Wall clock time and date at job start Mon Mar 30 2020 07:15:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86795 * 120.00227 * 2 1 4 4 H 1.48503 * 109.47294 * 270.00278 * 3 2 1 5 5 H 1.48499 * 109.47218 * 30.00138 * 3 2 1 6 6 H 1.48505 * 109.47256 * 150.00144 * 3 2 1 7 7 C 1.38811 * 119.99700 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00547 * 359.97438 * 7 2 1 9 9 N 1.36945 * 120.00031 * 179.97438 * 7 2 1 10 10 C 1.46493 * 119.99892 * 179.72716 * 9 7 2 11 11 C 1.50698 * 109.47084 * 179.97438 * 10 9 7 12 12 S 1.75883 * 125.20683 * 270.02561 * 11 10 9 13 13 C 1.75878 * 90.98317 * 179.97438 * 12 11 10 14 14 C 1.33397 * 109.60563 * 359.97438 * 13 12 11 15 15 C 1.33434 * 125.20109 * 89.71532 * 11 10 9 16 16 Br 1.89105 * 122.54890 * 0.04275 * 15 11 10 17 17 H 0.97004 * 120.00256 * 359.97438 * 1 2 3 18 18 H 0.97000 * 119.99317 * 359.97438 * 9 7 2 19 19 H 1.08998 * 109.47351 * 299.99725 * 10 9 7 20 20 H 1.09001 * 109.47288 * 59.99879 * 10 9 7 21 21 H 1.07999 * 125.19910 * 179.97438 * 13 12 11 22 22 H 1.07997 * 122.54849 * 179.97438 * 14 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6526 0.7001 6 1 3.5478 1.4401 0.7000 7 6 2.0101 -1.2022 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2023 -0.0011 10 6 4.1120 -2.4710 0.0044 11 6 5.5936 -2.1957 0.0019 12 16 6.5893 -2.0167 -1.4368 13 6 8.0198 -1.7460 -0.4500 14 6 7.6898 -1.8012 0.8413 15 6 6.3497 -2.0447 1.0910 16 35 5.6457 -2.1598 2.8423 17 1 -0.4851 0.8401 0.0004 18 1 3.8645 -0.3622 -0.0014 19 1 3.8490 -3.0385 0.8971 20 1 3.8482 -3.0466 -0.8829 21 1 9.0136 -1.5631 -0.8312 22 1 8.4123 -1.6635 1.6321 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087575588.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:15:35 Heat of formation + Delta-G solvation = 50.978022 kcal Electronic energy + Delta-G solvation = -10215.319572 eV Core-core repulsion = 8136.987048 eV Total energy + Delta-G solvation = -2078.332525 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.05623 -34.85515 -31.83496 -30.82198 -29.20046 -25.58313 -23.21727 -21.76533 -18.94391 -18.04332 -16.72001 -15.40213 -14.71293 -13.88856 -13.58865 -13.33391 -12.74005 -12.59627 -11.95146 -11.76247 -11.20391 -10.88650 -10.71911 -10.53282 -10.18173 -9.89881 -9.61060 -8.92756 -8.63176 -8.28621 -7.27584 -5.77709 -3.14335 0.93706 1.30911 1.84761 2.47359 2.52849 3.39110 3.43889 3.46442 4.59766 4.88775 5.13471 5.44143 5.53463 5.61611 5.79195 6.07018 6.11336 6.40999 6.52488 7.94826 8.39999 9.17204 9.89638 10.08864 11.40215 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.023321 B = 0.009580 C = 0.007845 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.325503 B = 2922.129552 C = 3568.255550 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.010 3.990 3 Si 0.878 3.122 4 H -0.283 1.283 5 H -0.289 1.289 6 H -0.275 1.275 7 C -0.244 4.244 8 H 0.093 0.907 9 N -0.744 5.744 10 C 0.216 3.784 11 C -0.136 4.136 12 S 0.143 5.857 13 C -0.223 4.223 14 C -0.115 4.115 15 C -0.110 4.110 16 Br -0.025 7.025 17 H 0.260 0.740 18 H 0.363 0.637 19 H 0.057 0.943 20 H 0.043 0.957 21 H 0.168 0.832 22 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.597 -4.978 2.279 18.429 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.186 4.186 3 Si 0.708 3.292 4 H -0.210 1.210 5 H -0.216 1.216 6 H -0.201 1.201 7 C -0.373 4.373 8 H 0.111 0.889 9 N -0.391 5.391 10 C 0.087 3.913 11 C -0.257 4.257 12 S 0.406 5.594 13 C -0.360 4.360 14 C -0.146 4.146 15 C -0.202 4.202 16 Br 0.059 6.941 17 H 0.070 0.930 18 H 0.196 0.804 19 H 0.075 0.925 20 H 0.061 0.939 21 H 0.185 0.815 22 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 16.831 -5.161 1.359 17.657 hybrid contribution 1.094 1.394 1.146 2.111 sum 17.926 -3.767 2.505 18.488 Atomic orbital electron populations 1.69692 1.05047 1.25883 1.57282 1.24602 0.95154 0.97079 1.01748 0.86624 0.79512 0.85125 0.77905 1.20954 1.21574 1.20093 1.19002 0.80013 0.94902 1.43420 0.88947 1.42610 1.03911 1.01295 1.91246 1.19309 0.80839 0.90553 1.00584 1.25081 1.01761 1.04406 0.94462 1.84428 0.97912 1.68677 1.08371 1.25567 1.02741 1.11004 0.96663 1.19926 0.94512 1.03174 0.96985 1.20755 0.95163 1.11971 0.92359 1.96687 1.86091 1.97403 1.13927 0.92985 0.80359 0.92530 0.93946 0.81452 0.83796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.30 13.97 55.49 0.78 -28.53 14 2 C 0.01 0.30 5.50 -17.43 -0.10 0.21 14 3 Si 0.88 22.44 27.73 -169.99 -4.71 17.72 14 4 H -0.28 -7.14 7.11 56.52 0.40 -6.74 14 5 H -0.29 -7.46 7.11 56.52 0.40 -7.05 14 6 H -0.27 -6.75 6.52 56.52 0.37 -6.38 14 7 C -0.24 -6.91 10.47 -15.06 -0.16 -7.06 14 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 14 9 N -0.74 -17.97 5.40 -61.09 -0.33 -18.30 14 10 C 0.22 4.30 6.39 -5.20 -0.03 4.27 14 11 C -0.14 -2.32 5.88 -35.99 -0.21 -2.53 14 12 S 0.14 1.99 23.33 -107.50 -2.51 -0.51 14 13 C -0.22 -2.64 11.23 29.04 0.33 -2.32 14 14 C -0.11 -1.50 10.04 -41.19 -0.41 -1.92 14 15 C -0.11 -1.75 6.17 -41.18 -0.25 -2.01 14 16 Br -0.02 -0.40 32.71 -68.01 -2.22 -2.62 14 17 H 0.26 7.80 8.31 -40.82 -0.34 7.46 14 18 H 0.36 8.80 5.52 -40.82 -0.23 8.58 14 19 H 0.06 1.15 7.32 -51.93 -0.38 0.77 14 20 H 0.04 0.83 8.14 -51.93 -0.42 0.41 14 21 H 0.17 1.44 8.06 -52.49 -0.42 1.01 14 22 H 0.14 1.57 8.06 -52.49 -0.42 1.15 14 LS Contribution 233.03 15.07 3.51 3.51 Total: -1.00 -30.75 233.03 -7.79 -38.55 By element: Atomic # 1 Polarization: 3.01 SS G_CDS: -1.46 Total: 1.55 kcal Atomic # 6 Polarization: -10.52 SS G_CDS: -0.84 Total: -11.36 kcal Atomic # 7 Polarization: -47.28 SS G_CDS: 0.45 Total: -46.83 kcal Atomic # 14 Polarization: 22.44 SS G_CDS: -4.71 Total: 17.72 kcal Atomic # 16 Polarization: 1.99 SS G_CDS: -2.51 Total: -0.51 kcal Atomic # 35 Polarization: -0.40 SS G_CDS: -2.22 Total: -2.62 kcal Total LS contribution 3.51 Total: 3.51 kcal Total: -30.75 -7.79 -38.55 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087575588.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.524 kcal (2) G-P(sol) polarization free energy of solvation -30.752 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.773 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds