Wall clock time and date at job start Mon Mar 30 2020 06:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.46496 * 119.99768 * 2 1 4 4 C 1.39998 * 119.99818 * 179.97438 * 2 1 3 5 5 C 1.38863 * 120.00184 * 359.97438 * 4 2 1 6 6 C 1.38089 * 120.00178 * 180.02562 * 5 4 2 7 7 C 1.38860 * 119.99731 * 359.97438 * 6 5 4 8 8 N 1.40002 * 120.00079 * 179.97438 * 7 6 5 9 9 C 1.46499 * 120.00392 * 179.97438 * 8 7 6 10 10 C 1.52999 * 109.47375 * 180.90593 * 9 8 7 11 11 C 1.50700 * 115.55064 * 65.12432 * 10 9 8 12 12 H 1.07998 * 119.99591 * 265.36925 * 11 10 9 13 13 C 1.37876 * 119.99796 * 85.36337 * 11 10 9 14 14 N 1.31515 * 120.00242 * 353.39058 * 13 11 10 15 15 Si 1.86800 * 119.99559 * 173.38982 * 13 11 10 16 16 H 1.48505 * 109.47379 * 90.00297 * 15 13 11 17 17 H 1.48506 * 109.47110 * 210.00127 * 15 13 11 18 18 H 1.48496 * 109.47336 * 330.00064 * 15 13 11 19 19 C 1.53003 * 117.49766 * 279.45446 * 10 9 8 20 20 C 1.52997 * 117.50171 * 210.79466 * 10 9 8 21 21 C 1.38859 * 120.00467 * 0.25435 * 7 6 5 22 22 C 1.38101 * 119.99471 * 359.51312 * 21 7 6 23 23 H 1.08998 * 109.47280 * 239.99955 * 1 2 3 24 24 H 1.08997 * 109.47087 * 0.02562 * 1 2 3 25 25 H 1.08994 * 109.46793 * 120.00035 * 1 2 3 26 26 H 1.09003 * 109.47336 * 269.99314 * 3 2 1 27 27 H 1.08995 * 109.47480 * 30.00281 * 3 2 1 28 28 H 1.09007 * 109.46905 * 150.00004 * 3 2 1 29 29 H 1.07996 * 119.99680 * 0.02562 * 5 4 2 30 30 H 1.07993 * 120.00277 * 179.97438 * 6 5 4 31 31 H 0.97004 * 119.99680 * 0.02562 * 8 7 6 32 32 H 1.08998 * 109.47176 * 300.90729 * 9 8 7 33 33 H 1.09005 * 109.46953 * 60.90981 * 9 8 7 34 34 H 0.96997 * 119.99521 * 185.06159 * 14 13 11 35 35 H 1.08999 * 117.49845 * 0.02562 * 19 10 9 36 36 H 1.08998 * 117.49595 * 145.01894 * 19 10 9 37 37 H 1.08997 * 117.50417 * 214.98078 * 20 10 9 38 38 H 1.09006 * 117.49597 * 359.97438 * 20 10 9 39 39 H 1.07996 * 120.00307 * 179.72559 * 21 7 6 40 40 H 1.08000 * 119.99974 * 180.23507 * 22 21 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1650 -1.2124 0.0005 5 6 1.4707 -2.4150 0.0016 6 6 2.1611 -3.6109 0.0027 7 6 3.5497 -3.6109 0.0021 8 7 4.2498 -4.8233 0.0038 9 6 5.7147 -4.8234 0.0026 10 6 6.2247 -6.2657 -0.0180 11 6 5.9012 -7.0518 -1.2624 12 1 5.0239 -7.6809 -1.2907 13 6 6.7253 -6.9677 -2.3646 14 7 7.7184 -6.1056 -2.3789 15 14 6.4311 -8.0783 -3.8375 16 1 5.5070 -7.4072 -4.7868 17 1 7.7232 -8.3538 -4.5156 18 1 5.8292 -9.3568 -3.3811 19 6 6.2511 -7.0248 1.3102 20 6 7.5598 -6.5530 0.6718 21 6 4.2441 -2.4084 0.0059 22 6 3.5536 -1.2124 0.0000 23 1 -0.3634 -0.5138 0.8899 24 1 -0.3633 1.0276 -0.0005 25 1 -0.3633 -0.5138 -0.8900 26 1 2.3793 1.5834 -1.0277 27 1 1.6085 2.0283 0.5138 28 1 3.1500 1.1384 0.5139 29 1 0.3907 -2.4150 0.0016 30 1 1.6212 -4.5462 0.0039 31 1 3.7647 -5.6634 0.0049 32 1 6.0774 -4.2971 -0.8803 33 1 6.0788 -4.3221 0.8995 34 1 8.2524 -5.9944 -3.1810 35 1 5.9047 -6.4967 2.1986 36 1 6.0347 -8.0928 1.2839 37 1 8.2041 -7.3107 0.2258 38 1 8.0751 -5.7142 1.1400 39 1 5.3240 -2.4084 0.0099 40 1 4.0936 -0.2771 -0.0010 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088249618.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:37 Heat of formation + Delta-G solvation = 47.584699 kcal Electronic energy + Delta-G solvation = -18956.687976 eV Core-core repulsion = 16157.533916 eV Total energy + Delta-G solvation = -2799.154060 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.47691 -38.83380 -37.31643 -34.62802 -33.94732 -31.94373 -29.84311 -28.86368 -27.69775 -26.69814 -24.59494 -23.13968 -22.90276 -21.31648 -20.94765 -18.46677 -18.05556 -17.21394 -16.62742 -16.54054 -15.82487 -15.75402 -15.39819 -15.31216 -14.69691 -14.34188 -14.21188 -13.90347 -13.57284 -13.36888 -13.27490 -13.08453 -12.91476 -12.83598 -12.71492 -12.63364 -12.34892 -12.04051 -11.54474 -11.39104 -11.25521 -10.73707 -10.43544 -10.01646 -9.72514 -9.25870 -8.09700 -7.36138 -6.20824 0.62693 1.03817 1.40168 1.42439 1.50810 2.41997 2.47006 2.86280 3.17155 3.19183 3.57962 4.06255 4.20042 4.28456 4.31119 4.49056 4.57605 4.58960 4.63322 4.67928 4.75208 4.83686 4.86091 4.89240 4.96736 4.98187 4.99465 5.07921 5.26081 5.27010 5.43006 5.49313 5.63103 5.66400 5.70778 5.78790 5.96936 6.38691 6.60179 6.66925 6.83873 6.84884 7.23841 7.47278 8.97964 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.025966 B = 0.004385 C = 0.004178 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1078.059342 B = 6384.012598 C = 6699.804630 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.654 5.654 3 C 0.095 3.905 4 C 0.139 3.861 5 C -0.144 4.144 6 C -0.164 4.164 7 C 0.159 3.841 8 N -0.734 5.734 9 C 0.191 3.809 10 C 0.008 3.992 11 C -0.503 4.503 12 H 0.054 0.946 13 C 0.028 3.972 14 N -0.906 5.906 15 Si 0.946 3.054 16 H -0.281 1.281 17 H -0.286 1.286 18 H -0.268 1.268 19 C -0.182 4.182 20 C -0.157 4.157 21 C -0.174 4.174 22 C -0.150 4.150 23 H 0.051 0.949 24 H 0.090 0.910 25 H 0.047 0.953 26 H 0.042 0.958 27 H 0.083 0.917 28 H 0.061 0.939 29 H 0.137 0.863 30 H 0.127 0.873 31 H 0.396 0.604 32 H 0.025 0.975 33 H 0.030 0.970 34 H 0.259 0.741 35 H 0.087 0.913 36 H 0.079 0.921 37 H 0.061 0.939 38 H 0.074 0.926 39 H 0.106 0.894 40 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.294 11.859 5.589 17.973 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.371 5.371 3 C -0.048 4.048 4 C 0.039 3.961 5 C -0.167 4.167 6 C -0.188 4.188 7 C 0.055 3.945 8 N -0.363 5.363 9 C 0.066 3.934 10 C 0.007 3.993 11 C -0.541 4.541 12 H 0.072 0.928 13 C -0.173 4.173 14 N -0.544 5.544 15 Si 0.772 3.228 16 H -0.207 1.207 17 H -0.211 1.211 18 H -0.192 1.192 19 C -0.220 4.220 20 C -0.196 4.196 21 C -0.198 4.198 22 C -0.173 4.173 23 H 0.070 0.930 24 H 0.109 0.891 25 H 0.066 0.934 26 H 0.061 0.939 27 H 0.102 0.898 28 H 0.080 0.920 29 H 0.155 0.845 30 H 0.145 0.855 31 H 0.230 0.770 32 H 0.044 0.956 33 H 0.048 0.952 34 H 0.068 0.932 35 H 0.106 0.894 36 H 0.098 0.902 37 H 0.079 0.921 38 H 0.092 0.908 39 H 0.124 0.876 40 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -11.972 12.060 5.500 17.861 hybrid contribution 0.329 -0.979 -1.076 1.492 sum -11.643 11.080 4.424 16.670 Atomic orbital electron populations 1.21616 0.78725 1.03275 1.00807 1.46346 1.05383 1.02598 1.82744 1.21673 0.97431 0.84730 1.00998 1.17676 0.90887 0.86582 1.00955 1.20540 0.99768 0.90182 1.06186 1.20518 0.91441 0.98736 1.08078 1.18063 0.91770 0.86604 0.98111 1.44564 1.05016 1.04733 1.82022 1.20440 0.79911 0.96300 0.96767 1.19062 0.97354 0.91888 0.90964 1.20611 1.09152 1.26471 0.97896 0.92825 1.25617 0.94542 0.96357 1.00769 1.70078 1.20171 1.35562 1.28552 0.85746 0.77234 0.79867 0.79933 1.20705 1.21130 1.19206 1.22972 1.02181 0.99816 0.96989 1.22424 0.91068 1.01798 1.04265 1.20505 0.99075 0.91546 1.08646 1.20553 0.92577 0.97523 1.06625 0.93049 0.89136 0.93445 0.93919 0.89798 0.91987 0.84526 0.85484 0.76972 0.95650 0.95192 0.93209 0.89443 0.90233 0.92052 0.90762 0.87581 0.85131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.57 9.40 127.77 1.20 2.78 16 2 N -0.65 -14.52 3.42 -747.05 -2.55 -17.08 16 3 C 0.09 1.61 10.16 127.77 1.30 2.91 16 4 C 0.14 3.99 6.56 38.13 0.25 4.24 16 5 C -0.14 -4.11 9.31 22.38 0.21 -3.90 16 6 C -0.16 -5.31 9.89 22.38 0.22 -5.09 16 7 C 0.16 5.96 6.66 38.13 0.25 6.21 16 8 N -0.73 -29.97 5.66 -339.22 -1.92 -31.89 16 9 C 0.19 8.68 4.74 86.38 0.41 9.09 16 10 C 0.01 0.38 1.37 -52.93 -0.07 0.31 16 11 C -0.50 -26.83 8.66 25.60 0.22 -26.61 16 12 H 0.05 2.84 7.82 -2.91 -0.02 2.82 16 13 C 0.03 1.51 5.39 84.65 0.46 1.96 16 14 N -0.91 -51.62 12.92 21.45 0.28 -51.34 16 15 Si 0.95 43.49 29.55 68.60 2.03 45.52 16 16 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 17 H -0.29 -13.00 7.11 99.48 0.71 -12.29 16 18 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 19 C -0.18 -7.60 9.96 30.62 0.30 -7.30 16 20 C -0.16 -7.28 9.42 30.62 0.29 -6.99 16 21 C -0.17 -6.36 9.31 22.39 0.21 -6.15 16 22 C -0.15 -4.67 9.20 22.39 0.21 -4.46 16 23 H 0.05 0.79 7.95 -2.39 -0.02 0.77 16 24 H 0.09 0.98 7.79 -2.39 -0.02 0.96 16 25 H 0.05 0.77 7.95 -2.39 -0.02 0.75 16 26 H 0.04 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.08 1.00 7.92 -2.39 -0.02 0.98 16 28 H 0.06 1.09 6.20 -2.38 -0.01 1.08 16 29 H 0.14 3.15 6.73 -2.91 -0.02 3.13 16 30 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 31 H 0.40 15.82 8.41 -92.71 -0.78 15.04 16 32 H 0.03 1.32 7.92 -2.39 -0.02 1.30 16 33 H 0.03 1.30 7.93 -2.38 -0.02 1.28 16 34 H 0.26 14.20 8.32 -92.71 -0.77 13.43 16 35 H 0.09 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 37 H 0.06 3.07 8.14 -2.39 -0.02 3.05 16 38 H 0.07 3.22 8.14 -2.38 -0.02 3.20 16 39 H 0.11 4.05 6.73 -2.91 -0.02 4.03 16 40 H 0.13 3.49 6.14 -2.91 -0.02 3.47 16 Total: -1.00 -60.82 329.46 3.53 -57.29 By element: Atomic # 1 Polarization: 30.26 SS G_CDS: 0.24 Total: 30.50 kcal Atomic # 6 Polarization: -38.46 SS G_CDS: 5.46 Total: -33.00 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -4.20 Total: -100.31 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -60.82 3.53 -57.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088249618.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.875 kcal (2) G-P(sol) polarization free energy of solvation -60.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.528 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.290 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.585 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds