Wall clock time and date at job start Mon Mar 30 2020 06:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46896 * 109.47206 * 2 1 4 4 C 1.46902 * 111.00192 * 70.01179 * 3 2 1 5 5 C 1.50695 * 109.47386 * 69.50612 * 4 3 2 6 6 H 1.08000 * 119.99765 * 355.19610 * 5 4 3 7 7 C 1.37869 * 120.00149 * 175.19524 * 5 4 3 8 8 N 1.31512 * 120.00473 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00062 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47234 * 89.99915 * 9 7 5 11 11 H 1.48496 * 109.47290 * 209.99902 * 9 7 5 12 12 H 1.48501 * 109.47063 * 329.99827 * 9 7 5 13 13 C 1.46904 * 111.00005 * 306.05807 * 3 2 1 14 14 H 1.08993 * 110.27049 * 61.72686 * 13 3 2 15 15 C 1.54340 * 110.29865 * 299.65065 * 13 3 2 16 16 C 1.54596 * 102.28461 * 267.42451 * 15 13 3 17 17 C 1.51389 * 105.18563 * 333.61826 * 16 15 13 18 18 C 1.38373 * 130.31735 * 197.19797 * 17 16 15 19 19 C 1.38773 * 120.15561 * 180.02562 * 18 17 16 20 20 N 1.39670 * 120.11429 * 180.02562 * 19 18 17 21 21 C 1.38931 * 119.77509 * 359.97438 * 19 18 17 22 22 C 1.37956 * 119.85675 * 359.97438 * 21 19 18 23 23 C 1.38278 * 109.75297 * 17.21060 * 17 16 15 24 24 H 1.08999 * 109.47079 * 65.43544 * 1 2 3 25 25 H 1.08994 * 109.46992 * 185.43953 * 1 2 3 26 26 H 1.09000 * 109.46967 * 305.43864 * 1 2 3 27 27 H 1.08998 * 109.47009 * 239.99587 * 2 1 3 28 28 H 1.08996 * 109.47155 * 119.99832 * 2 1 3 29 29 H 1.09002 * 109.47110 * 189.50685 * 4 3 2 30 30 H 1.09007 * 109.47211 * 309.50671 * 4 3 2 31 31 H 0.96993 * 120.00676 * 179.97438 * 8 7 5 32 32 H 1.08997 * 110.82208 * 25.68861 * 15 13 3 33 33 H 1.09007 * 110.81807 * 149.22686 * 15 13 3 34 34 H 1.08998 * 110.28374 * 214.69181 * 16 15 13 35 35 H 1.09001 * 110.30351 * 92.54534 * 16 15 13 36 36 H 1.07997 * 119.92435 * 359.97438 * 18 17 16 37 37 H 0.97000 * 120.00194 * 179.97438 * 20 19 18 38 38 H 0.96998 * 120.00123 * 359.97438 * 20 19 18 39 39 H 1.07997 * 120.07331 * 180.02562 * 21 19 18 40 40 H 1.08010 * 119.83990 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7533 2.0376 1.2888 5 6 2.6290 1.4264 2.3520 6 1 3.2580 0.5815 2.1135 7 6 2.6272 1.9457 3.6292 8 7 1.8616 2.9749 3.9195 9 14 3.7133 1.1885 4.9469 10 1 5.0378 1.8601 4.9428 11 1 3.0740 1.3630 6.2758 12 1 3.8916 -0.2594 4.6696 13 6 1.4341 2.1504 -1.1087 14 1 0.3503 2.1976 -1.0040 15 6 1.8143 1.5104 -2.4608 16 6 3.0982 2.2830 -2.8410 17 6 2.9756 3.6223 -2.1458 18 6 3.6481 4.8111 -2.3677 19 6 3.3651 5.9272 -1.5932 20 7 4.0440 7.1268 -1.8182 21 6 2.4033 5.8476 -0.5938 22 6 1.7347 4.6604 -0.3770 23 6 2.0191 3.5462 -1.1501 24 1 -0.3633 0.4272 -0.9346 25 1 -0.3633 -1.0230 0.0974 26 1 -0.3633 0.5959 0.8373 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.9694 3.1029 1.2082 30 1 0.7058 1.8987 1.5568 31 1 1.8601 3.3400 4.8181 32 1 2.0212 0.4469 -2.3415 33 1 1.0302 1.6730 -3.2004 34 1 3.1504 2.4208 -3.9210 35 1 3.9797 1.7508 -2.4837 36 1 4.3956 4.8702 -3.1449 37 1 3.8446 7.9061 -1.2761 38 1 4.7150 7.1808 -2.5167 39 1 2.1789 6.7133 0.0116 40 1 0.9874 4.5987 0.4003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094090481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:46 Heat of formation + Delta-G solvation = 31.395916 kcal Electronic energy + Delta-G solvation = -19984.387126 eV Core-core repulsion = 17184.531067 eV Total energy + Delta-G solvation = -2799.856058 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.88467 -37.36302 -35.01050 -32.91690 -32.27158 -30.27370 -29.15594 -27.38047 -26.82030 -24.90489 -23.01453 -22.28813 -20.90578 -20.20828 -18.59602 -16.66617 -16.10212 -16.05195 -15.65460 -15.33044 -14.40948 -14.24586 -13.87587 -13.35971 -12.92268 -12.85706 -12.74320 -12.63294 -12.31753 -11.78625 -11.43869 -11.31538 -11.17130 -10.90504 -10.86321 -10.65511 -10.49284 -10.34193 -10.23862 -9.97627 -9.85499 -9.44345 -9.06448 -8.35538 -8.14257 -7.17860 -6.88686 -5.93632 -3.92500 1.96457 2.11726 3.36833 3.42521 3.45990 4.09620 4.32630 4.50945 4.95273 5.10907 5.19823 5.42708 5.48941 5.56122 5.62413 5.78673 5.86022 5.90665 5.94202 6.07531 6.11053 6.15409 6.26150 6.35675 6.43694 6.47287 6.53218 6.63506 6.70494 6.83558 6.94437 6.98587 7.33214 7.36750 7.47979 7.52701 7.83892 7.90955 7.99485 8.24571 8.37902 8.68749 9.13953 9.69843 11.17141 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.007589 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.232040 B = 3688.849508 C = 4835.438571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.056 3.944 3 N -0.522 5.522 4 C 0.182 3.818 5 C -0.499 4.499 6 H 0.060 0.940 7 C 0.055 3.945 8 N -0.899 5.899 9 Si 0.893 3.107 10 H -0.282 1.282 11 H -0.289 1.289 12 H -0.275 1.275 13 C 0.124 3.876 14 H 0.038 0.962 15 C -0.117 4.117 16 C -0.071 4.071 17 C -0.041 4.041 18 C -0.195 4.195 19 C 0.208 3.792 20 N -0.884 5.884 21 C -0.198 4.198 22 C -0.039 4.039 23 C -0.125 4.125 24 H 0.046 0.954 25 H 0.047 0.953 26 H 0.062 0.938 27 H 0.055 0.945 28 H 0.081 0.919 29 H 0.047 0.953 30 H -0.011 1.011 31 H 0.259 0.741 32 H 0.080 0.920 33 H 0.063 0.937 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.109 0.891 37 H 0.394 0.606 38 H 0.392 0.608 39 H 0.115 0.885 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.418 3.054 -13.260 13.613 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C -0.072 4.072 3 N -0.246 5.246 4 C 0.057 3.943 5 C -0.538 4.538 6 H 0.078 0.922 7 C -0.146 4.146 8 N -0.539 5.539 9 Si 0.722 3.278 10 H -0.208 1.208 11 H -0.215 1.215 12 H -0.200 1.200 13 C 0.016 3.984 14 H 0.056 0.944 15 C -0.154 4.154 16 C -0.108 4.108 17 C -0.042 4.042 18 C -0.218 4.218 19 C 0.106 3.894 20 N -0.424 5.424 21 C -0.221 4.221 22 C -0.058 4.058 23 C -0.127 4.127 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.081 0.919 27 H 0.074 0.926 28 H 0.099 0.901 29 H 0.065 0.935 30 H 0.007 0.993 31 H 0.068 0.932 32 H 0.099 0.901 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.100 0.900 36 H 0.128 0.872 37 H 0.222 0.778 38 H 0.220 0.780 39 H 0.134 0.866 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 0.850 3.096 -13.158 13.544 hybrid contribution -0.067 0.144 1.109 1.120 sum 0.784 3.241 -12.049 12.501 Atomic orbital electron populations 1.22404 0.99657 1.01124 1.01512 1.22068 0.91811 0.91856 1.01494 1.62410 1.56841 1.00920 1.04408 1.19936 0.94662 0.96086 0.83636 1.21164 1.23854 1.15114 0.93619 0.92193 1.24937 0.95914 0.95205 0.98525 1.69945 1.39565 1.24037 1.20376 0.86571 0.80653 0.79578 0.81024 1.20801 1.21454 1.19964 1.20916 0.95668 0.89694 0.92116 0.94450 1.22429 0.96745 1.00242 0.96032 1.20975 0.99165 0.92258 0.98387 1.20223 0.94388 0.93676 0.95939 1.19793 1.05563 0.92145 1.04251 1.17525 0.91807 0.86285 0.93828 1.42330 1.46398 1.10951 1.42769 1.20379 1.01313 0.98998 1.01388 1.20509 0.97999 0.91073 0.96256 1.20151 1.00187 0.94532 0.97837 0.93530 0.93417 0.91937 0.92634 0.90068 0.93481 0.99298 0.93157 0.90136 0.91797 0.91879 0.89988 0.87245 0.77809 0.78029 0.86648 0.86056 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.29 9.09 37.16 0.34 -2.95 16 2 C 0.06 1.08 5.60 -3.82 -0.02 1.06 16 3 N -0.52 -11.35 4.55 -228.21 -1.04 -12.39 16 4 C 0.18 4.73 4.47 -4.98 -0.02 4.71 16 5 C -0.50 -14.20 8.50 -34.45 -0.29 -14.49 16 6 H 0.06 1.70 7.24 -52.49 -0.38 1.32 16 7 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 8 N -0.90 -26.86 13.29 55.43 0.74 -26.12 16 9 Si 0.89 22.11 29.54 -169.99 -5.02 17.09 16 10 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.66 7.11 56.52 0.40 -6.25 16 13 C 0.12 2.35 1.96 -67.82 -0.13 2.21 16 14 H 0.04 0.72 6.49 -51.93 -0.34 0.38 16 15 C -0.12 -1.77 6.55 -25.19 -0.17 -1.94 16 16 C -0.07 -1.06 6.78 -26.71 -0.18 -1.24 16 17 C -0.04 -0.71 6.13 -104.22 -0.64 -1.35 16 18 C -0.19 -3.11 9.89 -39.33 -0.39 -3.50 16 19 C 0.21 3.27 6.75 -83.83 -0.57 2.70 16 20 N -0.88 -10.19 9.09 32.39 0.29 -9.90 16 21 C -0.20 -3.44 9.90 -39.43 -0.39 -3.83 16 22 C -0.04 -0.77 8.31 -39.56 -0.33 -1.10 16 23 C -0.12 -2.42 5.11 -104.14 -0.53 -2.95 16 24 H 0.05 0.74 6.67 -51.93 -0.35 0.40 16 25 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 26 H 0.06 1.25 6.34 -51.93 -0.33 0.92 16 27 H 0.06 0.93 6.23 -51.93 -0.32 0.61 16 28 H 0.08 1.72 6.82 -51.93 -0.35 1.37 16 29 H 0.05 1.31 4.74 -51.93 -0.25 1.06 16 30 H -0.01 -0.29 6.22 -51.92 -0.32 -0.62 16 31 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 32 H 0.08 1.17 5.86 -51.93 -0.30 0.87 16 33 H 0.06 0.85 8.14 -51.92 -0.42 0.43 16 34 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 36 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 37 H 0.39 3.86 8.84 -40.82 -0.36 3.50 16 38 H 0.39 3.65 8.84 -40.82 -0.36 3.29 16 39 H 0.12 1.79 8.06 -52.49 -0.42 1.37 16 40 H 0.12 2.50 7.44 -52.48 -0.39 2.11 16 LS Contribution 311.02 15.07 4.69 4.69 Total: -1.00 -31.23 311.02 -9.49 -40.72 By element: Atomic # 1 Polarization: 12.85 SS G_CDS: -5.73 Total: 7.12 kcal Atomic # 6 Polarization: -17.78 SS G_CDS: -3.42 Total: -21.20 kcal Atomic # 7 Polarization: -48.40 SS G_CDS: -0.01 Total: -48.41 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.02 Total: 17.09 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -31.23 -9.49 -40.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094090481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.115 kcal (2) G-P(sol) polarization free energy of solvation -31.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.886 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds