Wall clock time and date at job start Mon Mar 30 2020 07:38:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31107 * 1 3 3 Si 1.86800 * 119.99824 * 2 1 4 4 H 1.48506 * 109.47149 * 0.02562 * 3 2 1 5 5 H 1.48504 * 109.47271 * 119.99948 * 3 2 1 6 6 H 1.48494 * 109.47779 * 239.99891 * 3 2 1 7 7 C 1.39543 * 120.00342 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00286 * 2.89005 * 7 2 1 9 9 C 1.41156 * 120.00055 * 182.88715 * 7 2 1 10 10 C 1.38031 * 122.76127 * 186.63694 * 9 7 2 11 11 S 1.70983 * 108.93806 * 180.02562 * 10 9 7 12 12 C 1.75914 * 90.79010 * 0.02562 * 11 10 9 13 13 C 1.46974 * 125.07652 * 180.02562 * 12 11 10 14 14 C 1.34802 * 125.80528 * 359.68638 * 13 12 11 15 15 N 1.37985 * 107.56228 * 179.90575 * 14 13 12 16 16 C 1.37363 * 145.17917 * 179.97438 * 15 14 13 17 17 C 1.34610 * 106.89489 * 180.36616 * 16 15 14 18 18 N 1.34218 * 108.35176 * 359.97438 * 17 16 15 19 19 C 1.31459 * 109.36873 * 0.02562 * 18 17 16 20 20 O 1.35106 * 144.04444 * 179.97438 * 19 18 17 21 21 N 1.30159 * 109.84713 * 359.73223 * 12 11 10 22 22 H 0.97002 * 119.99794 * 174.80746 * 1 2 3 23 23 H 1.08007 * 125.53025 * 0.02562 * 10 9 7 24 24 H 1.07992 * 126.21720 * 0.02562 * 14 13 12 25 25 H 1.08005 * 126.55316 * 0.33540 * 16 15 14 26 26 H 1.08004 * 125.82306 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3111 0.0000 0.0000 3 14 2.2450 1.6178 0.0000 4 1 1.2800 2.7465 0.0006 5 1 3.0988 1.6965 1.2125 6 1 3.0988 1.6966 -1.2124 7 6 2.0089 -1.2084 -0.0005 8 1 1.4700 -2.1432 -0.0481 9 6 3.4191 -1.2092 0.0610 10 6 4.1719 -2.3587 -0.0699 11 16 5.8282 -1.9552 0.0608 12 6 5.4222 -0.2585 0.2860 13 6 6.3964 0.8241 0.4834 14 6 7.7361 0.6812 0.5273 15 7 8.2821 1.9328 0.7257 16 6 9.4477 2.6432 0.8793 17 6 9.1005 3.9327 1.0484 18 7 7.7620 4.0197 1.0007 19 6 7.2539 2.8228 0.8069 20 8 6.1005 2.1355 0.6573 21 7 4.1304 -0.1041 0.2455 22 1 -0.4850 -0.8366 -0.0760 23 1 3.7784 -3.3519 -0.2291 24 1 8.2828 -0.2444 0.4240 25 1 10.4510 2.2434 0.8673 26 1 9.7827 4.7568 1.1964 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076053766.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:38:46 Heat of formation + Delta-G solvation = 107.785377 kcal Electronic energy + Delta-G solvation = -16350.574349 eV Core-core repulsion = 13523.858463 eV Total energy + Delta-G solvation = -2826.715886 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 261.031 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -45.09548 -41.15450 -40.25283 -35.72761 -35.49769 -32.78116 -30.63145 -29.93939 -28.05524 -25.79399 -23.73052 -23.03936 -22.52856 -21.28856 -20.21398 -18.55478 -18.45785 -18.07404 -17.47654 -17.24623 -15.85958 -15.61140 -15.12107 -14.95526 -14.85569 -14.79684 -14.40418 -14.16451 -13.91629 -13.03546 -12.85975 -12.69774 -12.21233 -11.74183 -11.45857 -11.31589 -10.63040 -10.17181 -10.14038 -9.46851 -9.39857 -9.18900 -6.73559 -0.80281 0.02025 0.53814 1.01596 1.03717 1.21937 1.37176 1.42265 1.48266 1.88363 1.89302 2.05952 2.25695 2.69501 3.10513 3.44112 3.68691 3.80355 4.10485 4.44985 4.49382 4.75948 4.86249 4.93952 5.02068 5.39477 5.66476 5.88372 5.96310 6.04326 6.56974 6.68476 6.96970 7.97345 Molecular weight = 261.03amu Principal moments of inertia in cm(-1) A = 0.026078 B = 0.007370 C = 0.005767 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1073.459314 B = 3798.299546 C = 4853.877815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.020 3.980 3 Si 1.154 2.846 4 H -0.315 1.315 5 H -0.282 1.282 6 H -0.294 1.294 7 C -0.511 4.511 8 H 0.071 0.929 9 C 0.191 3.809 10 C -0.440 4.440 11 S 0.261 5.739 12 C 0.073 3.927 13 C 0.070 3.930 14 C 0.033 3.967 15 N -0.425 5.425 16 C -0.043 4.043 17 C 0.015 3.985 18 N -0.501 5.501 19 C 0.299 3.701 20 O -0.191 6.191 21 N -0.511 5.511 22 H 0.281 0.719 23 H 0.166 0.834 24 H 0.253 0.747 25 H 0.239 0.761 26 H 0.233 0.767 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.465 -0.427 0.868 22.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.473 5.473 2 C -0.195 4.195 3 Si 0.986 3.014 4 H -0.246 1.246 5 H -0.210 1.210 6 H -0.222 1.222 7 C -0.546 4.546 8 H 0.089 0.911 9 C 0.066 3.934 10 C -0.580 4.580 11 S 0.513 5.487 12 C -0.198 4.198 13 C 0.017 3.983 14 C -0.089 4.089 15 N -0.112 5.112 16 C -0.170 4.170 17 C -0.130 4.130 18 N -0.237 5.237 19 C 0.007 3.993 20 O -0.086 6.086 21 N -0.234 5.234 22 H 0.092 0.908 23 H 0.184 0.816 24 H 0.269 0.731 25 H 0.255 0.745 26 H 0.249 0.751 Dipole moment (debyes) X Y Z Total from point charges 22.199 1.675 1.008 22.285 hybrid contribution -1.643 -2.536 -0.217 3.030 sum 20.556 -0.862 0.791 20.589 Atomic orbital electron populations 1.70758 1.08022 1.32484 1.36012 1.27874 0.95826 1.06572 0.89202 0.81931 0.70802 0.69773 0.78844 1.24584 1.20986 1.22243 1.20005 0.90084 0.95746 1.48768 0.91069 1.17995 0.95070 0.85647 0.94689 1.26106 0.96928 1.03270 1.31693 1.81694 1.04506 0.94827 1.67643 1.24284 0.91295 0.96313 1.07952 1.19091 0.91645 0.79608 1.07950 1.22595 0.89475 0.90188 1.06662 1.44549 1.09787 1.07299 1.49592 1.23128 0.89739 0.90943 1.13143 1.23354 0.88273 0.97682 1.03658 1.70338 1.11432 1.15504 1.26422 1.22719 0.78648 0.89115 1.08831 1.84763 1.26918 1.18399 1.78547 1.66174 1.05092 1.32137 1.19992 0.90809 0.81621 0.73084 0.74507 0.75090 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.93 13.67 21.76 0.30 -49.64 15 2 C 0.02 1.20 5.51 85.12 0.47 1.67 15 3 Si 1.15 62.37 25.68 68.60 1.76 64.13 15 4 H -0.31 -16.59 7.11 99.48 0.71 -15.89 15 5 H -0.28 -15.52 6.73 99.48 0.67 -14.85 15 6 H -0.29 -15.93 7.11 99.48 0.71 -15.22 15 7 C -0.51 -29.28 9.66 23.30 0.23 -29.06 15 8 H 0.07 4.12 8.05 -2.91 -0.02 4.10 15 9 C 0.19 9.85 6.25 39.68 0.25 10.10 15 10 C -0.44 -18.49 10.99 67.77 0.74 -17.75 15 11 S 0.26 7.95 22.87 -56.49 -1.29 6.66 15 12 C 0.07 2.92 7.42 87.23 0.65 3.57 15 13 C 0.07 2.46 7.19 23.77 0.17 2.63 15 14 C 0.03 0.78 11.64 82.94 0.97 1.75 15 15 N -0.43 -10.83 3.53 -468.70 -1.65 -12.48 15 16 C -0.04 -0.72 12.05 82.99 1.00 0.28 15 17 C 0.02 0.31 11.85 83.50 0.99 1.30 15 18 N -0.50 -16.35 11.29 -313.76 -3.54 -19.89 15 19 C 0.30 10.58 9.76 179.60 1.75 12.34 15 20 O -0.19 -8.00 10.79 -23.45 -0.25 -8.26 15 21 N -0.51 -25.79 5.32 -183.47 -0.98 -26.77 15 22 H 0.28 15.91 8.73 -92.71 -0.81 15.10 15 23 H 0.17 6.49 8.06 -2.91 -0.02 6.47 15 24 H 0.25 3.07 8.06 -2.91 -0.02 3.05 15 25 H 0.24 1.30 8.06 -2.91 -0.02 1.27 15 26 H 0.23 2.40 8.06 -2.91 -0.02 2.37 15 Total: -1.00 -75.74 255.43 2.72 -73.03 By element: Atomic # 1 Polarization: -14.76 SS G_CDS: 1.16 Total: -13.60 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: 7.21 Total: -13.19 kcal Atomic # 7 Polarization: -102.90 SS G_CDS: -5.87 Total: -108.77 kcal Atomic # 8 Polarization: -8.00 SS G_CDS: -0.25 Total: -8.26 kcal Atomic # 14 Polarization: 62.37 SS G_CDS: 1.76 Total: 64.13 kcal Atomic # 16 Polarization: 7.95 SS G_CDS: -1.29 Total: 6.66 kcal Total: -75.74 2.72 -73.03 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076053766.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 180.811 kcal (2) G-P(sol) polarization free energy of solvation -75.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 105.070 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 107.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds