Wall clock time and date at job start Mon Mar 30 2020 06:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 110.99883 * 2 1 4 4 C 1.50698 * 109.47368 * 293.95694 * 3 2 1 5 5 C 1.38307 * 119.95994 * 269.72778 * 4 3 2 6 6 C 1.38268 * 120.14939 * 179.72670 * 5 4 3 7 7 C 1.38125 * 120.07218 * 0.54557 * 6 5 4 8 8 C 1.38891 * 119.92348 * 359.72359 * 7 6 5 9 9 N 1.39676 * 120.07077 * 179.97438 * 8 7 6 10 10 C 1.38078 * 119.96410 * 89.99757 * 4 3 2 11 11 C 1.46897 * 111.00260 * 123.95778 * 2 1 3 12 12 C 1.52997 * 109.47097 * 71.45316 * 11 2 1 13 13 C 1.50698 * 115.55119 * 54.04977 * 12 11 2 14 14 H 1.08003 * 120.00276 * 215.59176 * 13 12 11 15 15 C 1.37880 * 119.99923 * 35.31183 * 13 12 11 16 16 N 1.31505 * 120.00154 * 355.68129 * 15 13 12 17 17 Si 1.86801 * 119.99772 * 175.67410 * 15 13 12 18 18 H 1.48501 * 109.47445 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46990 * 120.00075 * 17 15 13 20 20 H 1.48494 * 109.47421 * 240.00233 * 17 15 13 21 21 C 1.53008 * 117.49995 * 199.71587 * 12 11 2 22 22 C 1.53001 * 117.50211 * 268.37690 * 12 11 2 23 23 H 1.08996 * 109.47161 * 301.06821 * 1 2 3 24 24 H 1.08996 * 109.46912 * 61.07090 * 1 2 3 25 25 H 1.09001 * 109.46823 * 181.06782 * 1 2 3 26 26 H 1.08998 * 109.47034 * 53.95700 * 3 2 1 27 27 H 1.09002 * 109.46841 * 173.95384 * 3 2 1 28 28 H 1.08006 * 119.92978 * 359.97438 * 5 4 3 29 29 H 1.08005 * 119.96666 * 180.27455 * 6 5 4 30 30 H 1.08000 * 120.03857 * 179.75483 * 7 6 5 31 31 H 0.97007 * 119.99943 * 180.02562 * 9 8 7 32 32 H 0.97003 * 120.00473 * 0.03161 * 9 8 7 33 33 H 1.07999 * 120.03733 * 359.97438 * 10 4 3 34 34 H 1.08996 * 109.46743 * 311.45579 * 11 2 1 35 35 H 1.08999 * 109.47264 * 191.45566 * 11 2 1 36 36 H 0.96997 * 120.00299 * 184.99900 * 16 15 13 37 37 H 1.09000 * 117.50054 * 215.00539 * 21 12 11 38 38 H 1.09002 * 117.49444 * 0.02562 * 21 12 11 39 39 H 1.09006 * 117.49773 * 359.97438 * 22 12 11 40 40 H 1.08997 * 117.50198 * 144.97700 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 6 2.4975 1.9693 -2.3783 6 6 2.1698 2.5830 -3.5731 7 6 0.9863 3.2859 -3.6885 8 6 0.1225 3.3708 -2.6042 9 7 -1.0748 4.0812 -2.7173 10 6 0.4522 2.7481 -1.4068 11 6 1.9955 -0.7660 1.1375 12 6 1.7500 -2.2581 0.9049 13 6 2.2711 -2.8073 -0.3981 14 1 1.7214 -3.5783 -0.9176 15 6 3.4466 -2.3213 -0.9301 16 7 4.0687 -1.3208 -0.3458 17 14 4.1557 -3.0842 -2.4808 18 1 3.2718 -4.1858 -2.9394 19 1 4.2491 -2.0505 -3.5429 20 1 5.5095 -3.6223 -2.1933 21 6 1.7895 -3.1794 2.1259 22 6 0.4527 -2.8548 1.4545 23 1 -0.3633 0.5303 0.8802 24 1 -0.3633 0.4971 -0.8994 25 1 -0.3633 -1.0275 0.0192 26 1 1.5611 1.9273 0.8309 27 1 3.0797 1.3444 0.1082 28 1 3.4258 1.4244 -2.2893 29 1 2.8420 2.5166 -4.4159 30 1 0.7328 3.7684 -4.6208 31 1 -1.6773 4.1401 -1.9592 32 1 -1.3040 4.5155 -3.5538 33 1 -0.2175 2.8119 -0.5620 34 1 1.4906 -0.4528 2.0512 35 1 3.0660 -0.5846 1.2334 36 1 4.8554 -0.9314 -0.7584 37 1 2.1925 -4.1826 1.9866 38 1 1.9901 -2.7223 3.0949 39 1 -0.2257 -2.1843 1.9822 40 1 -0.0241 -3.6441 0.8734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088255632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:40 Heat of formation + Delta-G solvation = 64.007102 kcal Electronic energy + Delta-G solvation = -19900.984049 eV Core-core repulsion = 17102.542118 eV Total energy + Delta-G solvation = -2798.441931 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -39.14118 -37.32686 -35.18288 -33.84954 -31.93078 -30.76003 -28.37810 -26.49056 -26.02635 -25.12364 -22.02919 -21.79017 -21.08094 -20.05610 -18.75630 -16.62379 -16.41361 -15.95838 -15.41714 -14.67484 -14.42283 -14.22705 -13.87862 -13.50026 -13.25195 -12.94752 -12.68384 -12.49705 -12.06643 -11.38599 -11.21011 -11.09045 -10.90887 -10.82199 -10.56704 -10.42683 -10.37036 -10.33704 -10.18791 -9.82648 -9.27812 -8.73525 -8.54184 -8.33208 -7.99650 -7.19934 -6.95922 -5.74258 -3.82562 1.84192 2.08488 3.39569 3.47585 3.51549 4.03827 4.28948 4.55404 5.05070 5.25929 5.33465 5.42280 5.60925 5.71636 5.89513 5.95617 6.01466 6.18722 6.21742 6.25004 6.35250 6.39871 6.50587 6.56341 6.65231 6.72967 6.76622 6.79276 6.91862 7.00865 7.01342 7.25983 7.29195 7.35426 7.41116 7.71906 7.76565 7.90331 8.13957 8.34689 8.40627 8.68230 9.11555 9.77293 11.21760 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.007209 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.876923 B = 3883.175876 C = 4825.302503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.484 5.484 3 C 0.098 3.902 4 C -0.011 4.011 5 C -0.144 4.144 6 C -0.079 4.079 7 C -0.207 4.207 8 C 0.203 3.797 9 N -0.886 5.886 10 C -0.192 4.192 11 C 0.108 3.892 12 C 0.067 3.933 13 C -0.469 4.469 14 H 0.052 0.948 15 C 0.088 3.912 16 N -0.871 5.871 17 Si 0.887 3.113 18 H -0.277 1.277 19 H -0.284 1.284 20 H -0.288 1.288 21 C -0.211 4.211 22 C -0.218 4.218 23 H -0.002 1.002 24 H 0.054 0.946 25 H 0.071 0.929 26 H 0.017 0.983 27 H 0.088 0.912 28 H 0.123 0.877 29 H 0.114 0.886 30 H 0.110 0.890 31 H 0.394 0.606 32 H 0.393 0.607 33 H 0.111 0.889 34 H -0.021 1.021 35 H 0.119 0.881 36 H 0.254 0.746 37 H 0.076 0.924 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.844 10.251 -2.473 12.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.206 5.206 3 C -0.030 4.030 4 C -0.012 4.012 5 C -0.165 4.165 6 C -0.098 4.098 7 C -0.230 4.230 8 C 0.101 3.899 9 N -0.426 5.426 10 C -0.215 4.215 11 C -0.018 4.018 12 C 0.066 3.934 13 C -0.506 4.506 14 H 0.070 0.930 15 C -0.115 4.115 16 N -0.509 5.509 17 Si 0.716 3.284 18 H -0.202 1.202 19 H -0.210 1.210 20 H -0.215 1.215 21 C -0.250 4.250 22 C -0.256 4.256 23 H 0.016 0.984 24 H 0.072 0.928 25 H 0.090 0.910 26 H 0.035 0.965 27 H 0.106 0.894 28 H 0.141 0.859 29 H 0.132 0.868 30 H 0.128 0.872 31 H 0.221 0.779 32 H 0.220 0.780 33 H 0.129 0.871 34 H -0.003 1.003 35 H 0.136 0.864 36 H 0.064 0.936 37 H 0.094 0.906 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.416 10.057 -2.882 11.780 hybrid contribution -0.472 0.116 -0.157 0.511 sum -5.888 10.173 -3.039 12.140 Atomic orbital electron populations 1.22469 0.90056 1.01700 0.98034 1.61556 1.04803 1.09239 1.44983 1.21025 1.01223 0.89396 0.91369 1.19677 0.92519 0.93028 0.95995 1.20901 1.01239 1.01660 0.92654 1.20846 0.95679 0.95969 0.97323 1.20417 0.96964 1.07944 0.97689 1.17684 0.86506 0.91832 0.93906 1.42374 1.21704 1.61277 1.17213 1.20439 0.99270 1.05174 0.96629 1.21825 1.02182 0.92041 0.85797 1.19004 0.92013 0.90098 0.92313 1.20303 1.05565 1.20252 1.04507 0.92961 1.24714 0.96229 0.94419 0.96090 1.69779 1.19750 1.23438 1.37929 0.86633 0.78678 0.79289 0.83840 1.20214 1.21015 1.21459 1.23003 1.01506 1.02228 0.98218 1.22928 0.91466 1.04590 1.06604 0.98374 0.92762 0.91047 0.96483 0.89390 0.85931 0.86753 0.87200 0.77902 0.78012 0.87090 1.00332 0.86356 0.93554 0.90562 0.92045 0.91976 0.90988 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.52 8.88 60.07 0.53 1.06 16 2 N -0.48 -10.63 4.05 -244.38 -0.99 -11.62 16 3 C 0.10 1.91 5.11 -4.98 -0.03 1.88 16 4 C -0.01 -0.20 4.88 -104.66 -0.51 -0.71 16 5 C -0.14 -2.63 9.69 -39.55 -0.38 -3.01 16 6 C -0.08 -1.26 10.04 -39.61 -0.40 -1.66 16 7 C -0.21 -3.01 9.90 -39.38 -0.39 -3.40 16 8 C 0.20 2.94 6.75 -83.79 -0.57 2.37 16 9 N -0.89 -9.38 9.09 32.41 0.29 -9.08 16 10 C -0.19 -3.09 7.84 -39.38 -0.31 -3.40 16 11 C 0.11 2.54 3.90 -3.83 -0.01 2.53 16 12 C 0.07 1.64 1.65 -155.66 -0.26 1.39 16 13 C -0.47 -12.75 8.74 -34.44 -0.30 -13.05 16 14 H 0.05 1.46 7.82 -52.48 -0.41 1.05 16 15 C 0.09 2.35 5.31 -17.82 -0.09 2.26 16 16 N -0.87 -22.97 10.10 55.43 0.56 -22.41 16 17 Si 0.89 21.31 29.54 -169.99 -5.02 16.28 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 20 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 21 C -0.21 -4.82 9.96 -26.69 -0.27 -5.09 16 22 C -0.22 -4.85 8.36 -26.69 -0.22 -5.07 16 23 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 24 H 0.05 1.04 6.23 -51.93 -0.32 0.72 16 25 H 0.07 1.51 6.02 -51.93 -0.31 1.20 16 26 H 0.02 0.32 8.06 -51.93 -0.42 -0.10 16 27 H 0.09 1.81 7.81 -51.93 -0.41 1.41 16 28 H 0.12 2.37 8.06 -52.48 -0.42 1.95 16 29 H 0.11 1.57 8.06 -52.48 -0.42 1.15 16 30 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 31 H 0.39 3.56 8.84 -40.82 -0.36 3.20 16 32 H 0.39 3.31 8.84 -40.82 -0.36 2.95 16 33 H 0.11 1.67 8.03 -52.49 -0.42 1.24 16 34 H -0.02 -0.48 8.00 -51.93 -0.42 -0.90 16 35 H 0.12 3.01 5.62 -51.93 -0.29 2.72 16 36 H 0.25 6.48 8.32 -40.82 -0.34 6.14 16 37 H 0.08 1.75 8.14 -51.93 -0.42 1.33 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.89 16 39 H 0.06 1.28 8.06 -51.93 -0.42 0.87 16 40 H 0.07 1.59 8.14 -51.93 -0.42 1.16 16 LS Contribution 323.52 15.07 4.88 4.88 Total: -1.00 -27.97 323.52 -9.72 -37.69 By element: Atomic # 1 Polarization: 14.40 SS G_CDS: -6.23 Total: 8.16 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: -3.20 Total: -23.90 kcal Atomic # 7 Polarization: -42.98 SS G_CDS: -0.14 Total: -43.12 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -27.97 -9.72 -37.69 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.698 kcal (2) G-P(sol) polarization free energy of solvation -27.970 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.728 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 64.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds