Wall clock time and date at job start Mon Mar 30 2020 06:59:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46907 * 1 3 3 C 1.46902 * 110.99643 * 2 1 4 4 C 1.50702 * 109.47024 * 66.05012 * 3 2 1 5 5 C 1.38286 * 119.92373 * 269.72289 * 4 3 2 6 6 C 1.38101 * 120.07346 * 179.72931 * 5 4 3 7 7 C 1.38921 * 119.92205 * 0.54392 * 6 5 4 8 8 N 1.39669 * 120.07326 * 179.70786 * 7 6 5 9 9 C 1.38908 * 119.85020 * 359.73297 * 7 6 5 10 10 C 1.38105 * 119.92763 * 359.97438 * 9 7 6 11 11 C 1.46902 * 110.99811 * 236.05337 * 2 1 3 12 12 C 1.53000 * 109.46675 * 287.82376 * 11 2 1 13 13 C 1.50709 * 115.55047 * 305.24096 * 12 11 2 14 14 H 1.07995 * 119.99668 * 88.94056 * 13 12 11 15 15 C 1.37872 * 119.99948 * 268.66116 * 13 12 11 16 16 N 1.31517 * 120.00063 * 356.06700 * 15 13 12 17 17 Si 1.86794 * 120.00066 * 176.06071 * 15 13 12 18 18 H 1.48498 * 109.47233 * 0.02562 * 17 15 13 19 19 H 1.48504 * 109.46998 * 120.00016 * 17 15 13 20 20 H 1.48501 * 109.47184 * 240.00128 * 17 15 13 21 21 C 1.52999 * 117.50302 * 90.91274 * 12 11 2 22 22 C 1.53002 * 117.49776 * 159.57305 * 12 11 2 23 23 H 1.08994 * 109.46833 * 186.24717 * 1 2 3 24 24 H 1.09000 * 109.46843 * 306.24045 * 1 2 3 25 25 H 1.08999 * 109.47388 * 66.24007 * 1 2 3 26 26 H 1.09005 * 109.47145 * 186.04993 * 3 2 1 27 27 H 1.08996 * 109.47281 * 306.04681 * 3 2 1 28 28 H 1.07996 * 119.96383 * 359.97438 * 5 4 3 29 29 H 1.07991 * 120.04081 * 180.27421 * 6 5 4 30 30 H 0.96998 * 120.00397 * 180.02562 * 8 7 6 31 31 H 0.97000 * 120.00255 * 0.02562 * 8 7 6 32 32 H 1.08005 * 120.03831 * 179.97438 * 9 7 6 33 33 H 1.07999 * 119.96611 * 179.97438 * 10 9 7 34 34 H 1.08995 * 109.47211 * 167.82762 * 11 2 1 35 35 H 1.08998 * 109.47271 * 47.81962 * 11 2 1 36 36 H 0.96998 * 120.00197 * 185.00846 * 16 15 13 37 37 H 1.08998 * 117.50124 * 215.00687 * 21 12 11 38 38 H 1.09007 * 117.49361 * 0.02562 * 21 12 11 39 39 H 1.08994 * 117.50063 * 359.97283 * 22 12 11 40 40 H 1.09004 * 117.49660 * 144.97480 * 22 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4691 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2985 5 6 0.4529 2.7536 1.4046 6 6 0.1187 3.3693 2.5948 7 6 0.9788 3.2877 3.6826 8 7 0.6468 3.9142 4.8859 9 6 2.1700 2.5819 3.5708 10 6 2.4953 1.9635 2.3795 11 6 1.9955 -0.7659 -1.1377 12 6 1.7660 -2.2593 -0.8970 13 6 2.3157 -2.8010 0.3975 14 1 1.7081 -2.7863 1.2902 15 6 3.5920 -3.3206 0.4406 16 7 4.3013 -3.4147 -0.6629 17 14 4.3139 -3.8908 2.0663 18 1 3.3208 -3.6799 3.1500 19 1 4.6514 -5.3343 1.9789 20 1 5.5432 -3.1120 2.3624 21 6 0.4633 -2.8673 -1.4207 22 6 1.7898 -3.1832 -2.1163 23 1 -0.3633 -1.0215 0.1118 24 1 -0.3633 0.6075 0.8289 25 1 -0.3634 0.4140 -0.9405 26 1 3.0797 1.3445 -0.1083 27 1 1.5611 1.9274 -0.8309 28 1 -0.2130 2.8208 0.5570 29 1 -0.8081 3.9172 2.6784 30 1 1.2483 3.8569 5.6447 31 1 -0.1853 4.4067 4.9628 32 1 2.8412 2.5168 4.4145 33 1 3.4215 1.4150 2.2917 34 1 3.0635 -0.5745 -1.2415 35 1 1.4815 -0.4616 -2.0495 36 1 5.1699 -3.8462 -0.6459 37 1 0.0039 -3.6591 -0.8290 38 1 -0.2300 -2.2034 -1.9372 39 1 1.9685 -2.7271 -3.0899 40 1 2.2034 -4.1828 -1.9823 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255633.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:59:43 Heat of formation + Delta-G solvation = 39.167217 kcal Electronic energy + Delta-G solvation = -19437.769461 eV Core-core repulsion = 16638.250392 eV Total energy + Delta-G solvation = -2799.519070 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.43751 -39.08025 -36.98670 -34.98115 -33.79343 -31.71962 -30.60290 -28.49473 -27.43842 -26.56049 -23.66610 -23.20671 -22.78807 -21.51953 -20.81388 -17.95502 -17.85908 -17.63205 -16.66788 -16.31286 -16.17808 -15.96224 -15.47098 -14.97740 -14.65070 -14.35584 -14.15400 -14.00395 -13.90569 -13.37805 -13.05912 -12.84321 -12.76263 -12.48589 -12.41792 -12.29967 -12.05918 -11.88429 -11.69832 -11.29263 -11.13841 -10.78635 -10.25985 -9.83201 -9.72077 -8.86621 -8.25257 -7.96229 -6.03486 0.63204 0.75014 1.41231 1.44665 1.55533 2.50700 2.93131 3.11437 3.30133 3.43395 3.71978 4.02205 4.11280 4.24608 4.35139 4.46181 4.53259 4.59091 4.64446 4.70193 4.78018 4.81184 4.87011 4.95566 5.03278 5.06436 5.12268 5.26291 5.26699 5.36359 5.48529 5.59685 5.73621 5.78791 5.91777 5.96741 6.07477 6.41479 6.51933 6.65789 6.69150 6.99491 7.09153 7.60699 9.10654 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019735 B = 0.005980 C = 0.004979 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1418.479331 B = 4681.504599 C = 5621.975943 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.531 5.531 3 C 0.103 3.897 4 C -0.141 4.141 5 C -0.068 4.068 6 C -0.204 4.204 7 C 0.209 3.791 8 N -0.869 5.869 9 C -0.210 4.210 10 C -0.067 4.067 11 C 0.117 3.883 12 C 0.025 3.975 13 C -0.463 4.463 14 H 0.042 0.958 15 C 0.021 3.979 16 N -0.915 5.915 17 Si 0.941 3.059 18 H -0.273 1.273 19 H -0.284 1.284 20 H -0.285 1.285 21 C -0.191 4.191 22 C -0.154 4.154 23 H 0.056 0.944 24 H 0.071 0.929 25 H 0.024 0.976 26 H 0.061 0.939 27 H 0.041 0.959 28 H 0.129 0.871 29 H 0.140 0.860 30 H 0.404 0.596 31 H 0.407 0.593 32 H 0.128 0.872 33 H 0.107 0.893 34 H 0.041 0.959 35 H 0.015 0.985 36 H 0.254 0.746 37 H 0.070 0.930 38 H 0.085 0.915 39 H 0.068 0.932 40 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.940 15.081 6.384 18.200 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 N -0.255 5.255 3 C -0.024 4.024 4 C -0.143 4.143 5 C -0.087 4.087 6 C -0.226 4.226 7 C 0.104 3.896 8 N -0.410 5.410 9 C -0.233 4.233 10 C -0.087 4.087 11 C -0.011 4.011 12 C 0.024 3.976 13 C -0.501 4.501 14 H 0.060 0.940 15 C -0.177 4.177 16 N -0.555 5.555 17 Si 0.768 3.232 18 H -0.198 1.198 19 H -0.210 1.210 20 H -0.211 1.211 21 C -0.228 4.228 22 C -0.193 4.193 23 H 0.075 0.925 24 H 0.090 0.910 25 H 0.042 0.958 26 H 0.079 0.921 27 H 0.059 0.941 28 H 0.147 0.853 29 H 0.158 0.842 30 H 0.233 0.767 31 H 0.236 0.764 32 H 0.146 0.854 33 H 0.125 0.875 34 H 0.060 0.940 35 H 0.033 0.967 36 H 0.064 0.936 37 H 0.089 0.911 38 H 0.104 0.896 39 H 0.087 0.913 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.572 14.839 6.739 17.971 hybrid contribution 0.557 -0.286 0.179 0.651 sum -7.016 14.553 6.918 17.575 Atomic orbital electron populations 1.22344 0.87381 1.01796 0.99732 1.61709 1.08019 1.11797 1.43946 1.20910 0.99315 0.88096 0.94093 1.19518 0.96917 1.01998 0.95880 1.20908 0.94995 0.95065 0.97729 1.20745 1.01586 1.07488 0.92793 1.17856 0.92774 0.91498 0.87514 1.42381 1.26943 1.60324 1.11339 1.20694 0.98525 1.05167 0.98890 1.20850 0.98929 0.96207 0.92670 1.21428 0.97231 0.93517 0.88914 1.18941 0.95275 0.89922 0.93435 1.20468 0.97896 1.37722 0.94038 0.93954 1.25517 0.97274 0.96552 0.98382 1.70115 1.12811 1.44932 1.27662 0.85774 0.78306 0.77466 0.81662 1.19771 1.21039 1.21120 1.23023 0.90984 1.03828 1.04956 1.22344 0.99936 1.00942 0.96029 0.92516 0.91013 0.95783 0.92087 0.94136 0.85288 0.84174 0.76651 0.76373 0.85401 0.87488 0.94044 0.96674 0.93643 0.91119 0.89644 0.91335 0.92144 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.24 8.97 127.69 1.14 2.38 16 2 N -0.53 -21.46 4.40 -927.04 -4.08 -25.54 16 3 C 0.10 3.56 5.11 85.56 0.44 4.00 16 4 C -0.14 -4.42 4.89 -19.84 -0.10 -4.52 16 5 C -0.07 -1.77 7.88 22.25 0.18 -1.60 16 6 C -0.20 -4.62 9.90 22.40 0.22 -4.40 16 7 C 0.21 4.79 6.75 38.22 0.26 5.04 16 8 N -0.87 -13.04 9.09 -51.37 -0.47 -13.51 16 9 C -0.21 -5.62 9.90 22.40 0.22 -5.40 16 10 C -0.07 -2.14 9.69 22.25 0.22 -1.93 16 11 C 0.12 5.26 4.88 86.30 0.42 5.68 16 12 C 0.03 1.24 1.34 -52.92 -0.07 1.17 16 13 C -0.46 -25.92 8.56 25.60 0.22 -25.70 16 14 H 0.04 2.45 7.82 -2.91 -0.02 2.43 16 15 C 0.02 1.17 5.41 84.65 0.46 1.63 16 16 N -0.92 -53.52 12.13 21.45 0.26 -53.26 16 17 Si 0.94 45.50 29.54 68.60 2.03 47.53 16 18 H -0.27 -13.06 7.11 99.48 0.71 -12.36 16 19 H -0.28 -13.44 7.11 99.48 0.71 -12.74 16 20 H -0.28 -13.64 7.11 99.48 0.71 -12.93 16 21 C -0.19 -8.34 8.47 30.62 0.26 -8.08 16 22 C -0.15 -7.50 8.94 30.62 0.27 -7.22 16 23 H 0.06 2.16 6.48 -2.39 -0.02 2.14 16 24 H 0.07 2.29 5.75 -2.39 -0.01 2.27 16 25 H 0.02 0.75 8.07 -2.39 -0.02 0.73 16 26 H 0.06 2.23 7.80 -2.38 -0.02 2.21 16 27 H 0.04 1.26 8.06 -2.39 -0.02 1.24 16 28 H 0.13 2.93 7.96 -2.91 -0.02 2.91 16 29 H 0.14 2.38 8.06 -2.92 -0.02 2.36 16 30 H 0.40 4.82 8.84 -92.71 -0.82 4.00 16 31 H 0.41 4.28 8.84 -92.71 -0.82 3.46 16 32 H 0.13 2.95 8.06 -2.91 -0.02 2.93 16 33 H 0.11 3.63 8.06 -2.91 -0.02 3.61 16 34 H 0.04 2.05 7.81 -2.39 -0.02 2.03 16 35 H 0.02 0.63 7.94 -2.39 -0.02 0.61 16 36 H 0.25 14.31 8.32 -92.71 -0.77 13.54 16 37 H 0.07 3.12 8.14 -2.39 -0.02 3.10 16 38 H 0.09 3.26 8.14 -2.38 -0.02 3.24 16 39 H 0.07 3.10 8.14 -2.39 -0.02 3.08 16 40 H 0.06 3.24 7.81 -2.39 -0.02 3.22 16 Total: -1.00 -63.89 327.27 1.27 -62.61 By element: Atomic # 1 Polarization: 21.70 SS G_CDS: -0.61 Total: 21.09 kcal Atomic # 6 Polarization: -43.06 SS G_CDS: 4.14 Total: -38.93 kcal Atomic # 7 Polarization: -88.02 SS G_CDS: -4.28 Total: -92.30 kcal Atomic # 14 Polarization: 45.50 SS G_CDS: 2.03 Total: 47.53 kcal Total: -63.89 1.27 -62.61 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255633.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.778 kcal (2) G-P(sol) polarization free energy of solvation -63.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.610 kcal (6) G-S(sol) free energy of system = (1) + (5) 39.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds