Wall clock time and date at job start Mon Mar 30 2020 06:59:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46902 * 110.99643 * 2 1 4 4 C 1.50702 * 109.47024 * 66.05012 * 3 2 1 5 5 C 1.38286 * 119.92373 * 269.72289 * 4 3 2 6 6 C 1.38101 * 120.07346 * 179.72931 * 5 4 3 7 7 C 1.38921 * 119.92205 * 0.54392 * 6 5 4 8 8 N 1.39669 * 120.07326 * 179.70786 * 7 6 5 9 9 C 1.38908 * 119.85020 * 359.73297 * 7 6 5 10 10 C 1.38105 * 119.92763 * 359.97438 * 9 7 6 11 11 C 1.46902 * 110.99811 * 236.05337 * 2 1 3 12 12 C 1.53000 * 109.46675 * 287.82376 * 11 2 1 13 13 C 1.50709 * 115.55047 * 305.24096 * 12 11 2 14 14 H 1.07995 * 119.99668 * 88.94056 * 13 12 11 15 15 C 1.37872 * 119.99948 * 268.66116 * 13 12 11 16 16 N 1.31517 * 120.00063 * 356.06700 * 15 13 12 17 17 Si 1.86794 * 120.00066 * 176.06071 * 15 13 12 18 18 H 1.48498 * 109.47233 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46998 * 120.00016 * 17 15 13 20 20 H 1.48501 * 109.47184 * 240.00128 * 17 15 13 21 21 C 1.52999 * 117.50302 * 90.91274 * 12 11 2 22 22 C 1.53002 * 117.49776 * 159.57305 * 12 11 2 23 23 H 1.08994 * 109.46833 * 186.24717 * 1 2 3 24 24 H 1.09000 * 109.46843 * 306.24045 * 1 2 3 25 25 H 1.08999 * 109.47388 * 66.24007 * 1 2 3 26 26 H 1.09005 * 109.47145 * 186.04993 * 3 2 1 27 27 H 1.08996 * 109.47281 * 306.04681 * 3 2 1 28 28 H 1.07996 * 119.96383 * 359.97438 * 5 4 3 29 29 H 1.07991 * 120.04081 * 180.27421 * 6 5 4 30 30 H 0.96998 * 120.00397 * 180.02562 * 8 7 6 31 31 H 0.97000 * 120.00255 * 0.02562 * 8 7 6 32 32 H 1.08005 * 120.03831 * 179.97438 * 9 7 6 33 33 H 1.07999 * 119.96611 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.47211 * 167.82762 * 11 2 1 35 35 H 1.08998 * 109.47271 * 47.81962 * 11 2 1 36 36 H 0.96998 * 120.00197 * 185.00846 * 16 15 13 37 37 H 1.08998 * 117.50124 * 215.00687 * 21 12 11 38 38 H 1.09007 * 117.49361 * 0.02562 * 21 12 11 39 39 H 1.08994 * 117.50063 * 359.97283 * 22 12 11 40 40 H 1.09004 * 117.49660 * 144.97480 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 6 0.4529 2.7536 1.4046 6 6 0.1187 3.3693 2.5948 7 6 0.9788 3.2877 3.6826 8 7 0.6468 3.9142 4.8859 9 6 2.1700 2.5819 3.5708 10 6 2.4953 1.9635 2.3795 11 6 1.9955 -0.7659 -1.1377 12 6 1.7660 -2.2593 -0.8970 13 6 2.3157 -2.8010 0.3975 14 1 1.7081 -2.7863 1.2902 15 6 3.5920 -3.3206 0.4406 16 7 4.3013 -3.4147 -0.6629 17 14 4.3139 -3.8908 2.0663 18 1 3.3208 -3.6799 3.1500 19 1 4.6514 -5.3343 1.9789 20 1 5.5432 -3.1120 2.3624 21 6 0.4633 -2.8673 -1.4207 22 6 1.7898 -3.1832 -2.1163 23 1 -0.3633 -1.0215 0.1118 24 1 -0.3633 0.6075 0.8289 25 1 -0.3634 0.4140 -0.9405 26 1 3.0797 1.3445 -0.1083 27 1 1.5611 1.9274 -0.8309 28 1 -0.2130 2.8208 0.5570 29 1 -0.8081 3.9172 2.6784 30 1 1.2483 3.8569 5.6447 31 1 -0.1853 4.4067 4.9628 32 1 2.8412 2.5168 4.4145 33 1 3.4215 1.4150 2.2917 34 1 3.0635 -0.5745 -1.2415 35 1 1.4815 -0.4616 -2.0495 36 1 5.1699 -3.8462 -0.6459 37 1 0.0039 -3.6591 -0.8290 38 1 -0.2300 -2.2034 -1.9372 39 1 1.9685 -2.7271 -3.0899 40 1 2.2034 -4.1828 -1.9823 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088255633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:44 Heat of formation + Delta-G solvation = 57.007542 kcal Electronic energy + Delta-G solvation = -19436.995847 eV Core-core repulsion = 16638.250392 eV Total energy + Delta-G solvation = -2798.745455 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -39.31635 -37.43881 -35.48973 -33.81110 -31.68563 -30.65553 -29.43177 -26.86809 -25.70382 -24.90646 -22.57051 -21.85347 -20.91492 -20.28854 -18.86137 -16.93169 -16.75621 -15.94374 -15.16319 -14.74015 -14.52852 -14.40092 -13.83781 -13.68051 -13.34881 -13.10336 -12.88150 -12.74748 -12.41806 -11.54971 -11.40349 -11.16734 -11.04119 -10.84294 -10.72001 -10.59743 -10.55133 -10.31340 -10.21655 -9.98591 -9.25952 -8.76216 -8.63940 -8.21579 -7.92067 -7.41487 -7.20565 -5.82801 -3.85561 1.70528 1.84878 3.39160 3.47256 3.53544 3.91032 4.08951 4.56465 4.92654 5.09519 5.21073 5.35060 5.41790 5.57589 5.63977 5.73003 5.91910 5.95823 6.06661 6.11344 6.20455 6.31014 6.36221 6.42001 6.52195 6.58341 6.65528 6.68963 6.72250 6.86071 7.03086 7.10408 7.11259 7.26891 7.58361 7.60161 7.71326 7.76781 7.97038 8.08918 8.12043 8.68456 9.14158 9.76701 11.24850 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.005980 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.479331 B = 4681.504599 C = 5621.975943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.510 5.510 3 C 0.097 3.903 4 C -0.118 4.118 5 C -0.068 4.068 6 C -0.202 4.202 7 C 0.205 3.795 8 N -0.885 5.885 9 C -0.198 4.198 10 C -0.046 4.046 11 C 0.103 3.897 12 C 0.049 3.951 13 C -0.455 4.455 14 H 0.058 0.942 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.886 3.114 18 H -0.273 1.273 19 H -0.289 1.289 20 H -0.286 1.286 21 C -0.219 4.219 22 C -0.148 4.148 23 H 0.073 0.927 24 H 0.058 0.942 25 H 0.006 0.994 26 H 0.076 0.924 27 H 0.026 0.974 28 H 0.115 0.885 29 H 0.113 0.887 30 H 0.395 0.605 31 H 0.394 0.606 32 H 0.115 0.885 33 H 0.124 0.876 34 H 0.069 0.931 35 H 0.001 0.999 36 H 0.255 0.745 37 H 0.074 0.926 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.227 13.462 5.326 15.760 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 N -0.233 5.233 3 C -0.030 4.030 4 C -0.120 4.120 5 C -0.087 4.087 6 C -0.224 4.224 7 C 0.101 3.899 8 N -0.424 5.424 9 C -0.221 4.221 10 C -0.066 4.066 11 C -0.024 4.024 12 C 0.048 3.952 13 C -0.494 4.494 14 H 0.077 0.923 15 C -0.136 4.136 16 N -0.529 5.529 17 Si 0.715 3.285 18 H -0.198 1.198 19 H -0.215 1.215 20 H -0.213 1.213 21 C -0.256 4.256 22 C -0.186 4.186 23 H 0.092 0.908 24 H 0.077 0.923 25 H 0.025 0.975 26 H 0.095 0.905 27 H 0.044 0.956 28 H 0.133 0.867 29 H 0.131 0.869 30 H 0.222 0.778 31 H 0.221 0.779 32 H 0.133 0.867 33 H 0.142 0.858 34 H 0.087 0.913 35 H 0.019 0.981 36 H 0.065 0.935 37 H 0.093 0.907 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -5.839 13.200 5.646 15.498 hybrid contribution 0.072 0.152 0.431 0.463 sum -5.767 13.351 6.077 15.762 Atomic orbital electron populations 1.22413 0.88749 1.02493 0.98288 1.61805 1.06632 1.10062 1.44770 1.20977 1.00240 0.89358 0.92456 1.19602 0.95541 1.00353 0.96548 1.20756 0.95701 0.95633 0.96625 1.20435 1.00687 1.07899 0.93421 1.17744 0.93469 0.92296 0.86354 1.42406 1.26296 1.61454 1.12273 1.20552 0.97478 1.04905 0.99170 1.20838 0.99091 0.95176 0.91459 1.21738 0.98615 0.94595 0.87437 1.18822 0.93410 0.88567 0.94367 1.20318 0.97835 1.37843 0.93357 0.92346 1.24924 0.96855 0.96045 0.95789 1.70020 1.12619 1.44078 1.26208 0.86629 0.79179 0.77806 0.84916 1.19799 1.21549 1.21251 1.23081 0.91683 1.04417 1.06423 1.22460 0.98329 1.02302 0.95473 0.90787 0.92343 0.97515 0.90533 0.95609 0.86723 0.86902 0.77777 0.77890 0.86686 0.85792 0.91260 0.98058 0.93530 0.90748 0.92395 0.92544 0.89416 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.53 8.97 60.07 0.54 1.07 16 2 N -0.51 -10.36 4.40 -244.37 -1.07 -11.44 16 3 C 0.10 1.69 5.11 -4.97 -0.03 1.66 16 4 C -0.12 -1.89 4.89 -104.59 -0.51 -2.40 16 5 C -0.07 -0.96 7.88 -39.61 -0.31 -1.28 16 6 C -0.20 -2.61 9.90 -39.38 -0.39 -3.00 16 7 C 0.20 2.61 6.75 -83.79 -0.57 2.04 16 8 N -0.88 -8.10 9.09 32.41 0.29 -7.81 16 9 C -0.20 -2.77 9.90 -39.38 -0.39 -3.16 16 10 C -0.05 -0.74 9.69 -39.61 -0.38 -1.12 16 11 C 0.10 2.32 4.88 -3.82 -0.02 2.30 16 12 C 0.05 1.22 1.34 -155.66 -0.21 1.01 16 13 C -0.46 -12.54 8.56 -34.44 -0.29 -12.84 16 14 H 0.06 1.66 7.82 -52.49 -0.41 1.25 16 15 C 0.06 1.79 5.41 -17.82 -0.10 1.70 16 16 N -0.89 -25.50 12.13 55.43 0.67 -24.83 16 17 Si 0.89 21.80 29.54 -169.99 -5.02 16.78 16 18 H -0.27 -6.71 7.11 56.52 0.40 -6.31 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 21 C -0.22 -4.90 8.47 -26.69 -0.23 -5.12 16 22 C -0.15 -3.57 8.94 -26.69 -0.24 -3.81 16 23 H 0.07 1.46 6.48 -51.93 -0.34 1.12 16 24 H 0.06 0.99 5.75 -51.93 -0.30 0.69 16 25 H 0.01 0.11 8.07 -51.93 -0.42 -0.31 16 26 H 0.08 1.34 7.80 -51.93 -0.41 0.94 16 27 H 0.03 0.42 8.06 -51.93 -0.42 0.00 16 28 H 0.11 1.47 7.96 -52.49 -0.42 1.06 16 29 H 0.11 1.20 8.06 -52.49 -0.42 0.78 16 30 H 0.39 2.97 8.84 -40.82 -0.36 2.61 16 31 H 0.39 2.83 8.84 -40.82 -0.36 2.46 16 32 H 0.12 1.40 8.06 -52.48 -0.42 0.97 16 33 H 0.12 1.99 8.06 -52.49 -0.42 1.57 16 34 H 0.07 1.67 7.81 -51.93 -0.41 1.26 16 35 H 0.00 0.03 7.94 -51.93 -0.41 -0.38 16 36 H 0.25 7.03 8.32 -40.82 -0.34 6.69 16 37 H 0.07 1.68 8.14 -51.93 -0.42 1.25 16 38 H 0.06 1.18 8.14 -51.92 -0.42 0.76 16 39 H 0.06 1.29 8.14 -51.93 -0.42 0.86 16 40 H 0.09 2.30 7.81 -51.93 -0.41 1.90 16 LS Contribution 327.27 15.07 4.93 4.93 Total: -1.00 -29.79 327.27 -9.64 -39.44 By element: Atomic # 1 Polarization: 12.20 SS G_CDS: -6.32 Total: 5.88 kcal Atomic # 6 Polarization: -19.83 SS G_CDS: -3.12 Total: -22.95 kcal Atomic # 7 Polarization: -43.97 SS G_CDS: -0.11 Total: -44.08 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -5.02 Total: 16.78 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.79 -9.64 -39.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.444 kcal (2) G-P(sol) polarization free energy of solvation -29.792 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.651 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.644 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.436 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds