Wall clock time and date at job start Mon Mar 30 2020 06:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46906 * 109.47403 * 2 1 4 4 C 1.46899 * 110.99877 * 164.60976 * 3 2 1 5 5 C 1.53004 * 109.46899 * 287.24995 * 4 3 2 6 6 C 1.50703 * 115.54413 * 89.82622 * 5 4 3 7 7 H 1.08005 * 119.99759 * 219.61097 * 6 5 4 8 8 C 1.37874 * 120.00070 * 39.61709 * 6 5 4 9 9 N 1.31515 * 120.00275 * 16.02372 * 8 6 5 10 10 Si 1.86807 * 119.99924 * 196.02335 * 8 6 5 11 11 H 1.48499 * 109.47076 * 59.99929 * 10 8 6 12 12 H 1.48494 * 109.47353 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46872 * 299.99900 * 10 8 6 14 14 C 1.52997 * 117.50318 * 304.15822 * 5 4 3 15 15 C 1.53001 * 60.03092 * 252.49734 * 14 5 4 16 16 C 1.40023 * 110.99617 * 288.56413 * 3 2 1 17 17 C 1.38666 * 120.09236 * 295.76800 * 16 3 2 18 18 C 1.38264 * 119.99160 * 179.75296 * 17 16 3 19 19 C 1.38255 * 120.19921 * 0.54645 * 18 17 16 20 20 C 1.38266 * 120.18757 * 359.70663 * 19 18 17 21 21 C 1.38661 * 120.00332 * 0.02562 * 20 19 18 22 22 N 1.40015 * 120.09597 * 180.02562 * 21 20 19 23 23 H 1.09000 * 109.46827 * 65.68693 * 1 2 3 24 24 H 1.08993 * 109.47479 * 185.69388 * 1 2 3 25 25 H 1.09005 * 109.46837 * 305.69169 * 1 2 3 26 26 H 1.08999 * 109.47195 * 239.99531 * 2 1 3 27 27 H 1.09001 * 109.47098 * 119.99897 * 2 1 3 28 28 H 1.09000 * 109.46891 * 167.25355 * 4 3 2 29 29 H 1.09000 * 109.47345 * 47.25340 * 4 3 2 30 30 H 0.97003 * 119.99767 * 184.97457 * 9 8 6 31 31 H 1.08998 * 117.49703 * 359.97438 * 14 5 4 32 32 H 1.08993 * 117.50229 * 144.99769 * 14 5 4 33 33 H 1.09004 * 117.50207 * 107.49970 * 15 14 5 34 34 H 1.09003 * 117.50105 * 252.51969 * 15 14 5 35 35 H 1.08004 * 120.00147 * 0.02562 * 17 16 3 36 36 H 1.08006 * 119.90085 * 180.25494 * 18 17 16 37 37 H 1.07997 * 119.90407 * 179.72680 * 19 18 17 38 38 H 1.08002 * 120.00091 * 179.97438 * 20 19 18 39 39 H 0.97006 * 119.99442 * 179.97438 * 22 21 20 40 40 H 0.96997 * 120.00396 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4419 1.4405 0.3640 5 6 3.5971 1.1559 1.8593 6 6 3.7786 -0.2937 2.2294 7 1 3.2920 -0.6917 3.1077 8 6 4.5659 -1.1116 1.4471 9 7 5.4010 -0.5852 0.5782 10 14 4.4462 -2.9677 1.6212 11 1 3.0603 -3.4052 1.3162 12 1 5.3898 -3.6155 0.6751 13 1 4.7939 -3.3579 3.0112 14 6 2.8148 2.0407 2.8318 15 6 4.3313 2.1991 2.7052 16 6 1.7947 1.9968 -1.2392 17 6 2.4301 1.5198 -2.3757 18 6 2.2023 2.1223 -3.5992 19 6 1.3507 3.2074 -3.6922 20 6 0.7170 3.6927 -2.5632 21 6 0.9353 3.0912 -1.3330 22 7 0.2942 3.5808 -0.1886 23 1 -0.3633 0.4231 -0.9365 24 1 -0.3634 -1.0225 0.1019 25 1 -0.3633 0.5996 0.8347 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8358 2.4319 0.1400 29 1 3.9926 0.6932 -0.2073 30 1 5.9019 -1.1592 -0.0223 31 1 2.1899 2.8260 2.4065 32 1 2.4315 1.5746 3.7394 33 1 4.7038 3.0882 2.1966 34 1 4.9458 1.8367 3.5294 35 1 3.0994 0.6751 -2.3059 36 1 2.6949 1.7470 -4.4841 37 1 1.1797 3.6771 -4.6496 38 1 0.0527 4.5408 -2.6393 39 1 0.4477 3.1586 0.6712 40 1 -0.3033 4.3419 -0.2554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088255660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:10 Heat of formation + Delta-G solvation = 58.182885 kcal Electronic energy + Delta-G solvation = -20394.863853 eV Core-core repulsion = 17596.169365 eV Total energy + Delta-G solvation = -2798.694488 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.51277 -37.07507 -34.93304 -33.93496 -32.20992 -30.43850 -28.98146 -27.77750 -25.74307 -24.31275 -22.68638 -21.45705 -21.02330 -20.05675 -18.75235 -16.83330 -16.40892 -16.06627 -15.48089 -14.81597 -14.25634 -14.09401 -13.90283 -13.55056 -13.36083 -12.94944 -12.71042 -12.41328 -12.03324 -11.63504 -11.43943 -11.18126 -10.96959 -10.90299 -10.74680 -10.58219 -10.32236 -10.22849 -10.16954 -10.04092 -9.33043 -8.93731 -8.61620 -8.26872 -8.10961 -7.42125 -6.98460 -6.11366 -4.09218 1.82747 2.08334 3.25235 3.32068 3.35027 4.30340 4.35193 4.36340 4.66134 5.02370 5.32948 5.48955 5.65631 5.70459 5.86970 5.92696 5.97164 6.11174 6.22433 6.31393 6.33039 6.47476 6.54629 6.62711 6.65294 6.77157 6.83339 6.86437 6.94439 7.02305 7.06840 7.16887 7.25331 7.32271 7.45827 7.56342 7.83751 7.88987 8.07962 8.29718 8.43435 8.46761 8.86637 9.46670 10.91515 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021118 B = 0.007524 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.542415 B = 3720.507695 C = 4106.454782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.052 3.948 3 N -0.495 5.495 4 C 0.093 3.907 5 C 0.061 3.939 6 C -0.484 4.484 7 H 0.059 0.941 8 C 0.071 3.929 9 N -0.870 5.870 10 Si 0.877 3.123 11 H -0.274 1.274 12 H -0.287 1.287 13 H -0.276 1.276 14 C -0.190 4.190 15 C -0.204 4.204 16 C 0.034 3.966 17 C -0.102 4.102 18 C -0.176 4.176 19 C -0.088 4.088 20 C -0.207 4.207 21 C 0.234 3.766 22 N -0.869 5.869 23 H 0.040 0.960 24 H 0.047 0.953 25 H 0.055 0.945 26 H 0.022 0.978 27 H 0.109 0.891 28 H 0.036 0.964 29 H 0.088 0.912 30 H 0.261 0.739 31 H 0.069 0.931 32 H 0.068 0.932 33 H 0.060 0.940 34 H 0.074 0.926 35 H 0.118 0.882 36 H 0.110 0.890 37 H 0.112 0.888 38 H 0.113 0.887 39 H 0.408 0.592 40 H 0.387 0.613 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.543 5.469 -5.345 11.466 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.075 4.075 3 N -0.216 5.216 4 C -0.032 4.032 5 C 0.060 3.940 6 C -0.521 4.521 7 H 0.078 0.922 8 C -0.131 4.131 9 N -0.507 5.507 10 Si 0.704 3.296 11 H -0.199 1.199 12 H -0.213 1.213 13 H -0.201 1.201 14 C -0.228 4.228 15 C -0.242 4.242 16 C -0.064 4.064 17 C -0.123 4.123 18 C -0.197 4.197 19 C -0.107 4.107 20 C -0.231 4.231 21 C 0.127 3.873 22 N -0.408 5.408 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.074 0.926 26 H 0.040 0.960 27 H 0.127 0.873 28 H 0.055 0.945 29 H 0.106 0.894 30 H 0.071 0.929 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.092 0.908 35 H 0.136 0.864 36 H 0.128 0.872 37 H 0.130 0.870 38 H 0.131 0.869 39 H 0.239 0.761 40 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -8.576 5.630 -5.075 11.445 hybrid contribution 0.363 -1.187 -0.299 1.277 sum -8.212 4.443 -5.374 10.773 Atomic orbital electron populations 1.21730 0.96776 1.00289 1.00977 1.22308 0.93942 0.88455 1.02756 1.59612 1.20856 1.17207 1.23946 1.21845 0.84196 0.99886 0.97271 1.18840 0.96339 0.90705 0.88073 1.20549 1.28015 0.92578 1.10928 0.92237 1.24910 0.93734 0.98343 0.96146 1.70013 1.23295 1.35236 1.22136 0.86897 0.78191 0.86348 0.78200 1.19926 1.21251 1.20135 1.22644 0.93287 1.04438 1.02403 1.22983 0.93521 1.02416 1.05320 1.18554 1.00128 0.97320 0.90436 1.21568 0.98420 0.99431 0.92845 1.20718 1.02694 0.99078 0.97223 1.20717 0.96502 0.96187 0.97255 1.20399 1.07054 1.03864 0.91748 1.17656 0.91056 0.91528 0.87038 1.42479 1.52171 1.37346 1.08806 0.94090 0.93382 0.92553 0.95983 0.87254 0.94510 0.89388 0.92863 0.91233 0.91315 0.92120 0.90773 0.86378 0.87226 0.87029 0.86916 0.76084 0.78594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.88 37.16 0.37 -1.99 16 2 C 0.05 1.03 5.44 -3.82 -0.02 1.01 16 3 N -0.49 -9.73 3.37 -170.89 -0.58 -10.31 16 4 C 0.09 2.13 4.26 -3.82 -0.02 2.12 16 5 C 0.06 1.46 1.60 -155.62 -0.25 1.21 16 6 C -0.48 -12.50 6.95 -34.44 -0.24 -12.74 16 7 H 0.06 1.55 7.87 -52.48 -0.41 1.14 16 8 C 0.07 1.85 5.03 -17.82 -0.09 1.76 16 9 N -0.87 -23.37 11.13 55.43 0.62 -22.76 16 10 Si 0.88 20.16 29.57 -169.99 -5.03 15.13 16 11 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 12 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 13 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 14 C -0.19 -4.07 9.74 -26.73 -0.26 -4.33 16 15 C -0.20 -4.68 9.89 -26.69 -0.26 -4.94 16 16 C 0.03 0.63 3.87 -83.50 -0.32 0.30 16 17 C -0.10 -1.85 8.54 -39.41 -0.34 -2.19 16 18 C -0.18 -2.76 10.04 -39.57 -0.40 -3.16 16 19 C -0.09 -1.25 10.04 -39.56 -0.40 -1.65 16 20 C -0.21 -2.99 9.89 -39.41 -0.39 -3.38 16 21 C 0.23 3.78 6.78 -83.50 -0.57 3.22 16 22 N -0.87 -12.05 9.09 32.54 0.30 -11.75 16 23 H 0.04 0.68 7.73 -51.93 -0.40 0.28 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 26 H 0.02 0.45 7.06 -51.93 -0.37 0.09 16 27 H 0.11 2.46 5.48 -51.93 -0.28 2.18 16 28 H 0.04 0.87 7.70 -51.93 -0.40 0.47 16 29 H 0.09 2.24 4.95 -51.93 -0.26 1.98 16 30 H 0.26 6.77 8.32 -40.82 -0.34 6.43 16 31 H 0.07 1.39 8.14 -51.93 -0.42 0.96 16 32 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 33 H 0.06 1.34 8.04 -51.93 -0.42 0.92 16 34 H 0.07 1.73 8.14 -51.93 -0.42 1.31 16 35 H 0.12 2.28 7.30 -52.48 -0.38 1.90 16 36 H 0.11 1.50 8.06 -52.48 -0.42 1.08 16 37 H 0.11 1.28 8.06 -52.49 -0.42 0.85 16 38 H 0.11 1.35 8.06 -52.49 -0.42 0.93 16 39 H 0.41 6.11 8.11 -40.82 -0.33 5.77 16 40 H 0.39 4.21 8.85 -40.82 -0.36 3.85 16 LS Contribution 322.70 15.07 4.86 4.86 Total: -1.00 -26.42 322.70 -9.14 -35.56 By element: Atomic # 1 Polarization: 20.14 SS G_CDS: -6.13 Total: 14.00 kcal Atomic # 6 Polarization: -21.56 SS G_CDS: -3.18 Total: -24.74 kcal Atomic # 7 Polarization: -45.15 SS G_CDS: 0.34 Total: -44.81 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.03 Total: 15.13 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -26.42 -9.14 -35.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.745 kcal (2) G-P(sol) polarization free energy of solvation -26.422 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.323 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.562 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds