Wall clock time and date at job start Mon Mar 30 2020 07:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86803 * 119.99932 * 2 1 4 4 H 1.48498 * 109.47146 * 269.99510 * 3 2 1 5 5 H 1.48505 * 109.46956 * 29.99980 * 3 2 1 6 6 H 1.48496 * 109.46822 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08003 * 120.00296 * 180.02562 * 7 2 1 9 9 C 1.50703 * 120.00104 * 0.02562 * 7 2 1 10 10 H 1.08996 * 109.47352 * 300.00199 * 9 7 2 11 11 N 1.46900 * 109.46991 * 60.00012 * 9 7 2 12 12 C 1.50700 * 109.47361 * 179.97438 * 9 7 2 13 13 C 1.33361 * 125.19689 * 99.98173 * 12 9 7 14 14 C 1.38447 * 114.93148 * 179.81036 * 13 12 9 15 15 C 1.33478 * 114.89562 * 0.42732 * 14 13 12 16 16 Br 1.89100 * 125.21158 * 179.86097 * 15 14 13 17 17 S 1.75888 * 125.19111 * 280.02789 * 12 9 7 18 18 H 0.96998 * 119.99995 * 0.02562 * 1 2 3 19 19 H 1.00906 * 111.00004 * 296.04274 * 11 9 7 20 20 H 1.00899 * 111.00469 * 60.00002 * 11 9 7 21 21 H 1.08001 * 122.52758 * 0.06170 * 13 12 9 22 22 H 1.07999 * 122.55397 * 180.25295 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4968 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2510 -2.4991 0.0005 10 1 0.6240 -2.5567 0.8902 11 7 0.4070 -2.5772 -1.1992 12 6 2.2303 -3.6446 0.0005 13 6 2.5862 -4.3516 1.0738 14 6 3.5009 -5.3620 0.8301 15 6 3.8943 -5.4692 -0.4408 16 35 5.1325 -6.7397 -1.0955 17 16 3.0792 -4.2524 -1.4149 18 1 -0.4850 0.8400 -0.0004 19 1 -0.3005 -1.8577 -1.1911 20 1 0.9652 -2.5260 -2.0381 21 1 2.1878 -4.1536 2.0579 22 1 3.8701 -6.0120 1.6095 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084424414.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:41 Heat of formation + Delta-G solvation = 7.337432 kcal Electronic energy + Delta-G solvation = -10222.249976 eV Core-core repulsion = 8142.025053 eV Total energy + Delta-G solvation = -2080.224923 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.94851 -36.55221 -33.56892 -32.40672 -29.51371 -27.68119 -24.99076 -22.99400 -20.13358 -18.72975 -17.88816 -16.88734 -16.36006 -15.51411 -15.00354 -14.30424 -14.20626 -13.67268 -13.35801 -13.01566 -12.87903 -12.73192 -12.17264 -12.07249 -11.63701 -11.57136 -11.20906 -10.76384 -9.51168 -9.37822 -9.19768 -8.18514 -6.44482 -0.00450 0.18201 0.92826 1.11372 1.36931 1.39616 1.49091 1.80611 2.35203 3.00621 4.06415 4.46870 4.55855 4.64158 5.02061 5.14650 5.43109 5.58735 5.60011 5.95429 6.53215 6.79145 6.98984 7.31137 8.76824 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.049570 B = 0.005848 C = 0.005658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 564.722292 B = 4786.993678 C = 4947.400394 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.912 5.912 2 C 0.027 3.973 3 Si 0.960 3.040 4 H -0.274 1.274 5 H -0.279 1.279 6 H -0.273 1.273 7 C -0.563 4.563 8 H 0.049 0.951 9 C 0.268 3.732 10 H 0.031 0.969 11 N -0.841 5.841 12 C -0.111 4.111 13 C -0.181 4.181 14 C -0.074 4.074 15 C -0.241 4.241 16 Br 0.013 6.987 17 S 0.149 5.851 18 H 0.270 0.730 19 H 0.352 0.648 20 H 0.316 0.684 21 H 0.147 0.853 22 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.906 -11.376 -1.579 14.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.551 5.551 2 C -0.175 4.175 3 Si 0.785 3.215 4 H -0.199 1.199 5 H -0.205 1.205 6 H -0.198 1.198 7 C -0.603 4.603 8 H 0.068 0.932 9 C 0.156 3.844 10 H 0.049 0.951 11 N -0.371 5.371 12 C -0.231 4.231 13 C -0.211 4.211 14 C -0.109 4.109 15 C -0.437 4.437 16 Br 0.096 6.904 17 S 0.412 5.588 18 H 0.080 0.920 19 H 0.167 0.833 20 H 0.126 0.874 21 H 0.165 0.835 22 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 9.006 -12.083 -3.079 15.381 hybrid contribution 0.246 1.907 1.565 2.479 sum 9.251 -10.176 -1.514 13.836 Atomic orbital electron populations 1.69816 1.06861 1.28322 1.50121 1.25707 0.95772 1.02296 0.93678 0.85530 0.78578 0.79007 0.78391 1.19909 1.20468 1.19806 1.21971 0.93443 0.91911 1.52963 0.93224 1.17455 0.88115 0.87326 0.91461 0.95108 1.59520 1.18158 1.55715 1.03675 1.25298 1.01302 1.00238 0.96247 1.20173 1.02660 0.98177 1.00066 1.20274 0.96685 0.98452 0.95447 1.26086 1.10421 1.06929 1.00274 1.96576 1.54649 1.52070 1.87132 1.84041 1.37604 1.26206 1.10966 0.92019 0.83287 0.87429 0.83508 0.81476 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -48.91 11.54 21.45 0.25 -48.66 14 2 C 0.03 1.39 5.38 84.65 0.46 1.84 14 3 Si 0.96 41.78 29.54 68.60 2.03 43.81 14 4 H -0.27 -11.64 7.11 99.48 0.71 -10.93 14 5 H -0.28 -11.89 7.11 99.48 0.71 -11.18 14 6 H -0.27 -11.85 7.11 99.48 0.71 -11.14 14 7 C -0.56 -29.62 8.71 25.60 0.22 -29.40 14 8 H 0.05 2.65 7.74 -2.91 -0.02 2.63 14 9 C 0.27 13.18 3.15 43.42 0.14 13.32 14 10 H 0.03 1.68 8.12 -2.39 -0.02 1.66 14 11 N -0.84 -39.68 9.11 -174.95 -1.59 -41.28 14 12 C -0.11 -4.69 5.39 24.58 0.13 -4.56 14 13 C -0.18 -6.69 10.04 21.22 0.21 -6.48 14 14 C -0.07 -2.33 10.11 21.24 0.21 -2.12 14 15 C -0.24 -7.70 6.97 66.74 0.47 -7.24 14 16 Br 0.01 0.32 34.07 -20.37 -0.69 -0.37 14 17 S 0.15 5.45 22.53 -56.49 -1.27 4.18 14 18 H 0.27 13.77 8.31 -92.71 -0.77 13.00 14 19 H 0.35 17.67 7.08 -89.69 -0.63 17.04 14 20 H 0.32 14.26 8.32 -89.69 -0.75 13.52 14 21 H 0.15 5.09 8.06 -2.91 -0.02 5.07 14 22 H 0.17 4.12 8.06 -2.91 -0.02 4.09 14 Total: -1.00 -53.63 233.53 0.43 -53.19 By element: Atomic # 1 Polarization: 23.87 SS G_CDS: -0.12 Total: 23.75 kcal Atomic # 6 Polarization: -36.46 SS G_CDS: 1.84 Total: -34.62 kcal Atomic # 7 Polarization: -88.59 SS G_CDS: -1.35 Total: -89.94 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 2.03 Total: 43.81 kcal Atomic # 16 Polarization: 5.45 SS G_CDS: -1.27 Total: 4.18 kcal Atomic # 35 Polarization: 0.32 SS G_CDS: -0.69 Total: -0.37 kcal Total: -53.63 0.43 -53.19 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084424414.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.532 kcal (2) G-P(sol) polarization free energy of solvation -53.628 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.904 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.433 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.195 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds