Wall clock time and date at job start Mon Mar 30 2020 07:38:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29493 * 1 3 3 Si 1.86799 * 120.00387 * 2 1 4 4 H 1.48498 * 109.47224 * 89.99406 * 3 2 1 5 5 H 1.48495 * 109.47442 * 209.99701 * 3 2 1 6 6 H 1.48504 * 109.47054 * 329.99555 * 3 2 1 7 7 C 1.46549 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99500 * 16.18421 * 7 2 1 9 9 C 1.40336 * 120.00339 * 196.18057 * 7 2 1 10 10 C 1.41294 * 120.29108 * 27.40825 * 9 7 2 11 11 C 1.36484 * 119.69181 * 179.78536 * 10 9 7 12 12 C 1.38824 * 120.29683 * 0.46991 * 11 10 9 13 13 N 1.48012 * 119.69990 * 179.75832 * 12 11 10 14 14 O 1.31696 * 120.00137 * 180.02562 * 13 12 11 15 15 O 1.31701 * 119.99911 * 0.02562 * 13 12 11 16 16 C 1.38768 * 120.60036 * 359.78499 * 12 11 10 17 17 C 1.36523 * 120.29902 * 359.97242 * 16 12 11 18 18 C 1.50705 * 120.15446 * 179.97438 * 17 16 12 19 19 F 1.39904 * 109.47063 * 0.02562 * 18 17 16 20 20 F 1.39901 * 109.47110 * 120.02302 * 18 17 16 21 21 F 1.39898 * 109.47225 * 240.02423 * 18 17 16 22 22 H 0.97003 * 120.00454 * 175.34835 * 1 2 3 23 23 H 1.07996 * 120.15364 * 0.02562 * 10 9 7 24 24 H 1.07996 * 119.85160 * 180.22754 * 11 10 9 25 25 H 1.08005 * 119.85236 * 179.97438 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 2.4764 2.0464 1.4000 5 1 3.5266 1.4401 -0.6999 6 1 1.4266 2.6526 -0.7002 7 6 2.0277 -1.2691 0.0006 8 1 1.5198 -2.1860 -0.2597 9 6 3.3894 -1.2931 0.3392 10 6 3.9268 -0.3108 1.2011 11 6 5.2519 -0.3483 1.5259 12 6 6.0727 -1.3398 1.0058 13 7 7.5089 -1.3648 1.3626 14 8 8.2930 -2.3024 0.8723 15 8 8.0028 -0.4494 2.1704 16 6 5.5589 -2.3074 0.1541 17 6 4.2360 -2.2960 -0.1831 18 6 3.6816 -3.3480 -1.1089 19 9 4.7062 -4.2216 -1.4888 20 9 2.6770 -4.0657 -0.4508 21 9 3.1470 -2.7335 -2.2463 22 1 -0.4851 -0.8373 -0.0681 23 1 3.2912 0.4637 1.6040 24 1 5.6646 0.3990 2.1873 25 1 6.2085 -3.0730 -0.2439 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063046482.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:10 Heat of formation + Delta-G solvation = -134.179661 kcal Electronic energy + Delta-G solvation = -19577.012906 eV Core-core repulsion = 15722.902266 eV Total energy + Delta-G solvation = -3854.110640 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.040 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.60759 -47.16250 -47.00229 -39.11980 -37.27530 -34.68965 -33.31218 -31.74747 -31.32517 -27.35679 -25.60361 -23.62462 -22.25822 -20.87461 -19.34538 -18.30374 -17.94347 -17.90869 -16.94475 -16.01386 -15.41422 -15.09484 -14.85924 -14.70592 -14.05023 -13.92323 -13.64566 -13.49650 -13.23148 -13.21578 -13.04880 -12.28001 -12.18724 -11.90058 -11.45822 -11.08843 -10.69890 -10.35372 -10.25463 -10.06885 -9.88360 -9.76902 -8.97009 -8.84575 -8.37866 -5.74877 0.38999 1.73284 2.04539 2.36684 2.62989 2.79209 3.00681 3.25957 3.31613 3.55549 4.24462 4.39605 4.66506 5.06545 5.23932 5.49315 5.73311 5.81859 6.14675 6.15009 6.24599 6.46660 6.64800 6.79957 6.89730 7.24060 7.29785 7.53471 7.94759 8.77325 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.010493 C = 0.006995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.919282 B = 2667.730391 C = 4002.011705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.711 5.711 2 C 0.031 3.969 3 Si 1.071 2.929 4 H -0.259 1.259 5 H -0.248 1.248 6 H -0.272 1.272 7 C -0.389 4.389 8 H 0.107 0.893 9 C 0.099 3.901 10 C -0.218 4.218 11 C -0.006 4.006 12 C -0.141 4.141 13 N 0.038 4.962 14 O -0.277 6.277 15 O -0.274 6.274 16 C 0.049 3.951 17 C -0.284 4.284 18 C 0.525 3.475 19 F -0.189 7.189 20 F -0.184 7.184 21 F -0.178 7.178 22 H 0.308 0.692 23 H 0.131 0.869 24 H 0.133 0.867 25 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.075 0.116 -1.939 3.637 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.326 5.326 2 C -0.202 4.202 3 Si 0.892 3.108 4 H -0.185 1.185 5 H -0.171 1.171 6 H -0.198 1.198 7 C -0.413 4.413 8 H 0.125 0.875 9 C 0.094 3.906 10 C -0.238 4.238 11 C -0.025 4.025 12 C -0.239 4.239 13 N 0.479 4.521 14 O -0.445 6.445 15 O -0.442 6.442 16 C 0.029 3.971 17 C -0.288 4.288 18 C 0.471 3.529 19 F -0.170 7.170 20 F -0.165 7.165 21 F -0.159 7.159 22 H 0.122 0.878 23 H 0.148 0.852 24 H 0.151 0.849 25 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -3.764 1.627 -2.007 4.565 hybrid contribution 0.257 -2.114 -0.025 2.130 sum -3.507 -0.488 -2.031 4.082 Atomic orbital electron populations 1.69999 1.08716 1.35356 1.18536 1.29541 0.95303 1.05211 0.90188 0.83632 0.76382 0.71216 0.79603 1.18484 1.17139 1.19795 1.23103 0.94002 0.97281 1.26871 0.87497 1.17342 0.92538 0.90563 0.90120 1.20848 0.94573 1.03589 1.04786 1.20231 0.92525 0.94503 0.95286 1.19436 0.78357 1.08395 1.17672 1.50041 1.04166 0.99695 0.98185 1.96154 1.58175 1.30167 1.59993 1.96144 1.80549 1.32644 1.34909 1.20011 0.93957 0.93784 0.89353 1.19275 0.94364 1.04443 1.10764 1.17980 0.75083 0.80402 0.79388 1.93111 1.59841 1.71886 1.92175 1.93141 1.62497 1.79874 1.81037 1.93173 1.86842 1.82850 1.53075 0.87802 0.85199 0.84927 0.84324 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -13.74 13.58 55.99 0.76 -12.98 15 2 C 0.03 0.60 5.61 -15.19 -0.09 0.51 15 3 Si 1.07 17.85 24.97 -169.99 -4.24 13.60 15 4 H -0.26 -3.98 6.53 56.52 0.37 -3.61 15 5 H -0.25 -4.23 6.95 56.52 0.39 -3.84 15 6 H -0.27 -4.40 7.11 56.52 0.40 -4.00 15 7 C -0.39 -7.84 8.48 -35.44 -0.30 -8.14 15 8 H 0.11 2.20 6.28 -52.48 -0.33 1.87 15 9 C 0.10 2.02 5.24 -106.80 -0.56 1.46 15 10 C -0.22 -4.22 7.29 -39.05 -0.28 -4.50 15 11 C -0.01 -0.12 9.51 -40.00 -0.38 -0.50 15 12 C -0.14 -3.06 6.91 -79.54 -0.55 -3.61 15 13 N 0.04 0.89 4.98 34.16 0.17 1.06 15 14 O -0.28 -6.75 19.13 -31.57 -0.60 -7.35 15 15 O -0.27 -6.58 19.13 -31.57 -0.60 -7.19 15 16 C 0.05 1.01 8.91 -40.00 -0.36 0.65 15 17 C -0.28 -5.77 5.40 -104.09 -0.56 -6.33 15 18 C 0.53 10.01 2.83 36.01 0.10 10.11 15 19 F -0.19 -3.42 15.96 2.25 0.04 -3.39 15 20 F -0.18 -3.49 15.69 2.25 0.04 -3.45 15 21 F -0.18 -3.41 16.54 2.25 0.04 -3.37 15 22 H 0.31 5.66 8.74 -40.82 -0.36 5.30 15 23 H 0.13 2.28 4.22 -52.49 -0.22 2.06 15 24 H 0.13 2.40 7.56 -52.49 -0.40 2.00 15 25 H 0.14 2.73 6.62 -52.48 -0.35 2.39 15 LS Contribution 244.17 15.07 3.68 3.68 Total: -1.00 -23.35 244.17 -4.20 -27.55 By element: Atomic # 1 Polarization: 2.67 SS G_CDS: -0.49 Total: 2.18 kcal Atomic # 6 Polarization: -7.38 SS G_CDS: -2.98 Total: -10.35 kcal Atomic # 7 Polarization: -12.84 SS G_CDS: 0.93 Total: -11.91 kcal Atomic # 8 Polarization: -13.33 SS G_CDS: -1.21 Total: -14.54 kcal Atomic # 9 Polarization: -10.32 SS G_CDS: 0.11 Total: -10.21 kcal Atomic # 14 Polarization: 17.85 SS G_CDS: -4.24 Total: 13.60 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -23.35 -4.20 -27.55 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063046482.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.627 kcal (2) G-P(sol) polarization free energy of solvation -23.354 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.198 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.553 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds