Wall clock time and date at job start Mon Mar 30 2020 07:38:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31107 * 1 3 3 Si 1.86800 * 119.99824 * 2 1 4 4 H 1.48506 * 109.47149 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47271 * 119.99948 * 3 2 1 6 6 H 1.48494 * 109.47779 * 239.99891 * 3 2 1 7 7 C 1.39543 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00286 * 2.89005 * 7 2 1 9 9 C 1.41156 * 120.00055 * 182.88715 * 7 2 1 10 10 C 1.38031 * 122.76127 * 186.63694 * 9 7 2 11 11 S 1.70983 * 108.93806 * 180.02562 * 10 9 7 12 12 C 1.75914 * 90.79010 * 0.02562 * 11 10 9 13 13 C 1.46974 * 125.07652 * 180.02562 * 12 11 10 14 14 C 1.34802 * 125.80528 * 359.68638 * 13 12 11 15 15 N 1.37985 * 107.56228 * 179.90575 * 14 13 12 16 16 C 1.37363 * 145.17917 * 179.97438 * 15 14 13 17 17 C 1.34610 * 106.89489 * 180.36616 * 16 15 14 18 18 N 1.34218 * 108.35176 * 359.97438 * 17 16 15 19 19 C 1.31459 * 109.36873 * 0.02562 * 18 17 16 20 20 O 1.35106 * 144.04444 * 179.97438 * 19 18 17 21 21 N 1.30159 * 109.84713 * 359.73223 * 12 11 10 22 22 H 0.97002 * 119.99794 * 174.80746 * 1 2 3 23 23 H 1.08007 * 125.53025 * 0.02562 * 10 9 7 24 24 H 1.07992 * 126.21720 * 0.02562 * 14 13 12 25 25 H 1.08005 * 126.55316 * 0.33540 * 16 15 14 26 26 H 1.08004 * 125.82306 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3111 0.0000 0.0000 3 14 2.2450 1.6178 0.0000 4 1 1.2800 2.7465 0.0006 5 1 3.0988 1.6965 1.2125 6 1 3.0988 1.6966 -1.2124 7 6 2.0089 -1.2084 -0.0005 8 1 1.4700 -2.1432 -0.0481 9 6 3.4191 -1.2092 0.0610 10 6 4.1719 -2.3587 -0.0699 11 16 5.8282 -1.9552 0.0608 12 6 5.4222 -0.2585 0.2860 13 6 6.3964 0.8241 0.4834 14 6 7.7361 0.6812 0.5273 15 7 8.2821 1.9328 0.7257 16 6 9.4477 2.6432 0.8793 17 6 9.1005 3.9327 1.0484 18 7 7.7620 4.0197 1.0007 19 6 7.2539 2.8228 0.8069 20 8 6.1005 2.1355 0.6573 21 7 4.1304 -0.1041 0.2455 22 1 -0.4850 -0.8366 -0.0760 23 1 3.7784 -3.3519 -0.2291 24 1 8.2828 -0.2444 0.4240 25 1 10.4510 2.2434 0.8673 26 1 9.7827 4.7568 1.1964 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000076053766.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:50 Heat of formation + Delta-G solvation = 130.347272 kcal Electronic energy + Delta-G solvation = -16349.595992 eV Core-core repulsion = 13523.858463 eV Total energy + Delta-G solvation = -2825.737529 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.031 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -43.93518 -39.94196 -38.54503 -34.45940 -33.62906 -31.25172 -29.45418 -28.53361 -26.18960 -24.38905 -22.48839 -21.84462 -21.18580 -19.46383 -18.52065 -17.22520 -17.18679 -16.65800 -16.23640 -15.67297 -14.17504 -14.08744 -13.90047 -13.57110 -13.43418 -13.22987 -13.14839 -12.49360 -12.14312 -11.68295 -11.02898 -10.85277 -10.43012 -10.20797 -9.73715 -9.54605 -9.02318 -8.62240 -8.39426 -8.35312 -7.70182 -7.35910 -4.77759 0.59663 1.42942 1.87479 2.29756 2.31608 2.58285 2.92217 2.92852 3.34986 3.53841 3.88740 3.95784 4.02564 4.28300 4.49505 4.80675 4.90540 5.11134 5.28220 5.35931 5.69015 5.92999 6.09763 6.56443 6.62557 6.78451 7.16987 7.41343 7.74379 7.82215 7.90877 8.48264 8.72274 9.97666 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.026078 B = 0.007370 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.459314 B = 3798.299546 C = 4853.877815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.811 5.811 2 C 0.045 3.955 3 Si 1.116 2.884 4 H -0.311 1.311 5 H -0.270 1.270 6 H -0.286 1.286 7 C -0.470 4.470 8 H 0.087 0.913 9 C 0.211 3.789 10 C -0.438 4.438 11 S 0.114 5.886 12 C 0.084 3.916 13 C 0.130 3.870 14 C -0.030 4.030 15 N -0.423 5.423 16 C -0.070 4.070 17 C 0.025 3.975 18 N -0.467 5.467 19 C 0.343 3.657 20 O -0.148 6.148 21 N -0.450 5.450 22 H 0.284 0.716 23 H 0.155 0.845 24 H 0.203 0.797 25 H 0.184 0.816 26 H 0.192 0.808 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.811 0.601 0.775 16.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.433 5.433 2 C -0.176 4.176 3 Si 0.947 3.053 4 H -0.241 1.241 5 H -0.197 1.197 6 H -0.213 1.213 7 C -0.504 4.504 8 H 0.105 0.895 9 C 0.088 3.912 10 C -0.578 4.578 11 S 0.364 5.636 12 C -0.189 4.189 13 C 0.076 3.924 14 C -0.151 4.151 15 N -0.108 5.108 16 C -0.198 4.198 17 C -0.122 4.122 18 N -0.202 5.202 19 C 0.049 3.951 20 O -0.041 6.041 21 N -0.171 5.171 22 H 0.095 0.905 23 H 0.172 0.828 24 H 0.219 0.781 25 H 0.201 0.799 26 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges 16.482 2.713 0.915 16.729 hybrid contribution -0.485 -2.776 -0.216 2.826 sum 15.997 -0.063 0.698 16.012 Atomic orbital electron populations 1.70750 1.07755 1.32690 1.32103 1.27480 0.95575 1.05310 0.89212 0.82538 0.72040 0.70876 0.79847 1.24134 1.19676 1.21291 1.20077 0.88547 0.96559 1.45267 0.89499 1.17918 0.95206 0.84021 0.94054 1.25494 0.92946 1.03435 1.35943 1.82404 1.10236 0.99330 1.71605 1.23663 0.91794 0.93320 1.10161 1.19013 0.90438 0.80250 1.02734 1.21928 0.91048 0.89155 1.13014 1.44210 1.09407 1.07556 1.49661 1.22114 0.89028 0.91683 1.16989 1.22489 0.89787 0.95586 1.04371 1.70416 1.08728 1.14849 1.26205 1.22538 0.78430 0.87976 1.06113 1.84883 1.24844 1.17104 1.77259 1.66356 1.03048 1.31774 1.15956 0.90503 0.82768 0.78067 0.79866 0.79098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -22.42 13.67 55.53 0.76 -21.66 15 2 C 0.04 1.23 5.51 -17.37 -0.10 1.14 15 3 Si 1.12 28.60 25.68 -169.99 -4.37 24.24 15 4 H -0.31 -7.82 7.11 56.52 0.40 -7.42 15 5 H -0.27 -6.99 6.73 56.52 0.38 -6.60 15 6 H -0.29 -7.33 7.11 56.52 0.40 -6.93 15 7 C -0.47 -12.79 9.66 -37.99 -0.37 -13.16 15 8 H 0.09 2.36 8.05 -52.49 -0.42 1.93 15 9 C 0.21 5.36 6.25 -86.45 -0.54 4.82 15 10 C -0.44 -9.62 10.99 30.66 0.34 -9.29 15 11 S 0.11 2.01 22.87 -107.50 -2.46 -0.45 15 12 C 0.08 1.75 7.42 -14.72 -0.11 1.64 15 13 C 0.13 2.40 7.19 -37.26 -0.27 2.13 15 14 C -0.03 -0.42 11.64 -16.00 -0.19 -0.61 15 15 N -0.42 -6.26 3.53 -64.39 -0.23 -6.49 15 16 C -0.07 -0.79 12.05 -16.36 -0.20 -0.98 15 17 C 0.02 0.30 11.85 -17.79 -0.21 0.09 15 18 N -0.47 -7.95 11.29 -14.63 -0.17 -8.12 15 19 C 0.34 6.25 9.76 -88.48 -0.86 5.39 15 20 O -0.15 -3.05 10.79 -0.15 0.00 -3.05 15 21 N -0.45 -11.19 5.32 -9.34 -0.05 -11.24 15 22 H 0.28 7.47 8.73 -40.82 -0.36 7.11 15 23 H 0.15 3.19 8.06 -52.48 -0.42 2.77 15 24 H 0.20 2.03 8.06 -52.49 -0.42 1.61 15 25 H 0.18 1.27 8.06 -52.48 -0.42 0.85 15 26 H 0.19 1.47 8.06 -52.48 -0.42 1.04 15 LS Contribution 255.43 15.07 3.85 3.85 Total: -1.00 -30.95 255.43 -6.45 -37.40 By element: Atomic # 1 Polarization: -4.35 SS G_CDS: -1.29 Total: -5.64 kcal Atomic # 6 Polarization: -6.34 SS G_CDS: -2.50 Total: -8.84 kcal Atomic # 7 Polarization: -47.83 SS G_CDS: 0.32 Total: -47.51 kcal Atomic # 8 Polarization: -3.05 SS G_CDS: 0.00 Total: -3.05 kcal Atomic # 14 Polarization: 28.60 SS G_CDS: -4.37 Total: 24.24 kcal Atomic # 16 Polarization: 2.01 SS G_CDS: -2.46 Total: -0.45 kcal Total LS contribution 3.85 Total: 3.85 kcal Total: -30.95 -6.45 -37.40 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076053766.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.746 kcal (2) G-P(sol) polarization free energy of solvation -30.951 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 136.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.448 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.399 kcal (6) G-S(sol) free energy of system = (1) + (5) 130.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds