Wall clock time and date at job start Mon Mar 30 2020 06:52:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.46607 * 2 1 4 4 C 1.46504 * 120.00085 * 274.31168 * 3 2 1 5 5 C 1.53004 * 109.47152 * 275.79612 * 4 3 2 6 6 C 1.50703 * 115.54623 * 294.95638 * 5 4 3 7 7 H 1.08007 * 119.99242 * 94.77757 * 6 5 4 8 8 C 1.37875 * 120.00214 * 274.77584 * 6 5 4 9 9 N 1.31509 * 120.00282 * 5.08852 * 8 6 5 10 10 Si 1.86796 * 119.99868 * 185.08818 * 8 6 5 11 11 H 1.48500 * 109.47199 * 60.00225 * 10 8 6 12 12 H 1.48499 * 109.47323 * 180.02562 * 10 8 6 13 13 H 1.48502 * 109.47458 * 300.00169 * 10 8 6 14 14 C 1.52996 * 117.50028 * 149.29517 * 5 4 3 15 15 C 1.52997 * 117.50246 * 80.63195 * 5 4 3 16 16 C 1.39994 * 120.00396 * 94.31726 * 3 2 1 17 17 C 1.38860 * 120.00571 * 174.78734 * 16 3 2 18 18 C 1.38093 * 120.00265 * 180.25520 * 17 16 3 19 19 C 1.38858 * 120.00048 * 359.49325 * 18 17 16 20 20 N 1.39999 * 120.00208 * 180.23149 * 19 18 17 21 21 C 1.38854 * 119.99839 * 0.25855 * 19 18 17 22 22 C 1.38101 * 120.00098 * 359.97438 * 21 19 18 23 23 H 1.09005 * 109.47160 * 300.00257 * 1 2 3 24 24 H 1.08999 * 109.47058 * 60.00486 * 1 2 3 25 25 H 1.08999 * 109.46914 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.46774 * 239.99948 * 2 1 3 27 27 H 1.08999 * 109.47058 * 119.99514 * 2 1 3 28 28 H 1.08999 * 109.46799 * 35.79298 * 4 3 2 29 29 H 1.08999 * 109.47190 * 155.78862 * 4 3 2 30 30 H 0.96997 * 120.00157 * 184.99609 * 9 8 6 31 31 H 1.09007 * 117.50008 * 359.97438 * 14 5 4 32 32 H 1.08999 * 117.50645 * 145.01539 * 14 5 4 33 33 H 1.08992 * 117.49949 * 214.97911 * 15 5 4 34 34 H 1.09000 * 117.49573 * 359.97438 * 15 5 4 35 35 H 1.08004 * 119.99810 * 0.02562 * 17 16 3 36 36 H 1.08004 * 119.99632 * 179.77632 * 18 17 16 37 37 H 0.97002 * 119.99842 * 0.02562 * 20 19 18 38 38 H 0.96992 * 120.00290 * 179.97438 * 20 19 18 39 39 H 1.07999 * 119.99990 * 180.02562 * 21 19 18 40 40 H 1.08003 * 119.99655 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.1724 2.1037 -1.2652 5 6 3.5282 1.7611 -1.8861 6 6 4.7342 2.2149 -1.1046 7 1 5.2193 1.5365 -0.4182 8 6 5.2183 3.4957 -1.2658 9 7 4.5706 4.3529 -2.0242 10 14 6.7942 4.0135 -0.4069 11 1 7.9124 3.1478 -0.8601 12 1 7.0972 5.4287 -0.7394 13 1 6.6257 3.8759 1.0621 14 6 3.6297 1.7746 -3.4127 15 6 3.6400 0.4439 -2.6563 16 6 2.3376 2.0109 1.2089 17 6 2.9018 3.2797 1.2032 18 6 3.2216 3.8985 2.3955 19 6 2.9694 3.2564 3.6006 20 7 3.2891 3.8857 4.8096 21 6 2.4004 1.9897 3.6065 22 6 2.0850 1.3689 2.4140 23 1 -0.3634 0.5139 0.8900 24 1 -0.3633 0.5138 -0.8900 25 1 -0.3633 -1.0277 0.0005 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 1.3755 1.8124 -1.9493 29 1 2.1181 3.1764 -1.0799 30 1 4.9478 5.2298 -2.1962 31 1 2.7305 2.0271 -3.9747 32 1 4.5688 2.1112 -3.8518 33 1 4.5859 -0.0944 -2.5980 34 1 2.7478 -0.1790 -2.7202 35 1 3.0939 3.7810 0.2660 36 1 3.6638 4.8839 2.3909 37 1 3.6866 4.7706 4.8054 38 1 3.1126 3.4374 5.6513 39 1 2.2038 1.4905 4.5438 40 1 1.6428 0.3835 2.4186 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000088255675.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:16 Heat of formation + Delta-G solvation = 44.683039 kcal Electronic energy + Delta-G solvation = -20212.450175 eV Core-core repulsion = 17413.170290 eV Total energy + Delta-G solvation = -2799.279886 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.44558 -38.70396 -36.83188 -34.37568 -33.81298 -32.07557 -30.99105 -28.78516 -27.53781 -26.25697 -23.77720 -23.08525 -22.70454 -21.52810 -20.57973 -18.27958 -17.97930 -17.38157 -16.85839 -16.57501 -15.95811 -15.75624 -15.32395 -14.90816 -14.41298 -14.29570 -13.99069 -13.84325 -13.57613 -13.36255 -13.11017 -12.92173 -12.83008 -12.56867 -12.47094 -12.32256 -12.04492 -11.86524 -11.66772 -11.35296 -11.20793 -10.65694 -10.38142 -9.88007 -9.55956 -9.29185 -8.02886 -7.26976 -6.04840 0.78831 1.18890 1.38102 1.40444 1.46172 2.46599 2.64228 3.27622 3.32134 3.35272 3.64115 4.15353 4.26252 4.34673 4.41128 4.53372 4.59783 4.67197 4.74349 4.79034 4.82791 4.93996 4.99825 5.03274 5.10968 5.15060 5.24266 5.31079 5.42550 5.49111 5.63375 5.67430 5.74884 5.75922 5.85737 5.90881 6.16170 6.51077 6.82307 6.91395 6.93013 7.15491 7.28537 7.57822 9.04821 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.013863 B = 0.010832 C = 0.006654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2019.255852 B = 2584.302541 C = 4207.271524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.119 3.881 3 N -0.618 5.618 4 C 0.181 3.819 5 C 0.010 3.990 6 C -0.469 4.469 7 H 0.031 0.969 8 C 0.046 3.954 9 N -0.901 5.901 10 Si 0.915 3.085 11 H -0.281 1.281 12 H -0.286 1.286 13 H -0.277 1.277 14 C -0.162 4.162 15 C -0.187 4.187 16 C 0.169 3.831 17 C -0.142 4.142 18 C -0.175 4.175 19 C 0.145 3.855 20 N -0.881 5.881 21 C -0.161 4.161 22 C -0.164 4.164 23 H 0.050 0.950 24 H 0.045 0.955 25 H 0.081 0.919 26 H 0.066 0.934 27 H 0.074 0.926 28 H 0.050 0.950 29 H 0.049 0.951 30 H 0.256 0.744 31 H 0.074 0.926 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.090 0.910 35 H 0.113 0.887 36 H 0.104 0.896 37 H 0.397 0.603 38 H 0.403 0.597 39 H 0.139 0.861 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.077 -5.411 8.706 12.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.004 4.004 3 N -0.330 5.330 4 C 0.057 3.943 5 C 0.009 3.991 6 C -0.508 4.508 7 H 0.049 0.951 8 C -0.154 4.154 9 N -0.540 5.540 10 Si 0.742 3.258 11 H -0.207 1.207 12 H -0.211 1.211 13 H -0.202 1.202 14 C -0.200 4.200 15 C -0.224 4.224 16 C 0.067 3.933 17 C -0.165 4.165 18 C -0.199 4.199 19 C 0.042 3.958 20 N -0.424 5.424 21 C -0.184 4.184 22 C -0.187 4.187 23 H 0.069 0.931 24 H 0.064 0.936 25 H 0.100 0.900 26 H 0.084 0.916 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.085 0.915 34 H 0.109 0.891 35 H 0.131 0.869 36 H 0.122 0.878 37 H 0.224 0.776 38 H 0.232 0.768 39 H 0.157 0.843 40 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.165 -5.311 8.482 12.308 hybrid contribution 1.509 0.961 0.212 1.802 sum -5.655 -4.350 8.694 11.246 Atomic orbital electron populations 1.22146 0.95708 1.02395 1.01516 1.21395 0.94270 0.82417 1.02277 1.46366 1.71107 1.13032 1.02446 1.20636 0.94140 0.95275 0.84217 1.19442 0.94483 0.95241 0.89968 1.20265 1.11421 0.96197 1.22878 0.95053 1.25184 0.98093 0.96279 0.95836 1.70045 1.37796 1.06683 1.39465 0.86291 0.82552 0.77126 0.79802 1.20689 1.21119 1.20249 1.22407 0.99795 1.00632 0.97152 1.22935 1.00634 0.90894 1.07956 1.17785 0.96671 0.92208 0.86608 1.20826 1.01604 0.95895 0.98152 1.20422 1.07074 1.00635 0.91722 1.17611 0.98457 0.93216 0.86530 1.42168 1.74162 1.21862 1.04256 1.20460 1.05277 0.94433 0.98209 1.20595 1.06791 1.01000 0.90346 0.93064 0.93582 0.90024 0.91578 0.90774 0.93205 0.93275 0.93452 0.90720 0.92669 0.91506 0.89136 0.86870 0.87782 0.77564 0.76832 0.84317 0.84770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.91 10.24 71.98 0.74 -3.17 16 2 C 0.12 3.60 5.89 86.38 0.51 4.11 16 3 N -0.62 -23.81 2.53 -697.06 -1.77 -25.58 16 4 C 0.18 7.84 5.15 86.38 0.44 8.28 16 5 C 0.01 0.48 1.57 -52.93 -0.08 0.40 16 6 C -0.47 -25.12 7.03 25.60 0.18 -24.94 16 7 H 0.03 1.78 7.82 -2.91 -0.02 1.76 16 8 C 0.05 2.49 4.49 84.65 0.38 2.87 16 9 N -0.90 -50.04 12.88 21.45 0.28 -49.76 16 10 Si 0.91 44.39 29.54 68.60 2.03 46.42 16 11 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 12 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 13 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 14 C -0.16 -7.36 9.39 30.62 0.29 -7.07 16 15 C -0.19 -7.74 9.38 30.62 0.29 -7.45 16 16 C 0.17 6.82 6.37 38.13 0.24 7.06 16 17 C -0.14 -6.35 8.16 22.38 0.18 -6.17 16 18 C -0.18 -7.01 9.89 22.38 0.22 -6.79 16 19 C 0.15 4.83 6.76 38.13 0.26 5.09 16 20 N -0.88 -21.69 9.10 -51.23 -0.47 -22.16 16 21 C -0.16 -5.00 9.89 22.38 0.22 -4.78 16 22 C -0.16 -5.56 9.17 22.39 0.21 -5.36 16 23 H 0.05 1.29 8.14 -2.38 -0.02 1.27 16 24 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.08 1.54 8.14 -2.39 -0.02 1.53 16 26 H 0.07 2.00 6.36 -2.39 -0.02 1.98 16 27 H 0.07 2.08 6.20 -2.39 -0.01 2.07 16 28 H 0.05 1.96 8.07 -2.39 -0.02 1.95 16 29 H 0.05 2.42 6.11 -2.39 -0.01 2.41 16 30 H 0.26 13.91 8.32 -92.71 -0.77 13.14 16 31 H 0.07 3.15 8.14 -2.38 -0.02 3.13 16 32 H 0.05 2.76 8.14 -2.39 -0.02 2.74 16 33 H 0.07 2.84 8.14 -2.39 -0.02 2.82 16 34 H 0.09 3.21 7.06 -2.39 -0.02 3.19 16 35 H 0.11 5.82 4.68 -2.91 -0.01 5.81 16 36 H 0.10 4.03 8.06 -2.91 -0.02 4.01 16 37 H 0.40 8.83 8.84 -92.71 -0.82 8.01 16 38 H 0.40 7.59 8.84 -92.71 -0.82 6.77 16 39 H 0.14 3.35 8.06 -2.91 -0.02 3.32 16 40 H 0.13 3.83 6.20 -2.91 -0.02 3.82 16 Total: -1.00 -60.27 322.20 3.55 -56.72 By element: Atomic # 1 Polarization: 32.87 SS G_CDS: -0.59 Total: 32.28 kcal Atomic # 6 Polarization: -41.99 SS G_CDS: 4.07 Total: -37.91 kcal Atomic # 7 Polarization: -95.55 SS G_CDS: -1.96 Total: -97.50 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -60.27 3.55 -56.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000088255675.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.399 kcal (2) G-P(sol) polarization free energy of solvation -60.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.555 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.716 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds