Wall clock time and date at job start Mon Mar 30 2020 06:46:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09005 * 109.46721 * 2 1 4 4 C 1.50695 * 109.46987 * 240.00013 * 2 1 3 5 5 H 1.07994 * 120.00308 * 244.67369 * 4 2 1 6 6 C 1.37887 * 120.00060 * 64.67962 * 4 2 1 7 7 N 1.31517 * 119.99725 * 187.13947 * 6 4 2 8 8 Si 1.86801 * 119.99941 * 7.13674 * 6 4 2 9 9 H 1.48500 * 109.46942 * 270.00021 * 8 6 4 10 10 H 1.48500 * 109.47133 * 30.00160 * 8 6 4 11 11 H 1.48494 * 109.46913 * 150.00135 * 8 6 4 12 12 N 1.46494 * 109.47134 * 120.00017 * 2 1 3 13 13 C 1.40001 * 120.00145 * 274.99918 * 12 2 1 14 14 C 1.38860 * 120.00015 * 359.72374 * 13 12 2 15 15 C 1.38093 * 120.00060 * 179.81096 * 14 13 12 16 16 C 1.38852 * 120.00061 * 0.42283 * 15 14 13 17 17 N 1.40001 * 120.00200 * 179.81096 * 16 15 14 18 18 C 1.48534 * 111.00208 * 117.20825 * 17 16 15 19 19 C 1.54934 * 103.22593 * 159.72184 * 18 17 16 20 20 C 1.54592 * 102.92148 * 322.58576 * 19 18 17 21 21 C 1.47903 * 110.99853 * 234.60554 * 17 16 15 22 22 C 1.38867 * 120.00021 * 359.83095 * 16 15 14 23 23 C 1.38093 * 119.99666 * 359.95952 * 22 16 15 24 24 H 1.09001 * 109.47393 * 174.55263 * 1 2 3 25 25 H 1.09006 * 109.47206 * 294.55216 * 1 2 3 26 26 H 1.08997 * 109.47667 * 54.55034 * 1 2 3 27 27 H 0.96992 * 120.00114 * 354.92019 * 7 6 4 28 28 H 0.97006 * 120.00174 * 95.00020 * 12 2 1 29 29 H 1.08002 * 120.00021 * 0.02562 * 14 13 12 30 30 H 1.08001 * 119.99893 * 180.22941 * 15 14 13 31 31 H 1.08995 * 110.66572 * 278.15733 * 18 17 16 32 32 H 1.08999 * 110.66663 * 41.28981 * 18 17 16 33 33 H 1.09007 * 110.72243 * 204.22811 * 19 18 17 34 34 H 1.09000 * 110.72808 * 80.94458 * 19 18 17 35 35 H 1.09002 * 110.31027 * 263.03852 * 20 19 18 36 36 H 1.09002 * 110.31045 * 140.87796 * 20 19 18 37 37 H 1.08997 * 109.92105 * 333.50591 * 21 17 16 38 38 H 1.09006 * 109.91609 * 94.60386 * 21 17 16 39 39 H 1.07995 * 119.99985 * 179.97438 * 22 16 15 40 40 H 1.07999 * 119.99488 * 179.97438 * 23 22 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0322 -0.7104 -1.2304 5 1 2.5894 -1.6304 -1.1332 6 6 1.7805 -0.1857 -2.4805 7 7 2.0940 -0.8728 -3.5572 8 14 0.9943 1.5008 -2.6445 9 1 -0.4832 1.3568 -2.6805 10 1 1.3816 2.3425 -1.4840 11 1 1.4597 2.1439 -3.8995 12 7 2.0183 -0.6906 1.1961 13 6 2.1520 0.0078 2.4021 14 6 1.8272 1.3565 2.4631 15 6 1.9554 2.0444 3.6536 16 6 2.4174 1.3897 4.7875 17 7 2.5512 2.0881 5.9935 18 6 1.6521 1.5287 7.0351 19 6 2.2885 2.0263 8.3572 20 6 3.8042 1.9339 8.0674 21 6 3.9225 1.9578 6.5322 22 6 2.7473 0.0422 4.7253 23 6 2.6149 -0.6468 3.5358 24 1 -0.3634 -1.0230 -0.0976 25 1 -0.3634 0.4270 0.9348 26 1 -0.3634 0.5960 -0.8371 27 1 2.5684 -1.7146 -3.4743 28 1 2.2490 -1.6318 1.1526 29 1 1.4711 1.8666 1.5803 30 1 1.6993 3.0925 3.7019 31 1 0.6417 1.9219 6.9227 32 1 1.6487 0.4394 6.9959 33 1 2.0140 1.3745 9.1867 34 1 1.9971 3.0564 8.5619 35 1 4.2092 1.0027 8.4636 36 1 4.3250 2.7881 8.5002 37 1 4.3732 1.0299 6.1800 38 1 4.5277 2.8076 6.2165 39 1 3.1070 -0.4670 5.6071 40 1 2.8718 -1.6946 3.4874 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062996124.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:46:07 Heat of formation + Delta-G solvation = 13.296895 kcal Electronic energy + Delta-G solvation = -19126.205731 eV Core-core repulsion = 16325.564840 eV Total energy + Delta-G solvation = -2800.640891 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.07583 -39.30920 -37.09162 -34.75642 -33.00981 -31.90134 -30.99311 -29.74397 -27.81499 -26.69435 -24.25596 -23.22029 -22.21502 -21.70506 -20.95596 -19.90637 -18.40655 -17.54374 -17.12076 -16.58209 -15.69193 -15.53774 -15.04884 -14.92080 -14.70932 -14.57586 -14.28371 -14.05188 -13.92808 -13.83660 -13.45404 -13.02533 -12.94703 -12.57740 -12.42080 -12.21471 -12.11013 -12.02277 -11.73885 -11.66658 -11.41369 -11.00602 -10.73784 -10.59189 -9.82548 -9.43854 -8.85395 -8.09325 -6.49732 0.53218 0.67206 1.41828 1.51593 1.67341 2.41970 2.74592 2.92233 3.02562 3.09315 3.79218 3.95515 3.99747 4.09866 4.14937 4.40174 4.42714 4.52218 4.55109 4.64819 4.67714 4.73828 4.79466 4.86505 4.94837 4.96867 5.01647 5.09198 5.15735 5.19845 5.27753 5.34264 5.45974 5.52508 5.62621 5.67368 5.91350 5.92677 5.94723 6.30196 6.55798 6.73351 7.04194 7.30744 8.57645 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.044204 B = 0.004060 C = 0.003940 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 633.268018 B = 6895.046545 C = 7104.633979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.246 3.754 3 H 0.035 0.965 4 C -0.608 4.608 5 H 0.027 0.973 6 C -0.017 4.017 7 N -0.939 5.939 8 Si 1.087 2.913 9 H -0.258 1.258 10 H -0.251 1.251 11 H -0.289 1.289 12 N -0.730 5.730 13 C 0.211 3.789 14 C -0.212 4.212 15 C -0.047 4.047 16 C 0.000 4.000 17 N -0.484 5.484 18 C 0.033 3.967 19 C -0.117 4.117 20 C -0.126 4.126 21 C 0.031 3.969 22 C -0.093 4.093 23 C -0.204 4.204 24 H 0.043 0.957 25 H 0.055 0.945 26 H 0.050 0.950 27 H 0.254 0.746 28 H 0.392 0.608 29 H 0.116 0.884 30 H 0.133 0.867 31 H 0.079 0.921 32 H 0.045 0.955 33 H 0.088 0.912 34 H 0.077 0.923 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.043 0.957 38 H 0.074 0.926 39 H 0.131 0.869 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.137 6.375 23.613 24.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.141 3.859 3 H 0.053 0.947 4 C -0.646 4.646 5 H 0.045 0.955 6 C -0.216 4.216 7 N -0.575 5.575 8 Si 0.909 3.091 9 H -0.183 1.183 10 H -0.175 1.175 11 H -0.216 1.216 12 N -0.355 5.355 13 C 0.105 3.895 14 C -0.236 4.236 15 C -0.066 4.066 16 C -0.097 4.097 17 N -0.206 5.206 18 C -0.093 4.093 19 C -0.155 4.155 20 C -0.164 4.164 21 C -0.095 4.095 22 C -0.113 4.113 23 C -0.228 4.228 24 H 0.062 0.938 25 H 0.074 0.926 26 H 0.069 0.931 27 H 0.063 0.937 28 H 0.226 0.774 29 H 0.134 0.866 30 H 0.151 0.849 31 H 0.097 0.903 32 H 0.063 0.937 33 H 0.106 0.894 34 H 0.095 0.905 35 H 0.095 0.905 36 H 0.101 0.899 37 H 0.062 0.938 38 H 0.093 0.907 39 H 0.149 0.851 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -0.909 8.094 22.223 23.669 hybrid contribution 1.170 -3.023 0.368 3.262 sum 0.261 5.071 22.591 23.155 Atomic orbital electron populations 1.22390 0.98044 1.00996 1.00161 1.18880 0.90992 0.93351 0.82687 0.94719 1.22397 1.38904 1.10115 0.93185 0.95516 1.27145 0.96308 1.06634 0.91467 1.70941 1.39154 1.15808 1.31553 0.83499 0.77163 0.71622 0.76839 1.18310 1.17516 1.21598 1.45125 1.71186 1.12088 1.07079 1.18295 0.92826 0.92011 0.86404 1.20752 1.10369 0.93324 0.99153 1.20794 0.95843 0.99667 0.90321 1.18721 1.07239 0.91347 0.92355 1.62406 1.05662 1.51365 1.01138 1.23395 0.97336 0.97656 0.90888 1.22485 0.94512 1.02403 0.96119 1.22404 0.97168 1.03195 0.93645 1.23049 0.89828 1.01002 0.95661 1.21339 0.98489 0.94421 0.97091 1.20571 1.09460 1.00510 0.92238 0.93776 0.92639 0.93112 0.93737 0.77445 0.86557 0.84872 0.90288 0.93662 0.89373 0.90463 0.90525 0.89889 0.93816 0.90744 0.85115 0.85753 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -6.56 9.03 71.98 0.65 -5.91 16 2 C 0.25 11.33 1.83 44.24 0.08 11.42 16 3 H 0.04 1.64 4.97 -2.38 -0.01 1.63 16 4 C -0.61 -33.78 9.09 25.60 0.23 -33.55 16 5 H 0.03 1.62 7.95 -2.91 -0.02 1.60 16 6 C -0.02 -0.98 5.42 84.66 0.46 -0.52 16 7 N -0.94 -58.10 13.70 21.45 0.29 -57.80 16 8 Si 1.09 49.06 25.36 68.60 1.74 50.80 16 9 H -0.26 -10.66 6.77 99.48 0.67 -9.98 16 10 H -0.25 -10.17 6.38 99.48 0.63 -9.54 16 11 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 12 N -0.73 -29.96 5.25 -322.33 -1.69 -31.65 16 13 C 0.21 7.67 6.64 38.13 0.25 7.92 16 14 C -0.21 -7.44 8.87 22.38 0.20 -7.24 16 15 C -0.05 -1.43 9.96 22.38 0.22 -1.20 16 16 C 0.00 -0.01 4.87 38.13 0.19 0.17 16 17 N -0.48 -11.44 5.28 -682.56 -3.61 -15.05 16 18 C 0.03 0.65 6.43 86.65 0.56 1.20 16 19 C -0.12 -1.62 7.06 31.80 0.22 -1.40 16 20 C -0.13 -1.77 6.93 31.47 0.22 -1.55 16 21 C 0.03 0.63 6.49 86.44 0.56 1.19 16 22 C -0.09 -2.55 7.90 22.39 0.18 -2.37 16 23 C -0.20 -6.38 9.89 22.38 0.22 -6.16 16 24 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 25 H 0.05 2.04 7.83 -2.38 -0.02 2.02 16 26 H 0.05 2.08 4.45 -2.39 -0.01 2.07 16 27 H 0.25 15.90 8.72 -92.71 -0.81 15.09 16 28 H 0.39 15.76 8.54 -92.70 -0.79 14.97 16 29 H 0.12 4.22 6.21 -2.91 -0.02 4.21 16 30 H 0.13 3.64 8.06 -2.91 -0.02 3.61 16 31 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.05 0.89 7.00 -2.39 -0.02 0.87 16 33 H 0.09 0.92 8.14 -2.38 -0.02 0.90 16 34 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 35 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 36 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.04 0.92 6.33 -2.39 -0.02 0.90 16 38 H 0.07 1.51 8.14 -2.38 -0.02 1.49 16 39 H 0.13 2.99 7.04 -2.91 -0.02 2.97 16 40 H 0.12 3.53 8.06 -2.91 -0.02 3.50 16 Total: -1.00 -62.63 312.40 1.07 -61.56 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.10 Total: 30.14 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 4.24 Total: -37.99 kcal Atomic # 7 Polarization: -99.49 SS G_CDS: -5.00 Total: -104.50 kcal Atomic # 14 Polarization: 49.06 SS G_CDS: 1.74 Total: 50.80 kcal Total: -62.63 1.07 -61.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062996124.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.853 kcal (2) G-P(sol) polarization free energy of solvation -62.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.223 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.074 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.297 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds