Wall clock time and date at job start Mon Mar 30 2020 06:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46906 * 109.47403 * 2 1 4 4 C 1.46899 * 110.99877 * 164.60976 * 3 2 1 5 5 C 1.53004 * 109.46899 * 287.24995 * 4 3 2 6 6 C 1.50703 * 115.54413 * 89.82622 * 5 4 3 7 7 H 1.08005 * 119.99759 * 219.61097 * 6 5 4 8 8 C 1.37874 * 120.00070 * 39.61709 * 6 5 4 9 9 N 1.31515 * 120.00275 * 16.02372 * 8 6 5 10 10 Si 1.86807 * 119.99924 * 196.02335 * 8 6 5 11 11 H 1.48499 * 109.47076 * 59.99929 * 10 8 6 12 12 H 1.48494 * 109.47353 * 180.02562 * 10 8 6 13 13 H 1.48506 * 109.46872 * 299.99900 * 10 8 6 14 14 C 1.52997 * 117.50318 * 304.15822 * 5 4 3 15 15 C 1.53001 * 60.03092 * 252.49734 * 14 5 4 16 16 C 1.40023 * 110.99617 * 288.56413 * 3 2 1 17 17 C 1.38666 * 120.09236 * 295.76800 * 16 3 2 18 18 C 1.38264 * 119.99160 * 179.75296 * 17 16 3 19 19 C 1.38255 * 120.19921 * 0.54645 * 18 17 16 20 20 C 1.38266 * 120.18757 * 359.70663 * 19 18 17 21 21 C 1.38661 * 120.00332 * 0.02562 * 20 19 18 22 22 N 1.40015 * 120.09597 * 180.02562 * 21 20 19 23 23 H 1.09000 * 109.46827 * 65.68693 * 1 2 3 24 24 H 1.08993 * 109.47479 * 185.69388 * 1 2 3 25 25 H 1.09005 * 109.46837 * 305.69169 * 1 2 3 26 26 H 1.08999 * 109.47195 * 239.99531 * 2 1 3 27 27 H 1.09001 * 109.47098 * 119.99897 * 2 1 3 28 28 H 1.09000 * 109.46891 * 167.25355 * 4 3 2 29 29 H 1.09000 * 109.47345 * 47.25340 * 4 3 2 30 30 H 0.97003 * 119.99767 * 184.97457 * 9 8 6 31 31 H 1.08998 * 117.49703 * 359.97438 * 14 5 4 32 32 H 1.08993 * 117.50229 * 144.99769 * 14 5 4 33 33 H 1.09004 * 117.50207 * 107.49970 * 15 14 5 34 34 H 1.09003 * 117.50105 * 252.51969 * 15 14 5 35 35 H 1.08004 * 120.00147 * 0.02562 * 17 16 3 36 36 H 1.08006 * 119.90085 * 180.25494 * 18 17 16 37 37 H 1.07997 * 119.90407 * 179.72680 * 19 18 17 38 38 H 1.08002 * 120.00091 * 179.97438 * 20 19 18 39 39 H 0.97006 * 119.99442 * 179.97438 * 22 21 20 40 40 H 0.96997 * 120.00396 * 359.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4419 1.4405 0.3640 5 6 3.5971 1.1559 1.8593 6 6 3.7786 -0.2937 2.2294 7 1 3.2920 -0.6917 3.1077 8 6 4.5659 -1.1116 1.4471 9 7 5.4010 -0.5852 0.5782 10 14 4.4462 -2.9677 1.6212 11 1 3.0603 -3.4052 1.3162 12 1 5.3898 -3.6155 0.6751 13 1 4.7939 -3.3579 3.0112 14 6 2.8148 2.0407 2.8318 15 6 4.3313 2.1991 2.7052 16 6 1.7947 1.9968 -1.2392 17 6 2.4301 1.5198 -2.3757 18 6 2.2023 2.1223 -3.5992 19 6 1.3507 3.2074 -3.6922 20 6 0.7170 3.6927 -2.5632 21 6 0.9353 3.0912 -1.3330 22 7 0.2942 3.5808 -0.1886 23 1 -0.3633 0.4231 -0.9365 24 1 -0.3634 -1.0225 0.1019 25 1 -0.3633 0.5996 0.8347 26 1 1.8934 -0.5139 -0.8899 27 1 1.8933 -0.5138 0.8900 28 1 3.8358 2.4319 0.1400 29 1 3.9926 0.6932 -0.2073 30 1 5.9019 -1.1592 -0.0223 31 1 2.1899 2.8260 2.4065 32 1 2.4315 1.5746 3.7394 33 1 4.7038 3.0882 2.1966 34 1 4.9458 1.8367 3.5294 35 1 3.0994 0.6751 -2.3059 36 1 2.6949 1.7470 -4.4841 37 1 1.1797 3.6771 -4.6496 38 1 0.0527 4.5408 -2.6393 39 1 0.4477 3.1586 0.6712 40 1 -0.3033 4.3419 -0.2554 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255660.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:09 Heat of formation + Delta-G solvation = 44.441207 kcal Electronic energy + Delta-G solvation = -20395.459737 eV Core-core repulsion = 17596.169365 eV Total energy + Delta-G solvation = -2799.290372 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.87824 -38.70702 -36.51005 -35.10873 -34.19937 -31.85366 -30.33129 -29.08994 -27.68338 -25.96778 -24.07038 -22.87400 -22.69100 -21.52368 -20.55992 -18.20716 -17.96820 -17.50213 -16.81121 -16.70400 -15.90785 -15.68220 -15.31511 -14.98576 -14.63563 -14.50725 -14.30792 -13.70859 -13.63005 -13.47898 -12.95202 -12.82191 -12.65073 -12.38677 -12.33448 -12.20085 -12.02167 -11.97487 -11.64298 -11.36287 -11.15289 -10.84742 -10.48776 -10.02861 -9.51162 -9.07771 -8.18489 -8.09425 -6.12821 0.56760 0.85138 1.39355 1.42804 1.48378 2.42114 2.98659 3.06138 3.14191 3.29719 3.82246 4.14762 4.27507 4.31907 4.39919 4.55690 4.63294 4.64240 4.73537 4.77020 4.84746 4.91115 5.04976 5.05393 5.12213 5.16355 5.23916 5.31056 5.34906 5.49093 5.51023 5.60620 5.65685 5.73715 5.83084 5.93880 6.10874 6.35503 6.48541 6.61618 6.86374 6.99860 7.26222 7.44529 8.91028 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.021118 B = 0.007524 C = 0.006817 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1325.542415 B = 3720.507695 C = 4106.454782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.054 3.946 3 N -0.478 5.478 4 C 0.110 3.890 5 C 0.037 3.963 6 C -0.493 4.493 7 H 0.052 0.948 8 C 0.035 3.965 9 N -0.895 5.895 10 Si 0.928 3.072 11 H -0.267 1.267 12 H -0.288 1.288 13 H -0.274 1.274 14 C -0.162 4.162 15 C -0.211 4.211 16 C 0.000 4.000 17 C -0.122 4.122 18 C -0.185 4.185 19 C -0.078 4.078 20 C -0.202 4.202 21 C 0.230 3.770 22 N -0.860 5.860 23 H 0.044 0.956 24 H 0.060 0.940 25 H 0.063 0.937 26 H 0.003 0.997 27 H 0.082 0.918 28 H 0.021 0.979 29 H 0.058 0.942 30 H 0.259 0.741 31 H 0.088 0.912 32 H 0.073 0.927 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.125 0.875 37 H 0.148 0.852 38 H 0.146 0.854 39 H 0.404 0.596 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.690 6.769 -6.067 14.032 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.072 4.072 3 N -0.199 5.199 4 C -0.016 4.016 5 C 0.036 3.964 6 C -0.530 4.530 7 H 0.070 0.930 8 C -0.165 4.165 9 N -0.533 5.533 10 Si 0.753 3.247 11 H -0.193 1.193 12 H -0.214 1.214 13 H -0.199 1.199 14 C -0.200 4.200 15 C -0.250 4.250 16 C -0.099 4.099 17 C -0.143 4.143 18 C -0.205 4.205 19 C -0.096 4.096 20 C -0.226 4.226 21 C 0.122 3.878 22 N -0.399 5.399 23 H 0.063 0.937 24 H 0.079 0.921 25 H 0.082 0.918 26 H 0.021 0.979 27 H 0.100 0.900 28 H 0.040 0.960 29 H 0.076 0.924 30 H 0.068 0.932 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.107 0.893 36 H 0.143 0.857 37 H 0.166 0.834 38 H 0.164 0.836 39 H 0.233 0.767 40 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -10.752 6.949 -5.787 14.049 hybrid contribution 1.022 -1.523 -0.124 1.838 sum -9.730 5.426 -5.910 12.611 Atomic orbital electron populations 1.21593 0.93970 1.01354 1.01399 1.22210 0.96137 0.88473 1.00418 1.59582 1.18344 1.16806 1.25187 1.21474 0.86094 0.97712 0.96334 1.18922 0.98195 0.90232 0.89014 1.20720 1.27672 0.93915 1.10723 0.93022 1.25450 0.93507 1.01570 0.96004 1.70120 1.24080 1.36231 1.22888 0.86084 0.78266 0.82341 0.77967 1.19251 1.21396 1.19898 1.22616 0.92295 1.03536 1.01513 1.22965 0.94763 1.02317 1.04949 1.18667 1.02444 0.99077 0.89676 1.21490 0.98921 0.99472 0.94380 1.20936 1.03301 0.99657 0.96642 1.21140 0.94697 0.94921 0.98874 1.20807 1.06777 1.04179 0.90807 1.17778 0.90666 0.90829 0.88487 1.42428 1.51952 1.37632 1.07899 0.93717 0.92068 0.91821 0.97877 0.89974 0.96034 0.92390 0.93155 0.89406 0.90855 0.91628 0.91755 0.89254 0.85729 0.83401 0.83599 0.76652 0.76644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -4.08 9.88 71.98 0.71 -3.37 16 2 C 0.05 2.21 5.44 86.30 0.47 2.68 16 3 N -0.48 -19.01 3.37 -694.57 -2.34 -21.35 16 4 C 0.11 5.21 4.26 86.30 0.37 5.58 16 5 C 0.04 1.80 1.60 -52.90 -0.08 1.72 16 6 C -0.49 -26.04 6.95 25.60 0.18 -25.86 16 7 H 0.05 2.74 7.87 -2.91 -0.02 2.72 16 8 C 0.04 1.87 5.03 84.65 0.43 2.29 16 9 N -0.90 -49.91 11.13 21.45 0.24 -49.67 16 10 Si 0.93 42.21 29.57 68.60 2.03 44.24 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 12 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 13 H -0.27 -12.28 7.11 99.48 0.71 -11.57 16 14 C -0.16 -6.81 9.74 30.59 0.30 -6.51 16 15 C -0.21 -9.77 9.89 30.62 0.30 -9.46 16 16 C 0.00 -0.01 3.87 38.23 0.15 0.14 16 17 C -0.12 -4.52 8.54 22.38 0.19 -4.33 16 18 C -0.18 -5.55 10.04 22.28 0.22 -5.33 16 19 C -0.08 -1.94 10.04 22.28 0.22 -1.72 16 20 C -0.20 -5.09 9.89 22.38 0.22 -4.87 16 21 C 0.23 6.94 6.78 38.23 0.26 7.20 16 22 N -0.86 -21.51 9.09 -50.97 -0.46 -21.98 16 23 H 0.04 1.41 7.73 -2.39 -0.02 1.39 16 24 H 0.06 1.81 8.14 -2.39 -0.02 1.79 16 25 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 26 H 0.00 0.13 7.06 -2.39 -0.02 0.11 16 27 H 0.08 3.79 5.48 -2.39 -0.01 3.78 16 28 H 0.02 1.04 7.70 -2.39 -0.02 1.02 16 29 H 0.06 3.11 4.95 -2.39 -0.01 3.10 16 30 H 0.26 13.96 8.32 -92.71 -0.77 13.19 16 31 H 0.09 3.34 8.14 -2.39 -0.02 3.33 16 32 H 0.07 3.00 8.14 -2.39 -0.02 2.98 16 33 H 0.07 2.92 8.04 -2.38 -0.02 2.90 16 34 H 0.06 3.05 8.14 -2.39 -0.02 3.03 16 35 H 0.09 3.73 7.30 -2.91 -0.02 3.71 16 36 H 0.12 3.26 8.06 -2.91 -0.02 3.24 16 37 H 0.15 2.63 8.06 -2.91 -0.02 2.61 16 38 H 0.15 2.71 8.06 -2.91 -0.02 2.68 16 39 H 0.40 11.15 8.11 -92.70 -0.75 10.40 16 40 H 0.40 7.35 8.85 -92.71 -0.82 6.53 16 Total: -1.00 -58.05 322.70 2.87 -55.18 By element: Atomic # 1 Polarization: 35.95 SS G_CDS: -0.53 Total: 35.42 kcal Atomic # 6 Polarization: -45.77 SS G_CDS: 3.94 Total: -41.83 kcal Atomic # 7 Polarization: -90.44 SS G_CDS: -2.57 Total: -93.00 kcal Atomic # 14 Polarization: 42.21 SS G_CDS: 2.03 Total: 44.24 kcal Total: -58.05 2.87 -55.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255660.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 99.624 kcal (2) G-P(sol) polarization free energy of solvation -58.048 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.575 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.182 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds