Wall clock time and date at job start Mon Mar 30 2020 06:59:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46901 * 110.99883 * 2 1 4 4 C 1.50698 * 109.47368 * 293.95694 * 3 2 1 5 5 C 1.38307 * 119.95994 * 269.72778 * 4 3 2 6 6 C 1.38268 * 120.14939 * 179.72670 * 5 4 3 7 7 C 1.38125 * 120.07218 * 0.54557 * 6 5 4 8 8 C 1.38891 * 119.92348 * 359.72359 * 7 6 5 9 9 N 1.39676 * 120.07077 * 179.97438 * 8 7 6 10 10 C 1.38078 * 119.96410 * 89.99757 * 4 3 2 11 11 C 1.46897 * 111.00260 * 123.95778 * 2 1 3 12 12 C 1.52997 * 109.47097 * 71.45316 * 11 2 1 13 13 C 1.50698 * 115.55119 * 54.04977 * 12 11 2 14 14 H 1.08003 * 120.00276 * 215.59176 * 13 12 11 15 15 C 1.37880 * 119.99923 * 35.31183 * 13 12 11 16 16 N 1.31505 * 120.00154 * 355.68129 * 15 13 12 17 17 Si 1.86801 * 119.99772 * 175.67410 * 15 13 12 18 18 H 1.48501 * 109.47445 * 0.02562 * 17 15 13 19 19 H 1.48503 * 109.46990 * 120.00075 * 17 15 13 20 20 H 1.48494 * 109.47421 * 240.00233 * 17 15 13 21 21 C 1.53008 * 117.49995 * 199.71587 * 12 11 2 22 22 C 1.53001 * 117.50211 * 268.37690 * 12 11 2 23 23 H 1.08996 * 109.47161 * 301.06821 * 1 2 3 24 24 H 1.08996 * 109.46912 * 61.07090 * 1 2 3 25 25 H 1.09001 * 109.46823 * 181.06782 * 1 2 3 26 26 H 1.08998 * 109.47034 * 53.95700 * 3 2 1 27 27 H 1.09002 * 109.46841 * 173.95384 * 3 2 1 28 28 H 1.08006 * 119.92978 * 359.97438 * 5 4 3 29 29 H 1.08005 * 119.96666 * 180.27455 * 6 5 4 30 30 H 1.08000 * 120.03857 * 179.75483 * 7 6 5 31 31 H 0.97007 * 119.99943 * 180.02562 * 9 8 7 32 32 H 0.97003 * 120.00473 * 0.03161 * 9 8 7 33 33 H 1.07999 * 120.03733 * 359.97438 * 10 4 3 34 34 H 1.08996 * 109.46743 * 311.45579 * 11 2 1 35 35 H 1.08999 * 109.47264 * 191.45566 * 11 2 1 36 36 H 0.96997 * 120.00299 * 184.99900 * 16 15 13 37 37 H 1.09000 * 117.50054 * 215.00539 * 21 12 11 38 38 H 1.09002 * 117.49444 * 0.02562 * 21 12 11 39 39 H 1.09006 * 117.49773 * 359.97438 * 22 12 11 40 40 H 1.08997 * 117.50198 * 144.97700 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 6 2.4975 1.9693 -2.3783 6 6 2.1698 2.5830 -3.5731 7 6 0.9863 3.2859 -3.6885 8 6 0.1225 3.3708 -2.6042 9 7 -1.0748 4.0812 -2.7173 10 6 0.4522 2.7481 -1.4068 11 6 1.9955 -0.7660 1.1375 12 6 1.7500 -2.2581 0.9049 13 6 2.2711 -2.8073 -0.3981 14 1 1.7214 -3.5783 -0.9176 15 6 3.4466 -2.3213 -0.9301 16 7 4.0687 -1.3208 -0.3458 17 14 4.1557 -3.0842 -2.4808 18 1 3.2718 -4.1858 -2.9394 19 1 4.2491 -2.0505 -3.5429 20 1 5.5095 -3.6223 -2.1933 21 6 1.7895 -3.1794 2.1259 22 6 0.4527 -2.8548 1.4545 23 1 -0.3633 0.5303 0.8802 24 1 -0.3633 0.4971 -0.8994 25 1 -0.3633 -1.0275 0.0192 26 1 1.5611 1.9273 0.8309 27 1 3.0797 1.3444 0.1082 28 1 3.4258 1.4244 -2.2893 29 1 2.8420 2.5166 -4.4159 30 1 0.7328 3.7684 -4.6208 31 1 -1.6773 4.1401 -1.9592 32 1 -1.3040 4.5155 -3.5538 33 1 -0.2175 2.8119 -0.5620 34 1 1.4906 -0.4528 2.0512 35 1 3.0660 -0.5846 1.2334 36 1 4.8554 -0.9314 -0.7584 37 1 2.1925 -4.1826 1.9866 38 1 1.9901 -2.7223 3.0949 39 1 -0.2257 -2.1843 1.9822 40 1 -0.0241 -3.6441 0.8734 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255632.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:40 Heat of formation + Delta-G solvation = 48.249839 kcal Electronic energy + Delta-G solvation = -19901.667335 eV Core-core repulsion = 17102.542118 eV Total energy + Delta-G solvation = -2799.125217 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.41341 -39.03797 -36.73612 -35.05925 -33.95941 -32.09573 -29.54820 -28.16153 -27.64749 -27.03146 -23.49096 -23.07681 -22.86962 -21.43796 -20.67501 -18.07572 -17.62160 -17.42060 -16.65732 -16.60431 -16.07039 -15.79893 -15.57220 -15.01445 -14.64485 -14.37399 -14.17914 -13.89549 -13.47229 -13.23787 -13.01803 -12.83897 -12.57658 -12.45898 -12.28781 -12.15627 -12.00340 -11.79158 -11.77084 -11.34021 -11.12266 -10.69595 -10.42402 -9.94510 -9.59475 -8.60496 -8.29556 -7.75809 -5.90383 0.60065 0.84005 1.45524 1.49780 1.56985 2.55616 2.97130 3.11893 3.22188 3.64875 3.83116 4.04826 4.09497 4.34876 4.40555 4.51887 4.57159 4.66463 4.69770 4.78318 4.78785 4.80847 4.95090 4.98904 5.01375 5.11865 5.18792 5.21601 5.27750 5.46286 5.50391 5.59388 5.72742 5.77511 6.02679 6.09150 6.15199 6.52023 6.68290 6.71920 6.82194 7.08332 7.11244 7.69954 9.16380 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019071 B = 0.007209 C = 0.005801 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.876923 B = 3883.175876 C = 4825.302503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.504 5.504 3 C 0.106 3.894 4 C -0.027 4.027 5 C -0.175 4.175 6 C -0.081 4.081 7 C -0.207 4.207 8 C 0.211 3.789 9 N -0.868 5.868 10 C -0.200 4.200 11 C 0.120 3.880 12 C 0.037 3.963 13 C -0.489 4.489 14 H 0.034 0.966 15 C 0.055 3.945 16 N -0.876 5.876 17 Si 0.933 3.067 18 H -0.281 1.281 19 H -0.284 1.284 20 H -0.284 1.284 21 C -0.208 4.208 22 C -0.198 4.198 23 H 0.015 0.985 24 H 0.060 0.940 25 H 0.057 0.943 26 H 0.028 0.972 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.132 0.868 30 H 0.140 0.860 31 H 0.404 0.596 32 H 0.407 0.593 33 H 0.122 0.878 34 H -0.014 1.014 35 H 0.094 0.906 36 H 0.253 0.747 37 H 0.069 0.931 38 H 0.076 0.924 39 H 0.081 0.919 40 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.476 11.592 -3.196 14.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.226 5.226 3 C -0.022 4.022 4 C -0.028 4.028 5 C -0.196 4.196 6 C -0.100 4.100 7 C -0.230 4.230 8 C 0.105 3.895 9 N -0.409 5.409 10 C -0.223 4.223 11 C -0.007 4.007 12 C 0.036 3.964 13 C -0.527 4.527 14 H 0.052 0.948 15 C -0.147 4.147 16 N -0.514 5.514 17 Si 0.761 3.239 18 H -0.206 1.206 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.247 4.247 22 C -0.235 4.235 23 H 0.033 0.967 24 H 0.079 0.921 25 H 0.075 0.925 26 H 0.046 0.954 27 H 0.084 0.916 28 H 0.115 0.885 29 H 0.149 0.851 30 H 0.158 0.842 31 H 0.233 0.767 32 H 0.236 0.764 33 H 0.140 0.860 34 H 0.003 0.997 35 H 0.112 0.888 36 H 0.063 0.937 37 H 0.088 0.912 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -7.080 11.420 -3.605 13.912 hybrid contribution -0.017 -0.248 0.040 0.251 sum -7.097 11.172 -3.565 13.708 Atomic orbital electron populations 1.22363 0.88852 1.01075 0.99082 1.61466 1.06024 1.10563 1.44565 1.20895 0.99826 0.88575 0.92912 1.19579 0.93778 0.94212 0.95219 1.20826 1.00954 1.03564 0.94265 1.21053 0.96650 0.95449 0.96816 1.20740 0.96129 1.07226 0.98906 1.17770 0.87469 0.91049 0.93165 1.42330 1.20297 1.59870 1.18417 1.20488 0.98673 1.05349 0.97834 1.21545 1.00803 0.91697 0.86658 1.19103 0.94226 0.90995 0.92054 1.20402 1.06014 1.20394 1.05878 0.94753 1.25193 0.96511 0.94878 0.98108 1.69898 1.19616 1.23512 1.38335 0.85912 0.78023 0.78395 0.81521 1.20608 1.21042 1.21068 1.23002 1.01948 1.01545 0.98207 1.22878 0.90966 1.04091 1.05554 0.96707 0.92115 0.92453 0.95360 0.91638 0.88547 0.85059 0.84191 0.76704 0.76358 0.86046 0.99659 0.88828 0.93684 0.91192 0.90581 0.90106 0.91166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.35 8.88 127.69 1.13 2.49 16 2 N -0.50 -22.23 4.05 -927.07 -3.75 -25.99 16 3 C 0.11 4.18 5.11 85.56 0.44 4.62 16 4 C -0.03 -0.97 4.88 -19.89 -0.10 -1.07 16 5 C -0.18 -6.50 9.69 22.29 0.22 -6.28 16 6 C -0.08 -2.48 10.04 22.25 0.22 -2.25 16 7 C -0.21 -5.43 9.90 22.40 0.22 -5.20 16 8 C 0.21 5.47 6.75 38.21 0.26 5.73 16 9 N -0.87 -15.07 9.09 -51.37 -0.47 -15.54 16 10 C -0.20 -6.09 7.84 22.40 0.18 -5.91 16 11 C 0.12 5.68 3.90 86.30 0.34 6.02 16 12 C 0.04 1.83 1.65 -52.93 -0.09 1.74 16 13 C -0.49 -27.01 8.74 25.60 0.22 -26.79 16 14 H 0.03 1.96 7.82 -2.91 -0.02 1.94 16 15 C 0.05 2.98 5.31 84.66 0.45 3.43 16 16 N -0.88 -47.28 10.10 21.45 0.22 -47.06 16 17 Si 0.93 44.39 29.54 68.60 2.03 46.41 16 18 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 19 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 20 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 21 C -0.21 -9.40 9.96 30.62 0.30 -9.09 16 22 C -0.20 -8.56 8.36 30.62 0.26 -8.30 16 23 H 0.01 0.52 8.14 -2.39 -0.02 0.50 16 24 H 0.06 2.26 6.23 -2.39 -0.01 2.24 16 25 H 0.06 2.37 6.02 -2.39 -0.01 2.36 16 26 H 0.03 1.03 8.06 -2.39 -0.02 1.01 16 27 H 0.07 2.83 7.81 -2.39 -0.02 2.81 16 28 H 0.10 3.97 8.06 -2.91 -0.02 3.94 16 29 H 0.13 3.43 8.06 -2.91 -0.02 3.41 16 30 H 0.14 2.79 8.06 -2.91 -0.02 2.77 16 31 H 0.40 5.76 8.84 -92.70 -0.82 4.94 16 32 H 0.41 5.12 8.84 -92.71 -0.82 4.30 16 33 H 0.12 3.36 8.03 -2.91 -0.02 3.33 16 34 H -0.01 -0.64 8.00 -2.39 -0.02 -0.66 16 35 H 0.09 4.88 5.62 -2.39 -0.01 4.87 16 36 H 0.25 13.26 8.32 -92.71 -0.77 12.49 16 37 H 0.07 3.20 8.14 -2.39 -0.02 3.18 16 38 H 0.08 3.17 8.14 -2.39 -0.02 3.15 16 39 H 0.08 3.17 8.06 -2.38 -0.02 3.15 16 40 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 Total: -1.00 -59.78 323.52 1.47 -58.30 By element: Atomic # 1 Polarization: 25.35 SS G_CDS: -0.60 Total: 24.75 kcal Atomic # 6 Polarization: -44.93 SS G_CDS: 4.05 Total: -40.87 kcal Atomic # 7 Polarization: -84.58 SS G_CDS: -4.01 Total: -88.59 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.41 kcal Total: -59.78 1.47 -58.30 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255632.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.553 kcal (2) G-P(sol) polarization free energy of solvation -59.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 46.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.250 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds