Wall clock time and date at job start Mon Mar 30 2020 07:38:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.29493 * 1 3 3 Si 1.86799 * 120.00387 * 2 1 4 4 H 1.48498 * 109.47224 * 89.99406 * 3 2 1 5 5 H 1.48495 * 109.47442 * 209.99701 * 3 2 1 6 6 H 1.48504 * 109.47054 * 329.99555 * 3 2 1 7 7 C 1.46549 * 120.00224 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99500 * 16.18421 * 7 2 1 9 9 C 1.40336 * 120.00339 * 196.18057 * 7 2 1 10 10 C 1.41294 * 120.29108 * 27.40825 * 9 7 2 11 11 C 1.36484 * 119.69181 * 179.78536 * 10 9 7 12 12 C 1.38824 * 120.29683 * 0.46991 * 11 10 9 13 13 N 1.48012 * 119.69990 * 179.75832 * 12 11 10 14 14 O 1.31696 * 120.00137 * 180.02562 * 13 12 11 15 15 O 1.31701 * 119.99911 * 0.02562 * 13 12 11 16 16 C 1.38768 * 120.60036 * 359.78499 * 12 11 10 17 17 C 1.36523 * 120.29902 * 359.97242 * 16 12 11 18 18 C 1.50705 * 120.15446 * 179.97438 * 17 16 12 19 19 F 1.39904 * 109.47063 * 0.02562 * 18 17 16 20 20 F 1.39901 * 109.47110 * 120.02302 * 18 17 16 21 21 F 1.39898 * 109.47225 * 240.02423 * 18 17 16 22 22 H 0.97003 * 120.00454 * 175.34835 * 1 2 3 23 23 H 1.07996 * 120.15364 * 0.02562 * 10 9 7 24 24 H 1.07996 * 119.85160 * 180.22754 * 11 10 9 25 25 H 1.08005 * 119.85236 * 179.97438 * 16 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.2949 0.0000 0.0000 3 14 2.2290 1.6177 0.0000 4 1 2.4764 2.0464 1.4000 5 1 3.5266 1.4401 -0.6999 6 1 1.4266 2.6526 -0.7002 7 6 2.0277 -1.2691 0.0006 8 1 1.5198 -2.1860 -0.2597 9 6 3.3894 -1.2931 0.3392 10 6 3.9268 -0.3108 1.2011 11 6 5.2519 -0.3483 1.5259 12 6 6.0727 -1.3398 1.0058 13 7 7.5089 -1.3648 1.3626 14 8 8.2930 -2.3024 0.8723 15 8 8.0028 -0.4494 2.1704 16 6 5.5589 -2.3074 0.1541 17 6 4.2360 -2.2960 -0.1831 18 6 3.6816 -3.3480 -1.1089 19 9 4.7062 -4.2216 -1.4888 20 9 2.6770 -4.0657 -0.4508 21 9 3.1470 -2.7335 -2.2463 22 1 -0.4851 -0.8373 -0.0681 23 1 3.2912 0.4637 1.6040 24 1 5.6646 0.3990 2.1873 25 1 6.2085 -3.0730 -0.2439 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063046482.mol2 25 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:09 Heat of formation + Delta-G solvation = -145.242963 kcal Electronic energy + Delta-G solvation = -19577.492647 eV Core-core repulsion = 15722.902266 eV Total energy + Delta-G solvation = -3854.590381 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 261.040 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -51.14516 -48.68206 -48.55221 -40.74079 -38.95193 -36.27743 -35.03782 -33.35998 -32.92509 -29.02436 -27.20403 -25.25708 -23.82882 -22.46823 -20.91780 -19.93178 -19.49239 -19.45187 -18.63331 -17.61304 -17.01066 -16.65404 -16.52935 -16.20451 -15.58825 -15.44162 -15.17209 -15.02397 -14.76686 -14.73177 -14.55338 -13.84781 -13.73266 -13.46412 -12.91626 -12.61328 -12.17702 -12.01077 -11.81513 -11.77840 -11.59098 -11.27729 -10.57576 -10.42050 -9.95608 -7.38210 -1.39118 0.17404 0.42432 0.71175 1.28206 1.43944 1.72230 1.75052 1.91082 2.08230 2.66145 2.81430 3.11358 3.50668 3.67239 3.96846 4.12642 4.23203 4.51533 4.56066 4.66395 4.87104 5.05733 5.21652 5.23989 5.62976 5.65317 5.91981 6.20561 7.22697 Molecular weight = 261.04amu Principal moments of inertia in cm(-1) A = 0.017060 B = 0.010493 C = 0.006995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1640.919282 B = 2667.730391 C = 4002.011705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.707 5.707 2 C 0.016 3.984 3 Si 1.081 2.919 4 H -0.232 1.232 5 H -0.254 1.254 6 H -0.263 1.263 7 C -0.366 4.366 8 H 0.103 0.897 9 C 0.075 3.925 10 C -0.204 4.204 11 C -0.015 4.015 12 C -0.144 4.144 13 N 0.041 4.959 14 O -0.328 6.328 15 O -0.309 6.309 16 C 0.044 3.956 17 C -0.280 4.280 18 C 0.529 3.471 19 F -0.183 7.183 20 F -0.182 7.182 21 F -0.177 7.177 22 H 0.312 0.688 23 H 0.153 0.847 24 H 0.149 0.851 25 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.198 1.026 -2.086 5.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.322 5.322 2 C -0.217 4.217 3 Si 0.897 3.103 4 H -0.156 1.156 5 H -0.178 1.178 6 H -0.188 1.188 7 C -0.390 4.390 8 H 0.121 0.879 9 C 0.071 3.929 10 C -0.224 4.224 11 C -0.035 4.035 12 C -0.245 4.245 13 N 0.466 4.534 14 O -0.483 6.483 15 O -0.468 6.468 16 C 0.024 3.976 17 C -0.285 4.285 18 C 0.475 3.525 19 F -0.164 7.164 20 F -0.163 7.163 21 F -0.159 7.159 22 H 0.126 0.874 23 H 0.170 0.830 24 H 0.167 0.833 25 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.768 2.498 -2.125 6.635 hybrid contribution 0.389 -2.403 -0.118 2.437 sum -5.379 0.095 -2.243 5.829 Atomic orbital electron populations 1.70011 1.08888 1.35823 1.17485 1.30250 0.95356 1.06125 0.89974 0.83552 0.75624 0.69746 0.81330 1.15600 1.17832 1.18788 1.23367 0.93918 0.97765 1.23977 0.87944 1.17550 0.92750 0.91430 0.91212 1.21084 0.94453 1.03218 1.03620 1.20413 0.92529 0.94641 0.95873 1.19784 0.77678 1.09141 1.17909 1.50172 1.04762 0.99745 0.98673 1.96123 1.58963 1.31362 1.61821 1.96102 1.81039 1.33384 1.36314 1.20088 0.94230 0.93873 0.89412 1.19450 0.94244 1.04387 1.10402 1.17836 0.75184 0.80300 0.79207 1.93128 1.59586 1.71614 1.92080 1.93146 1.62397 1.79776 1.81030 1.93175 1.86829 1.82889 1.52990 0.87353 0.82969 0.83306 0.84020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.71 -24.88 13.58 23.21 0.32 -24.56 15 2 C 0.02 0.54 5.61 87.21 0.49 1.03 15 3 Si 1.08 31.68 24.97 68.60 1.71 33.39 15 4 H -0.23 -5.90 6.53 99.48 0.65 -5.25 15 5 H -0.25 -7.84 6.95 99.48 0.69 -7.15 15 6 H -0.26 -7.41 7.11 99.48 0.71 -6.70 15 7 C -0.37 -13.65 8.48 24.95 0.21 -13.43 15 8 H 0.10 3.92 6.28 -2.91 -0.02 3.90 15 9 C 0.08 2.87 5.24 -21.27 -0.11 2.76 15 10 C -0.20 -7.27 7.29 22.61 0.16 -7.11 15 11 C -0.02 -0.57 9.51 22.00 0.21 -0.36 15 12 C -0.14 -6.17 6.91 36.64 0.25 -5.91 15 13 N 0.04 2.00 4.98 -45.83 -0.23 1.77 15 14 O -0.33 -16.57 19.13 3.52 0.07 -16.51 15 15 O -0.31 -15.20 19.13 3.51 0.07 -15.13 15 16 C 0.04 1.77 8.91 22.00 0.20 1.97 15 17 C -0.28 -10.88 5.40 -19.52 -0.11 -10.99 15 18 C 0.53 19.17 2.83 71.24 0.20 19.37 15 19 F -0.18 -6.36 15.96 44.97 0.72 -5.65 15 20 F -0.18 -6.53 15.69 44.97 0.71 -5.82 15 21 F -0.18 -6.43 16.54 44.97 0.74 -5.68 15 22 H 0.31 10.49 8.74 -92.71 -0.81 9.68 15 23 H 0.15 4.70 4.22 -2.91 -0.01 4.69 15 24 H 0.15 5.11 7.56 -2.91 -0.02 5.09 15 25 H 0.14 5.59 6.62 -2.91 -0.02 5.57 15 Total: -1.00 -47.82 244.17 6.78 -41.04 By element: Atomic # 1 Polarization: 8.66 SS G_CDS: 1.17 Total: 9.83 kcal Atomic # 6 Polarization: -14.19 SS G_CDS: 1.51 Total: -12.68 kcal Atomic # 7 Polarization: -22.88 SS G_CDS: 0.09 Total: -22.79 kcal Atomic # 8 Polarization: -31.77 SS G_CDS: 0.13 Total: -31.63 kcal Atomic # 9 Polarization: -19.32 SS G_CDS: 2.17 Total: -17.15 kcal Atomic # 14 Polarization: 31.68 SS G_CDS: 1.71 Total: 33.39 kcal Total: -47.82 6.78 -41.04 kcal The number of atoms in the molecule is 25 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063046482.mol2 25 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.203 kcal (2) G-P(sol) polarization free energy of solvation -47.817 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.040 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds