Wall clock time and date at job start Mon Mar 30 2020 06:55:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46896 * 109.47206 * 2 1 4 4 C 1.46902 * 111.00192 * 70.01179 * 3 2 1 5 5 C 1.50695 * 109.47386 * 69.50612 * 4 3 2 6 6 H 1.08000 * 119.99765 * 355.19610 * 5 4 3 7 7 C 1.37869 * 120.00149 * 175.19524 * 5 4 3 8 8 N 1.31512 * 120.00473 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 120.00062 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.47234 * 89.99915 * 9 7 5 11 11 H 1.48496 * 109.47290 * 209.99902 * 9 7 5 12 12 H 1.48501 * 109.47063 * 329.99827 * 9 7 5 13 13 C 1.46904 * 111.00005 * 306.05807 * 3 2 1 14 14 H 1.08993 * 110.27049 * 61.72686 * 13 3 2 15 15 C 1.54340 * 110.29865 * 299.65065 * 13 3 2 16 16 C 1.54596 * 102.28461 * 267.42451 * 15 13 3 17 17 C 1.51389 * 105.18563 * 333.61826 * 16 15 13 18 18 C 1.38373 * 130.31735 * 197.19797 * 17 16 15 19 19 C 1.38773 * 120.15561 * 180.02562 * 18 17 16 20 20 N 1.39670 * 120.11429 * 180.02562 * 19 18 17 21 21 C 1.38931 * 119.77509 * 359.97438 * 19 18 17 22 22 C 1.37956 * 119.85675 * 359.97438 * 21 19 18 23 23 C 1.38278 * 109.75297 * 17.21060 * 17 16 15 24 24 H 1.08999 * 109.47079 * 65.43544 * 1 2 3 25 25 H 1.08994 * 109.46992 * 185.43953 * 1 2 3 26 26 H 1.09000 * 109.46967 * 305.43864 * 1 2 3 27 27 H 1.08998 * 109.47009 * 239.99587 * 2 1 3 28 28 H 1.08996 * 109.47155 * 119.99832 * 2 1 3 29 29 H 1.09002 * 109.47110 * 189.50685 * 4 3 2 30 30 H 1.09007 * 109.47211 * 309.50671 * 4 3 2 31 31 H 0.96993 * 120.00676 * 179.97438 * 8 7 5 32 32 H 1.08997 * 110.82208 * 25.68861 * 15 13 3 33 33 H 1.09007 * 110.81807 * 149.22686 * 15 13 3 34 34 H 1.08998 * 110.28374 * 214.69181 * 16 15 13 35 35 H 1.09001 * 110.30351 * 92.54534 * 16 15 13 36 36 H 1.07997 * 119.92435 * 359.97438 * 18 17 16 37 37 H 0.97000 * 120.00194 * 179.97438 * 20 19 18 38 38 H 0.96998 * 120.00123 * 359.97438 * 20 19 18 39 39 H 1.07997 * 120.07331 * 180.02562 * 21 19 18 40 40 H 1.08010 * 119.83990 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7533 2.0376 1.2888 5 6 2.6290 1.4264 2.3520 6 1 3.2580 0.5815 2.1135 7 6 2.6272 1.9457 3.6292 8 7 1.8616 2.9749 3.9195 9 14 3.7133 1.1885 4.9469 10 1 5.0378 1.8601 4.9428 11 1 3.0740 1.3630 6.2758 12 1 3.8916 -0.2594 4.6696 13 6 1.4341 2.1504 -1.1087 14 1 0.3503 2.1976 -1.0040 15 6 1.8143 1.5104 -2.4608 16 6 3.0982 2.2830 -2.8410 17 6 2.9756 3.6223 -2.1458 18 6 3.6481 4.8111 -2.3677 19 6 3.3651 5.9272 -1.5932 20 7 4.0440 7.1268 -1.8182 21 6 2.4033 5.8476 -0.5938 22 6 1.7347 4.6604 -0.3770 23 6 2.0191 3.5462 -1.1501 24 1 -0.3633 0.4272 -0.9346 25 1 -0.3633 -1.0230 0.0974 26 1 -0.3633 0.5959 0.8373 27 1 1.8934 -0.5139 -0.8899 28 1 1.8934 -0.5138 0.8900 29 1 1.9694 3.1029 1.2082 30 1 0.7058 1.8987 1.5568 31 1 1.8601 3.3400 4.8181 32 1 2.0212 0.4469 -2.3415 33 1 1.0302 1.6730 -3.2004 34 1 3.1504 2.4208 -3.9210 35 1 3.9797 1.7508 -2.4837 36 1 4.3956 4.8702 -3.1449 37 1 3.8446 7.9061 -1.2761 38 1 4.7150 7.1808 -2.5167 39 1 2.1789 6.7133 0.0116 40 1 0.9874 4.5987 0.4003 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094090481.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:46 Heat of formation + Delta-G solvation = 10.697141 kcal Electronic energy + Delta-G solvation = -19985.284692 eV Core-core repulsion = 17184.531067 eV Total energy + Delta-G solvation = -2800.753625 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -41.24646 -38.81036 -36.42264 -34.71502 -33.84999 -31.62119 -30.81297 -28.80922 -28.43926 -26.47927 -24.80311 -23.67220 -22.49465 -21.47076 -20.10652 -18.33930 -17.70125 -17.34407 -17.19314 -16.84173 -16.28798 -15.56393 -15.31540 -14.85773 -14.59322 -14.29156 -14.22583 -13.92046 -13.85101 -13.43241 -13.09706 -12.83411 -12.79054 -12.55456 -12.53015 -12.20347 -12.05515 -11.98993 -11.66280 -11.58806 -11.31252 -11.11738 -10.91462 -10.53666 -9.50077 -8.82396 -8.22759 -8.12680 -6.22002 0.61675 0.76719 1.38747 1.40553 1.51025 2.41841 2.94391 3.07211 3.17733 3.55879 3.76720 3.81491 4.23230 4.25845 4.30961 4.36360 4.46098 4.56558 4.59447 4.70374 4.77699 4.90775 4.95265 4.99151 5.07302 5.11091 5.21616 5.27077 5.34150 5.37289 5.48747 5.51794 5.55134 5.67227 5.73644 6.00884 6.07087 6.17476 6.54299 6.68900 6.79850 6.94452 7.10838 7.45429 8.95942 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.016031 B = 0.007589 C = 0.005789 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1746.232040 B = 3688.849508 C = 4835.438571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.054 3.946 3 N -0.529 5.529 4 C 0.199 3.801 5 C -0.515 4.515 6 H 0.057 0.943 7 C 0.001 3.999 8 N -0.933 5.933 9 Si 0.962 3.038 10 H -0.277 1.277 11 H -0.283 1.283 12 H -0.264 1.264 13 C 0.120 3.880 14 H 0.024 0.976 15 C -0.107 4.107 16 C -0.066 4.066 17 C -0.045 4.045 18 C -0.198 4.198 19 C 0.216 3.784 20 N -0.866 5.866 21 C -0.216 4.216 22 C -0.065 4.065 23 C -0.161 4.161 24 H 0.063 0.937 25 H 0.072 0.928 26 H 0.024 0.976 27 H 0.091 0.909 28 H 0.055 0.945 29 H 0.025 0.975 30 H -0.042 1.042 31 H 0.261 0.739 32 H 0.090 0.910 33 H 0.088 0.912 34 H 0.098 0.902 35 H 0.078 0.922 36 H 0.142 0.858 37 H 0.404 0.596 38 H 0.408 0.592 39 H 0.124 0.876 40 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.177 2.473 -15.416 15.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C -0.074 4.074 3 N -0.252 5.252 4 C 0.073 3.927 5 C -0.554 4.554 6 H 0.075 0.925 7 C -0.197 4.197 8 N -0.574 5.574 9 Si 0.787 3.213 10 H -0.203 1.203 11 H -0.208 1.208 12 H -0.188 1.188 13 C 0.012 3.988 14 H 0.041 0.959 15 C -0.144 4.144 16 C -0.103 4.103 17 C -0.046 4.046 18 C -0.221 4.221 19 C 0.110 3.890 20 N -0.407 5.407 21 C -0.239 4.239 22 C -0.084 4.084 23 C -0.163 4.163 24 H 0.082 0.918 25 H 0.091 0.909 26 H 0.044 0.956 27 H 0.109 0.891 28 H 0.074 0.926 29 H 0.043 0.957 30 H -0.024 1.024 31 H 0.069 0.931 32 H 0.108 0.892 33 H 0.106 0.894 34 H 0.117 0.883 35 H 0.097 0.903 36 H 0.160 0.840 37 H 0.234 0.766 38 H 0.238 0.762 39 H 0.142 0.858 40 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.626 2.532 -15.344 15.772 hybrid contribution -0.624 0.416 1.733 1.888 sum 2.003 2.948 -13.611 14.070 Atomic orbital electron populations 1.22285 0.98446 1.02088 1.00810 1.22129 0.92874 0.90489 1.01907 1.62331 1.57676 1.02049 1.03187 1.19536 0.92325 0.95127 0.85760 1.21493 1.24036 1.15116 0.94716 0.92485 1.25831 0.97299 0.95636 1.00913 1.70087 1.41028 1.25344 1.20943 0.85490 0.78631 0.79111 0.78026 1.20270 1.20814 1.18847 1.21074 0.94765 0.89984 0.92980 0.95869 1.22444 0.97729 1.00397 0.93846 1.21019 0.98579 0.90494 1.00229 1.20611 0.93446 0.95309 0.95233 1.20161 1.05725 0.91510 1.04707 1.17597 0.90959 0.87710 0.92696 1.42272 1.45693 1.09853 1.42905 1.20506 1.02145 0.98567 1.02634 1.20462 0.98596 0.92888 0.96474 1.20339 1.02093 0.94548 0.99332 0.91820 0.90869 0.95640 0.89111 0.92603 0.95739 1.02414 0.93052 0.89172 0.89371 0.88339 0.90342 0.84047 0.76643 0.76234 0.85804 0.89287 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -6.22 9.09 71.98 0.65 -5.57 16 2 C 0.05 2.06 5.60 86.31 0.48 2.55 16 3 N -0.53 -23.54 4.55 -875.93 -3.99 -27.53 16 4 C 0.20 10.98 4.47 85.56 0.38 11.36 16 5 C -0.52 -30.38 8.50 25.60 0.22 -30.16 16 6 H 0.06 3.31 7.24 -2.91 -0.02 3.29 16 7 C 0.00 0.04 5.46 84.65 0.46 0.50 16 8 N -0.93 -57.96 13.29 21.44 0.28 -57.68 16 9 Si 0.96 46.07 29.54 68.60 2.03 48.10 16 10 H -0.28 -12.98 7.11 99.48 0.71 -12.27 16 11 H -0.28 -13.16 7.11 99.48 0.71 -12.46 16 12 H -0.26 -12.10 7.11 99.48 0.71 -11.39 16 13 C 0.12 4.57 1.96 44.84 0.09 4.66 16 14 H 0.02 0.94 6.49 -2.39 -0.02 0.92 16 15 C -0.11 -2.97 6.55 31.59 0.21 -2.76 16 16 C -0.07 -1.78 6.78 30.61 0.21 -1.57 16 17 C -0.04 -1.49 6.13 -19.60 -0.12 -1.61 16 18 C -0.20 -5.85 9.89 22.43 0.22 -5.63 16 19 C 0.22 6.45 6.75 38.19 0.26 6.70 16 20 N -0.87 -17.71 9.09 -51.44 -0.47 -18.18 16 21 C -0.22 -7.69 9.90 22.37 0.22 -7.47 16 22 C -0.06 -2.72 8.31 22.28 0.19 -2.53 16 23 C -0.16 -6.38 5.11 -19.55 -0.10 -6.48 16 24 H 0.06 1.99 6.67 -2.39 -0.02 1.97 16 25 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 26 H 0.02 1.06 6.34 -2.39 -0.02 1.04 16 27 H 0.09 2.84 6.23 -2.39 -0.01 2.82 16 28 H 0.06 2.40 6.82 -2.39 -0.02 2.39 16 29 H 0.02 1.47 4.74 -2.39 -0.01 1.45 16 30 H -0.04 -2.50 6.22 -2.38 -0.01 -2.51 16 31 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 32 H 0.09 2.32 5.86 -2.39 -0.01 2.31 16 33 H 0.09 2.04 8.14 -2.38 -0.02 2.02 16 34 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 35 H 0.08 2.19 8.14 -2.39 -0.02 2.17 16 36 H 0.14 3.21 8.06 -2.91 -0.02 3.19 16 37 H 0.40 6.99 8.84 -92.71 -0.82 6.17 16 38 H 0.41 6.15 8.84 -92.71 -0.82 5.33 16 39 H 0.12 3.99 8.06 -2.91 -0.02 3.97 16 40 H 0.09 4.14 7.44 -2.91 -0.02 4.12 16 Total: -1.00 -70.81 311.02 0.65 -70.16 By element: Atomic # 1 Polarization: 23.72 SS G_CDS: -0.57 Total: 23.14 kcal Atomic # 6 Polarization: -41.39 SS G_CDS: 3.37 Total: -38.02 kcal Atomic # 7 Polarization: -99.22 SS G_CDS: -4.17 Total: -103.38 kcal Atomic # 14 Polarization: 46.07 SS G_CDS: 2.03 Total: 48.10 kcal Total: -70.81 0.65 -70.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094090481.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.860 kcal (2) G-P(sol) polarization free energy of solvation -70.814 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.046 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.651 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.697 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds