125.432003 eV Core-core repulsion = 16325.564840 eV Total energy + Delta-G solvation = -2799.867163 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.94714 -38.08537 -35.56591 -32.98060 -31.60099 -30.62350 -29.50290 -28.92696 -26.49435 -24.73353 -22.94856 -22.04665 -21.00888 -20.68640 -19.56112 -17.96070 -17.12360 -16.20575 -16.01835 -15.19837 -14.25362 -14.19219 -14.01153 -13.46677 -13.24315 -13.20661 -12.99730 -12.75005 -12.49689 -12.32740 -11.95269 -11.72876 -11.52175 -11.44547 -11.37280 -11.21775 -10.74027 -10.67008 -10.60179 -10.06517 -9.87991 -9.33112 -8.85950 -8.57256 -8.52352 -8.43544 -6.75238 -6.51964 -4.26840 1.81838 1.96562 3.29255 3.35815 3.49961 4.03650 4.21040 4.29949 4.36709 4.59089 4.70852 4.84631 5.16095 5.21784 5.23176 5.35568 5.39133 5.60011 5.63712 5.68189 5.78188 5.86414 5.89577 5.97903 6.02997 6.16268 6.21730 6.34162 6.42444 6.50388 6.57836 6.77192 6.81302 6.85223 6.89059 7.18427 7.23259 7.61188 7.73450 8.06339 8.25809 8.56093 8.77492 9.44243 10.81059 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.044204 B = 0.004060 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.268018 B = 6895.046545 C = 7104.633979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.239 3.761 3 H 0.039 0.961 4 C -0.608 4.608 5 H 0.060 0.940 6 C 0.033 3.967 7 N -0.905 5.905 8 Si 1.054 2.946 9 H -0.281 1.281 10 H -0.277 1.277 11 H -0.287 1.287 12 N -0.718 5.718 13 C 0.236 3.764 14 C -0.202 4.202 15 C -0.040 4.040 16 C -0.013 4.013 17 N -0.472 5.472 18 C 0.038 3.962 19 C -0.124 4.124 20 C -0.132 4.132 21 C 0.036 3.964 22 C -0.096 4.096 23 C -0.206 4.206 24 H 0.051 0.949 25 H 0.032 0.968 26 H 0.049 0.951 27 H 0.269 0.731 28 H 0.393 0.607 29 H 0.126 0.874 30 H 0.120 0.880 31 H 0.080 0.920 32 H 0.046 0.954 33 H 0.069 0.931 34 H 0.073 0.927 35 H 0.064 0.936 36 H 0.070 0.930 37 H 0.049 0.951 38 H 0.077 0.923 39 H 0.108 0.892 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.346 4.884 20.539 21.115 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.135 3.865 3 H 0.056 0.944 4 C -0.646 4.646 5 H 0.079 0.921 6 C -0.173 4.173 7 N -0.539 5.539 8 Si 0.883 3.117 9 H -0.208 1.208 10 H -0.203 1.203 11 H -0.213 1.213 12 N -0.340 5.340 13 C 0.127 3.873 14 C -0.225 4.225 15 C -0.060 4.060 16 C -0.109 4.109 17 N -0.193 5.193 18 C -0.089 4.089 19 C -0.162 4.162 20 C -0.170 4.170 21 C -0.091 4.091 22 C -0.116 4.116 23 C -0.230 4.230 24 H 0.070 0.930 25 H 0.051 0.949 26 H 0.068 0.932 27 H 0.079 0.921 28 H 0.227 0.773 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.099 0.901 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.092 0.908 35 H 0.083 0.917 36 H 0.089 0.911 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.126 0.874 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -0.432 6.605 19.081 20.196 hybrid contribution 0.931 -2.535 1.143 2.933 sum 0.499 4.070 20.224 20.636 Atomic orbital electron populations 1.22516 0.99571 1.01243 0.98963 1.19166 0.89966 0.94128 0.83282 0.94368 1.22151 1.40101 1.11297 0.91060 0.92136 1.25742 0.96126 1.03743 0.91644 1.70815 1.37002 1.15691 1.30385 0.83865 0.76470 0.75332 0.76020 1.20757 1.20316 1.21310 1.45384 1.69514 1.12137 1.07013 1.18119 0.91071 0.91607 0.86541 1.20718 1.09756 0.93376 0.98666 1.20628 0.95789 0.99001 0.90588 1.18504 1.09407 0.91257 0.91709 1.62369 1.04235 1.51402 1.01267 1.23312 0.97553 0.97727 0.90263 1.22489 0.94958 1.01835 0.96945 1.22408 0.96891 1.01927 0.95745 1.22973 0.90998 1.01386 0.93715 1.21107 0.99214 0.94389 0.96915 1.20378 1.10344 0.99806 0.92474 0.92985 0.94852 0.93221 0.92117 0.77349 0.85658 0.86177 0.90141 0.93539 0.91278 0.90805 0.91716 0.91140 0.93278 0.90481 0.87366 0.86916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.52 9.03 37.16 0.34 -3.18 16 2 C 0.24 5.51 1.83 -69.09 -0.13 5.38 16 3 H 0.04 0.91 4.97 -51.93 -0.26 0.66 16 4 C -0.61 -16.47 9.09 -34.44 -0.31 -16.78 16 5 H 0.06 1.75 7.95 -52.49 -0.42 1.33 16 6 C 0.03 0.93 5.42 -17.81 -0.10 0.83 16 7 N -0.91 -27.15 13.70 55.43 0.76 -26.39 16 8 Si 1.05 24.69 25.36 -169.99 -4.31 20.38 16 9 H -0.28 -6.23 6.77 56.52 0.38 -5.85 16 10 H -0.28 -6.03 6.38 56.52 0.36 -5.67 16 11 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.72 -14.68 5.25 -53.23 -0.28 -14.96 16 13 C 0.24 4.38 6.64 -83.67 -0.56 3.82 16 14 C -0.20 -3.64 8.87 -39.40 -0.35 -3.99 16 15 C -0.04 -0.65 9.96 -39.41 -0.39 -1.04 16 16 C -0.01 -0.19 4.87 -83.67 -0.41 -0.60 16 17 N -0.47 -6.20 5.28 -167.09 -0.88 -7.08 16 18 C 0.04 0.42 6.43 -1.90 -0.01 0.41 16 19 C -0.12 -1.09 7.06 -24.87 -0.18 -1.26 16 20 C -0.13 -1.16 6.93 -25.38 -0.18 -1.33 16 21 C 0.04 0.41 6.49 -2.75 -0.02 0.39 16 22 C -0.10 -1.42 7.90 -39.40 -0.31 -1.73 16 23 C -0.21 -3.37 9.89 -39.41 -0.39 -3.76 16 24 H 0.05 1.12 8.14 -51.93 -0.42 0.69 16 25 H 0.03 0.64 7.83 -51.93 -0.41 0.23 16 26 H 0.05 1.06 4.45 -51.93 -0.23 0.83 16 27 H 0.27 8.02 8.72 -40.82 -0.36 7.66 16 28 H 0.39 7.72 8.54 -40.82 -0.35 7.37 16 29 H 0.13 2.34 6.21 -52.49 -0.33 2.01 16 30 H 0.12 1.76 8.06 -52.49 -0.42 1.33 16 31 H 0.08 0.89 8.14 -51.93 -0.42 0.46 16 32 H 0.05 0.53 7.00 -51.93 -0.36 0.16 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 35 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 36 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.05 0.58 6.33 -51.93 -0.33 0.25 16 38 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 39 H 0.11 1.41 7.04 -52.49 -0.37 1.04 16 40 H 0.11 1.68 8.06 -52.49 -0.42 1.26 16 LS Contribution 312.40 15.07 4.71 4.71 Total: -1.00 -28.72 312.40 -9.06 -37.78 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.07 Total: 8.40 kcal Atomic # 6 Polarization: -19.85 SS G_CDS: -2.99 Total: -22.84 kcal Atomic # 7 Polarization: -48.03 SS G_CDS: -0.40 Total: -48.43 kcal Atomic # 14 Polarization: 24.69 SS G_CDS: -4.31 Total: 20.38 kcal Total LS contribution 4.71 Total: 4.71 kcal Total: -28.72 -9.06 -37.78 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062996124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.921 kcal (2) G-P(sol) polarization free energy of solvation -28.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.200 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds