Wall clock time and date at job start Mon Mar 30 2020 06:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46607 * 2 1 4 4 C 1.46504 * 120.00085 * 274.31168 * 3 2 1 5 5 C 1.53004 * 109.47152 * 275.79612 * 4 3 2 6 6 C 1.50703 * 115.54623 * 294.95638 * 5 4 3 7 7 H 1.08007 * 119.99242 * 94.77757 * 6 5 4 8 8 C 1.37875 * 120.00214 * 274.77584 * 6 5 4 9 9 N 1.31509 * 120.00282 * 5.08852 * 8 6 5 10 10 Si 1.86796 * 119.99868 * 185.08818 * 8 6 5 11 11 H 1.48500 * 109.47199 * 60.00225 * 10 8 6 12 12 H 1.48499 * 109.47323 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47458 * 300.00169 * 10 8 6 14 14 C 1.52996 * 117.50028 * 149.29517 * 5 4 3 15 15 C 1.52997 * 117.50246 * 80.63195 * 5 4 3 16 16 C 1.39994 * 120.00396 * 94.31726 * 3 2 1 17 17 C 1.38860 * 120.00571 * 174.78734 * 16 3 2 18 18 C 1.38093 * 120.00265 * 180.25520 * 17 16 3 19 19 C 1.38858 * 120.00048 * 359.49325 * 18 17 16 20 20 N 1.39999 * 120.00208 * 180.23149 * 19 18 17 21 21 C 1.38854 * 119.99839 * 0.25855 * 19 18 17 22 22 C 1.38101 * 120.00098 * 359.97438 * 21 19 18 23 23 H 1.09005 * 109.47160 * 300.00257 * 1 2 3 24 24 H 1.08999 * 109.47058 * 60.00486 * 1 2 3 25 25 H 1.08999 * 109.46914 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46774 * 239.99948 * 2 1 3 27 27 H 1.08999 * 109.47058 * 119.99514 * 2 1 3 28 28 H 1.08999 * 109.46799 * 35.79298 * 4 3 2 29 29 H 1.08999 * 109.47190 * 155.78862 * 4 3 2 30 30 H 0.96997 * 120.00157 * 184.99609 * 9 8 6 31 31 H 1.09007 * 117.50008 * 359.97438 * 14 5 4 32 32 H 1.08999 * 117.50645 * 145.01539 * 14 5 4 33 33 H 1.08992 * 117.49949 * 214.97911 * 15 5 4 34 34 H 1.09000 * 117.49573 * 359.97438 * 15 5 4 35 35 H 1.08004 * 119.99810 * 0.02562 * 17 16 3 36 36 H 1.08004 * 119.99632 * 179.77632 * 18 17 16 37 37 H 0.97002 * 119.99842 * 0.02562 * 20 19 18 38 38 H 0.96992 * 120.00290 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.99990 * 180.02562 * 21 19 18 40 40 H 1.08003 * 119.99655 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1724 2.1037 -1.2652 5 6 3.5282 1.7611 -1.8861 6 6 4.7342 2.2149 -1.1046 7 1 5.2193 1.5365 -0.4182 8 6 5.2183 3.4957 -1.2658 9 7 4.5706 4.3529 -2.0242 10 14 6.7942 4.0135 -0.4069 11 1 7.9124 3.1478 -0.8601 12 1 7.0972 5.4287 -0.7394 13 1 6.6257 3.8759 1.0621 14 6 3.6297 1.7746 -3.4127 15 6 3.6400 0.4439 -2.6563 16 6 2.3376 2.0109 1.2089 17 6 2.9018 3.2797 1.2032 18 6 3.2216 3.8985 2.3955 19 6 2.9694 3.2564 3.6006 20 7 3.2891 3.8857 4.8096 21 6 2.4004 1.9897 3.6065 22 6 2.0850 1.3689 2.4140 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.3755 1.8124 -1.9493 29 1 2.1181 3.1764 -1.0799 30 1 4.9478 5.2298 -2.1962 31 1 2.7305 2.0271 -3.9747 32 1 4.5688 2.1112 -3.8518 33 1 4.5859 -0.0944 -2.5980 34 1 2.7478 -0.1790 -2.7202 35 1 3.0939 3.7810 0.2660 36 1 3.6638 4.8839 2.3909 37 1 3.6866 4.7706 4.8054 38 1 3.1126 3.4374 5.6513 39 1 2.2038 1.4905 4.5438 40 1 1.6428 0.3835 2.4186 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000088255675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:16 Heat of formation + Delta-G solvation = 59.041155 kcal Electronic energy + Delta-G solvation = -20211.827561 eV Core-core repulsion = 17413.170290 eV Total energy + Delta-G solvation = -2798.657271 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -38.98281 -37.09812 -35.29728 -33.02644 -31.85976 -30.67969 -29.63019 -27.29215 -25.65120 -24.69660 -22.41362 -21.60119 -21.00180 -19.98960 -18.84936 -16.85218 -16.34956 -15.86502 -15.46635 -14.57884 -14.54105 -14.09136 -13.89466 -13.25292 -12.96370 -12.81007 -12.56092 -12.45913 -12.10363 -11.83666 -11.55831 -11.25778 -11.03107 -10.89563 -10.76852 -10.61363 -10.43569 -10.27996 -10.14190 -9.85056 -9.54056 -8.74361 -8.43508 -8.10003 -8.06544 -7.87012 -5.98377 -5.85227 -3.99077 2.25918 2.63529 3.36199 3.39250 3.45776 4.08136 4.47840 4.49804 4.80374 5.31425 5.40713 5.44031 5.61786 5.71817 5.74112 5.83241 6.04444 6.14227 6.21291 6.24903 6.30927 6.38300 6.46397 6.52347 6.59611 6.66233 6.76962 6.86505 6.91763 7.04404 7.12522 7.22354 7.35199 7.47739 7.60135 7.62985 7.94763 8.11094 8.32604 8.35243 8.53983 8.61265 8.99400 9.63512 11.10074 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.010832 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.255852 B = 2584.302541 C = 4207.271524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.124 3.876 3 N -0.613 5.613 4 C 0.167 3.833 5 C 0.031 3.969 6 C -0.470 4.470 7 H 0.054 0.946 8 C 0.075 3.925 9 N -0.884 5.884 10 Si 0.875 3.125 11 H -0.280 1.280 12 H -0.289 1.289 13 H -0.272 1.272 14 C -0.156 4.156 15 C -0.212 4.212 16 C 0.191 3.809 17 C -0.114 4.114 18 C -0.154 4.154 19 C 0.141 3.859 20 N -0.895 5.895 21 C -0.163 4.163 22 C -0.170 4.170 23 H 0.054 0.946 24 H 0.052 0.948 25 H 0.052 0.948 26 H 0.067 0.933 27 H 0.065 0.935 28 H 0.035 0.965 29 H 0.080 0.920 30 H 0.259 0.741 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.148 0.852 36 H 0.107 0.893 37 H 0.389 0.611 38 H 0.387 0.613 39 H 0.104 0.896 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.067 -3.703 7.023 9.993 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.001 4.001 3 N -0.323 5.323 4 C 0.044 3.956 5 C 0.030 3.970 6 C -0.508 4.508 7 H 0.072 0.928 8 C -0.127 4.127 9 N -0.521 5.521 10 Si 0.702 3.298 11 H -0.206 1.206 12 H -0.215 1.215 13 H -0.197 1.197 14 C -0.195 4.195 15 C -0.249 4.249 16 C 0.089 3.911 17 C -0.137 4.137 18 C -0.176 4.176 19 C 0.040 3.960 20 N -0.437 5.437 21 C -0.186 4.186 22 C -0.194 4.194 23 H 0.073 0.927 24 H 0.071 0.929 25 H 0.071 0.929 26 H 0.086 0.914 27 H 0.083 0.917 28 H 0.054 0.946 29 H 0.098 0.902 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.098 0.902 33 H 0.091 0.909 34 H 0.079 0.921 35 H 0.166 0.834 36 H 0.125 0.875 37 H 0.215 0.785 38 H 0.213 0.787 39 H 0.122 0.878 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.158 -3.595 6.758 9.825 hybrid contribution 1.185 0.444 0.646 1.421 sum -4.973 -3.152 7.404 9.460 Atomic orbital electron populations 1.22254 0.97846 1.00730 1.02033 1.21193 0.92623 0.84323 1.01911 1.46333 1.70653 1.11921 1.03430 1.21000 0.94941 0.96639 0.83040 1.19362 0.94385 0.93353 0.89933 1.20255 1.10628 0.96616 1.23297 0.92789 1.24817 0.96399 0.96146 0.95312 1.69981 1.37118 1.06699 1.38344 0.86917 0.84595 0.77370 0.80877 1.20609 1.21458 1.19708 1.22492 1.00411 0.99166 0.97387 1.22963 0.99714 0.91644 1.10573 1.17599 0.95765 0.92280 0.85446 1.21005 0.99188 0.94629 0.98834 1.20354 1.05964 1.00282 0.91035 1.17532 0.99398 0.92972 0.86131 1.42237 1.75068 1.21580 1.04839 1.20057 1.06626 0.94782 0.97105 1.20300 1.07832 1.00277 0.90985 0.92730 0.92874 0.92868 0.91418 0.91713 0.94636 0.90208 0.93119 0.92115 0.90165 0.90857 0.92056 0.83441 0.87501 0.78463 0.78665 0.87753 0.87129 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.34 10.24 37.16 0.38 -1.96 16 2 C 0.12 2.01 5.89 -4.04 -0.02 1.99 16 3 N -0.61 -11.99 2.53 -171.68 -0.43 -12.43 16 4 C 0.17 3.57 5.15 -4.04 -0.02 3.55 16 5 C 0.03 0.73 1.57 -155.66 -0.24 0.49 16 6 C -0.47 -12.27 7.03 -34.44 -0.24 -12.52 16 7 H 0.05 1.50 7.82 -52.48 -0.41 1.09 16 8 C 0.08 1.98 4.49 -17.82 -0.08 1.90 16 9 N -0.88 -23.74 12.88 55.43 0.71 -23.03 16 10 Si 0.87 21.14 29.54 -169.99 -5.02 16.11 16 11 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 12 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 13 H -0.27 -6.64 7.11 56.52 0.40 -6.24 16 14 C -0.16 -3.55 9.39 -26.70 -0.25 -3.80 16 15 C -0.21 -4.50 9.38 -26.69 -0.25 -4.75 16 16 C 0.19 3.88 6.37 -83.67 -0.53 3.35 16 17 C -0.11 -2.48 8.16 -39.40 -0.32 -2.80 16 18 C -0.15 -3.04 9.89 -39.41 -0.39 -3.43 16 19 C 0.14 2.47 6.76 -83.67 -0.57 1.91 16 20 N -0.89 -12.17 9.10 32.45 0.30 -11.88 16 21 C -0.16 -2.77 9.89 -39.40 -0.39 -3.16 16 22 C -0.17 -3.08 9.17 -39.40 -0.36 -3.44 16 23 H 0.05 0.77 8.14 -51.93 -0.42 0.34 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.07 1.11 6.36 -51.93 -0.33 0.78 16 27 H 0.06 1.01 6.20 -51.93 -0.32 0.68 16 28 H 0.04 0.71 8.07 -51.93 -0.42 0.29 16 29 H 0.08 1.88 6.11 -51.93 -0.32 1.57 16 30 H 0.26 6.81 8.32 -40.82 -0.34 6.47 16 31 H 0.06 1.29 8.14 -51.93 -0.42 0.87 16 32 H 0.08 1.97 8.14 -51.93 -0.42 1.55 16 33 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 34 H 0.06 1.17 7.06 -51.93 -0.37 0.80 16 35 H 0.15 3.58 4.68 -52.48 -0.25 3.33 16 36 H 0.11 2.00 8.06 -52.48 -0.42 1.58 16 37 H 0.39 4.73 8.84 -40.82 -0.36 4.37 16 38 H 0.39 4.33 8.84 -40.82 -0.36 3.97 16 39 H 0.10 1.51 8.06 -52.49 -0.42 1.09 16 40 H 0.11 1.78 6.20 -52.48 -0.33 1.45 16 LS Contribution 322.20 15.07 4.86 4.86 Total: -1.00 -27.47 322.20 -8.86 -36.33 By element: Atomic # 1 Polarization: 18.68 SS G_CDS: -5.98 Total: 12.71 kcal Atomic # 6 Polarization: -19.38 SS G_CDS: -3.29 Total: -22.67 kcal Atomic # 7 Polarization: -47.91 SS G_CDS: 0.57 Total: -47.33 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -27.47 -8.86 -36.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 95.371 kcal (2) G-P(sol) polarization free energy of solvation -27.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.330 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds