Wall clock time and date at job start Mon Mar 30 2020 07:14:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99932 * 2 1 4 4 H 1.48498 * 109.47146 * 269.99510 * 3 2 1 5 5 H 1.48505 * 109.46956 * 29.99980 * 3 2 1 6 6 H 1.48496 * 109.46822 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00296 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00104 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47352 * 300.00199 * 9 7 2 11 11 N 1.46900 * 109.46991 * 60.00012 * 9 7 2 12 12 C 1.50700 * 109.47361 * 179.97438 * 9 7 2 13 13 C 1.33361 * 125.19689 * 99.98173 * 12 9 7 14 14 C 1.38447 * 114.93148 * 179.81036 * 13 12 9 15 15 C 1.33478 * 114.89562 * 0.42732 * 14 13 12 16 16 Br 1.89100 * 125.21158 * 179.86097 * 15 14 13 17 17 S 1.75888 * 125.19111 * 280.02789 * 12 9 7 18 18 H 0.96998 * 119.99995 * 0.02562 * 1 2 3 19 19 H 1.00906 * 111.00004 * 296.04274 * 11 9 7 20 20 H 1.00899 * 111.00469 * 60.00002 * 11 9 7 21 21 H 1.08001 * 122.52758 * 0.06170 * 13 12 9 22 22 H 1.07999 * 122.55397 * 180.25295 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8902 11 7 0.4070 -2.5772 -1.1992 12 6 2.2303 -3.6446 0.0005 13 6 2.5862 -4.3516 1.0738 14 6 3.5009 -5.3620 0.8301 15 6 3.8943 -5.4692 -0.4408 16 35 5.1325 -6.7397 -1.0955 17 16 3.0792 -4.2524 -1.4149 18 1 -0.4850 0.8400 -0.0004 19 1 -0.3005 -1.8577 -1.1911 20 1 0.9652 -2.5260 -2.0381 21 1 2.1878 -4.1536 2.0579 22 1 3.8701 -6.0120 1.6095 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084424414.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:42 Heat of formation + Delta-G solvation = 22.896971 kcal Electronic energy + Delta-G solvation = -10221.575263 eV Core-core repulsion = 8142.025053 eV Total energy + Delta-G solvation = -2079.550210 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.45072 -34.74461 -31.79089 -30.90571 -27.93844 -25.79963 -23.42608 -21.28845 -18.63773 -16.82376 -16.26135 -15.26777 -14.58408 -13.86007 -13.23745 -12.67907 -12.63030 -12.23466 -11.60801 -11.37545 -11.06569 -10.99822 -10.51157 -10.43368 -10.04659 -9.96040 -9.85072 -8.79368 -7.96040 -7.92120 -7.35991 -6.23068 -4.40558 1.45463 1.56253 2.30955 2.61917 3.16126 3.22767 3.24984 3.30949 4.23665 5.00572 5.58276 5.89472 6.00805 6.44466 6.51330 6.79147 6.90752 7.39448 7.61702 7.88241 8.47123 8.74594 8.92280 9.31704 10.75203 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.049570 B = 0.005848 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.722292 B = 4786.993678 C = 4947.400394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.069 3.931 3 Si 0.901 3.099 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.272 1.272 7 C -0.549 4.549 8 H 0.059 0.941 9 C 0.264 3.736 10 H 0.062 0.938 11 N -0.849 5.849 12 C -0.068 4.068 13 C -0.190 4.190 14 C -0.074 4.074 15 C -0.245 4.245 16 Br -0.022 7.022 17 S 0.150 5.850 18 H 0.268 0.732 19 H 0.361 0.639 20 H 0.311 0.689 21 H 0.140 0.860 22 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.548 -10.643 -1.570 13.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.530 5.530 2 C -0.135 4.135 3 Si 0.728 3.272 4 H -0.204 1.204 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.590 4.590 8 H 0.078 0.922 9 C 0.152 3.848 10 H 0.080 0.920 11 N -0.379 5.379 12 C -0.188 4.188 13 C -0.219 4.219 14 C -0.109 4.109 15 C -0.441 4.441 16 Br 0.061 6.939 17 S 0.413 5.587 18 H 0.078 0.922 19 H 0.178 0.822 20 H 0.121 0.879 21 H 0.158 0.842 22 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 7.642 -11.338 -3.061 14.011 hybrid contribution 0.611 1.799 1.570 2.465 sum 8.253 -9.538 -1.491 12.701 Atomic orbital electron populations 1.69729 1.05890 1.27602 1.49766 1.25015 0.95003 0.99485 0.93966 0.86438 0.79889 0.82492 0.78349 1.20419 1.20919 1.19690 1.21782 0.93819 0.90552 1.52798 0.92230 1.17739 0.88084 0.86456 0.92543 0.91993 1.59558 1.18406 1.56392 1.03561 1.25593 0.99710 0.99320 0.94195 1.19900 1.03177 0.98502 1.00276 1.20052 0.97423 0.98767 0.94658 1.25807 1.10655 1.07203 1.00421 1.96534 1.56152 1.53746 1.87431 1.84163 1.37484 1.25507 1.11578 0.92179 0.82185 0.87940 0.84190 0.84686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -23.67 11.54 55.43 0.64 -23.03 14 2 C 0.07 1.79 5.38 -17.82 -0.10 1.69 14 3 Si 0.90 20.41 29.54 -169.99 -5.02 15.39 14 4 H -0.28 -6.26 7.11 56.52 0.40 -5.86 14 5 H -0.28 -6.38 7.11 56.52 0.40 -5.98 14 6 H -0.27 -6.19 7.11 56.52 0.40 -5.79 14 7 C -0.55 -14.28 8.71 -34.44 -0.30 -14.58 14 8 H 0.06 1.58 7.74 -52.48 -0.41 1.17 14 9 C 0.26 6.35 3.15 -70.02 -0.22 6.13 14 10 H 0.06 1.62 8.12 -51.93 -0.42 1.20 14 11 N -0.85 -19.67 9.11 -6.65 -0.06 -19.73 14 12 C -0.07 -1.44 5.39 -36.01 -0.19 -1.64 14 13 C -0.19 -3.60 10.04 -41.21 -0.41 -4.02 14 14 C -0.07 -1.25 10.11 -41.17 -0.42 -1.67 14 15 C -0.25 -4.20 6.97 29.07 0.20 -4.00 14 16 Br -0.02 -0.31 34.07 -68.01 -2.32 -2.63 14 17 S 0.15 2.82 22.53 -107.50 -2.42 0.39 14 18 H 0.27 6.81 8.31 -40.82 -0.34 6.47 14 19 H 0.36 8.88 7.08 -39.29 -0.28 8.60 14 20 H 0.31 6.94 8.32 -39.29 -0.33 6.62 14 21 H 0.14 2.47 8.06 -52.49 -0.42 2.05 14 22 H 0.14 1.92 8.06 -52.49 -0.42 1.49 14 LS Contribution 233.53 15.07 3.52 3.52 Total: -1.00 -25.68 233.53 -8.51 -34.19 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -1.41 Total: 9.98 kcal Atomic # 6 Polarization: -16.65 SS G_CDS: -1.44 Total: -18.09 kcal Atomic # 7 Polarization: -43.33 SS G_CDS: 0.58 Total: -42.76 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.02 Total: 15.39 kcal Atomic # 16 Polarization: 2.82 SS G_CDS: -2.42 Total: 0.39 kcal Atomic # 35 Polarization: -0.31 SS G_CDS: -2.32 Total: -2.63 kcal Total LS contribution 3.52 Total: 3.52 kcal Total: -25.68 -8.51 -34.19 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084424414.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.090 kcal (2) G-P(sol) polarization free energy of solvation -25.680 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.513 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.193 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds