Wall clock time and date at job start Mon Mar 30 2020 06:55:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.47402 * 2 1 4 4 C 1.46908 * 110.99764 * 297.49868 * 3 2 1 5 5 C 1.50695 * 109.47056 * 74.75538 * 4 3 2 6 6 H 1.07999 * 120.00297 * 5.37408 * 5 4 3 7 7 C 1.37881 * 119.99676 * 185.36664 * 5 4 3 8 8 N 1.31512 * 120.00083 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00014 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47484 * 89.99601 * 9 7 5 11 11 H 1.48506 * 109.47162 * 209.99583 * 9 7 5 12 12 H 1.48505 * 109.47171 * 329.99374 * 9 7 5 13 13 C 1.46894 * 111.00084 * 173.54318 * 3 2 1 14 14 H 1.09004 * 110.34510 * 181.11667 * 13 3 2 15 15 C 1.54332 * 110.30154 * 303.23669 * 13 3 2 16 16 C 1.54502 * 102.32709 * 92.36331 * 15 13 3 17 17 C 1.51377 * 105.08803 * 26.68428 * 16 15 13 18 18 C 1.38378 * 130.32058 * 162.72987 * 17 16 15 19 19 C 1.38772 * 120.15787 * 179.66252 * 18 17 16 20 20 N 1.39672 * 120.11131 * 180.02562 * 19 18 17 21 21 C 1.38933 * 119.77645 * 0.02562 * 19 18 17 22 22 C 1.37959 * 119.85889 * 0.02562 * 21 19 18 23 23 C 1.38282 * 109.75675 * 342.45203 * 17 16 15 24 24 H 1.08999 * 109.46662 * 308.98293 * 1 2 3 25 25 H 1.08999 * 109.47127 * 68.98457 * 1 2 3 26 26 H 1.08998 * 109.47060 * 188.98506 * 1 2 3 27 27 H 1.09005 * 109.47139 * 239.99710 * 2 1 3 28 28 H 1.09002 * 109.47255 * 119.99915 * 2 1 3 29 29 H 1.09001 * 109.46866 * 194.76229 * 4 3 2 30 30 H 1.09006 * 109.46744 * 314.75692 * 4 3 2 31 31 H 0.96996 * 120.00306 * 179.97438 * 8 7 5 32 32 H 1.09008 * 110.82127 * 210.78169 * 15 13 3 33 33 H 1.09004 * 110.82189 * 334.12576 * 15 13 3 34 34 H 1.09000 * 110.40642 * 267.75151 * 16 15 13 35 35 H 1.08994 * 110.27206 * 145.54740 * 16 15 13 36 36 H 1.07997 * 119.91992 * 359.68284 * 18 17 16 37 37 H 0.97004 * 120.00447 * 359.97438 * 20 19 18 38 38 H 0.97003 * 119.99950 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.06977 * 179.97438 * 21 19 18 40 40 H 1.07993 * 119.84003 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.5982 2.0924 -1.2166 5 6 0.1332 2.4314 -1.1184 6 1 -0.4082 2.2279 -0.2063 7 6 -0.5160 3.0016 -2.1929 8 7 -1.7946 3.2970 -2.1074 9 14 0.4204 3.3531 -3.7705 10 1 0.3411 2.1718 -4.6669 11 1 -0.1779 4.5306 -4.4494 12 1 1.8424 3.6363 -3.4495 13 6 3.4800 1.4270 0.1542 14 1 3.8296 2.4593 0.1726 15 6 3.9034 0.6953 1.4454 16 6 4.1720 -0.7393 0.9385 17 6 4.5499 -0.5782 -0.5184 18 6 5.1883 -1.4529 -1.3799 19 6 5.4267 -1.0850 -2.6966 20 7 6.0707 -1.9689 -3.5654 21 6 5.0227 0.1654 -3.1476 22 6 4.3875 1.0345 -2.2848 23 6 4.1492 0.6658 -0.9704 24 1 -0.3632 0.6465 0.7988 25 1 -0.3633 0.3685 -0.9593 26 1 -0.3633 -1.0150 0.1605 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.1773 3.0098 -1.3225 30 1 1.7662 1.4545 -2.0844 31 1 -2.2512 3.6984 -2.8632 32 1 4.8076 1.1381 1.8630 33 1 3.0961 0.7034 2.1778 34 1 3.2736 -1.3496 1.0311 35 1 4.9944 -1.1886 1.4951 36 1 5.5014 -2.4243 -1.0268 37 1 6.3525 -2.8414 -3.2488 38 1 6.2362 -1.7102 -4.4856 39 1 5.2062 0.4568 -4.1713 40 1 4.0740 2.0066 -2.6355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000094090482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:50 Heat of formation + Delta-G solvation = 40.388563 kcal Electronic energy + Delta-G solvation = -20245.483246 eV Core-core repulsion = 17446.017138 eV Total energy + Delta-G solvation = -2799.466108 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.35098 -37.50241 -34.91645 -33.07019 -32.16561 -30.75324 -29.31275 -27.63993 -27.44417 -25.20094 -22.46393 -22.00069 -20.90988 -20.38194 -19.18581 -16.93752 -16.64308 -16.41986 -15.70691 -15.15069 -14.56711 -14.30325 -13.83314 -13.45396 -13.30147 -13.12745 -12.78156 -12.71448 -12.35760 -11.71129 -11.62439 -11.31572 -11.23084 -11.03565 -10.97829 -10.63753 -10.59120 -10.43294 -10.24951 -9.97667 -9.90000 -9.45559 -8.95661 -8.48726 -8.41572 -7.42985 -7.15761 -5.97200 -3.89558 1.66475 1.84175 3.32068 3.39735 3.41676 3.86442 4.07671 4.48459 4.73339 4.81495 5.06778 5.22613 5.33675 5.37662 5.44562 5.56084 5.63465 5.84826 5.90463 5.98739 6.12983 6.17371 6.20949 6.29800 6.39039 6.40444 6.50856 6.59338 6.70513 6.73931 6.92734 6.97424 7.07426 7.10247 7.19836 7.58268 7.60654 7.74068 7.76311 8.02416 8.19445 8.76156 9.14460 9.64889 11.15157 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019312 B = 0.007765 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.512306 B = 3604.893340 C = 4478.845557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.060 3.940 3 N -0.509 5.509 4 C 0.162 3.838 5 C -0.500 4.500 6 H 0.091 0.909 7 C 0.065 3.935 8 N -0.902 5.902 9 Si 0.868 3.132 10 H -0.279 1.279 11 H -0.288 1.288 12 H -0.268 1.268 13 C 0.122 3.878 14 H 0.082 0.918 15 C -0.112 4.112 16 C -0.089 4.089 17 C -0.044 4.044 18 C -0.191 4.191 19 C 0.210 3.790 20 N -0.883 5.883 21 C -0.201 4.201 22 C -0.049 4.049 23 C -0.169 4.169 24 H 0.058 0.942 25 H 0.090 0.910 26 H 0.025 0.975 27 H 0.020 0.980 28 H 0.060 0.940 29 H 0.021 0.979 30 H -0.010 1.010 31 H 0.262 0.738 32 H 0.070 0.930 33 H 0.086 0.914 34 H 0.086 0.914 35 H 0.068 0.932 36 H 0.112 0.888 37 H 0.394 0.606 38 H 0.395 0.605 39 H 0.116 0.884 40 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.446 -9.800 1.302 18.339 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.068 4.068 3 N -0.231 5.231 4 C 0.036 3.964 5 C -0.538 4.538 6 H 0.109 0.891 7 C -0.135 4.135 8 N -0.542 5.542 9 Si 0.696 3.304 10 H -0.205 1.205 11 H -0.214 1.214 12 H -0.193 1.193 13 C 0.013 3.987 14 H 0.100 0.900 15 C -0.150 4.150 16 C -0.126 4.126 17 C -0.045 4.045 18 C -0.214 4.214 19 C 0.107 3.893 20 N -0.423 5.423 21 C -0.223 4.223 22 C -0.068 4.068 23 C -0.173 4.173 24 H 0.077 0.923 25 H 0.109 0.891 26 H 0.043 0.957 27 H 0.038 0.962 28 H 0.078 0.922 29 H 0.039 0.961 30 H 0.008 0.992 31 H 0.071 0.929 32 H 0.089 0.911 33 H 0.104 0.896 34 H 0.104 0.896 35 H 0.086 0.914 36 H 0.130 0.870 37 H 0.222 0.778 38 H 0.223 0.777 39 H 0.134 0.866 40 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 15.027 -9.423 1.651 17.814 hybrid contribution 0.973 -0.445 -2.184 2.432 sum 16.001 -9.868 -0.533 18.806 Atomic orbital electron populations 1.22139 0.94484 0.98232 1.05508 1.22111 0.96639 0.89425 0.98629 1.62470 1.06034 1.14091 1.40543 1.20189 0.97411 0.92667 0.86136 1.21290 0.92334 1.38641 1.01546 0.89065 1.24879 0.94719 0.95733 0.98205 1.69881 1.08987 1.43942 1.31398 0.86966 0.80779 0.78029 0.84651 1.20517 1.21388 1.19299 1.21233 0.88810 0.98187 0.90503 0.90029 1.22349 1.01354 0.93919 0.97401 1.21345 1.01288 0.98507 0.91412 1.20301 0.94973 0.93765 0.95459 1.19869 1.08688 1.00561 0.92277 1.17535 0.92171 0.89837 0.89764 1.42359 1.68324 1.18576 1.13028 1.20426 1.07730 0.94144 1.00043 1.20490 0.95080 0.98922 0.92294 1.21227 1.02686 0.97470 0.95876 0.92276 0.89089 0.95652 0.96188 0.92220 0.96107 0.99180 0.92853 0.91119 0.89583 0.89551 0.91364 0.87004 0.77835 0.77709 0.86607 0.86497 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.10 8.40 37.16 0.31 -2.78 16 2 C 0.06 1.17 4.19 -3.82 -0.02 1.16 16 3 N -0.51 -10.67 4.56 -228.21 -1.04 -11.71 16 4 C 0.16 3.94 2.79 -4.97 -0.01 3.93 16 5 C -0.50 -13.93 6.97 -34.44 -0.24 -14.17 16 6 H 0.09 2.73 5.96 -52.49 -0.31 2.42 16 7 C 0.07 1.88 5.47 -17.82 -0.10 1.78 16 8 N -0.90 -27.53 13.96 55.43 0.77 -26.76 16 9 Si 0.87 21.76 27.36 -169.99 -4.65 17.11 16 10 H -0.28 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.29 -7.19 7.11 56.52 0.40 -6.78 16 12 H -0.27 -6.45 6.70 56.52 0.38 -6.07 16 13 C 0.12 2.15 3.11 -67.83 -0.21 1.94 16 14 H 0.08 1.46 8.04 -51.93 -0.42 1.04 16 15 C -0.11 -1.59 6.13 -25.25 -0.15 -1.74 16 16 C -0.09 -1.18 5.96 -26.76 -0.16 -1.34 16 17 C -0.04 -0.67 5.47 -104.22 -0.57 -1.24 16 18 C -0.19 -2.70 9.89 -39.33 -0.39 -3.09 16 19 C 0.21 2.90 6.75 -83.83 -0.57 2.34 16 20 N -0.88 -8.74 9.09 32.39 0.29 -8.45 16 21 C -0.20 -3.07 9.90 -39.43 -0.39 -3.46 16 22 C -0.05 -0.85 8.84 -39.56 -0.35 -1.20 16 23 C -0.17 -2.93 4.19 -104.14 -0.44 -3.36 16 24 H 0.06 1.31 7.14 -51.93 -0.37 0.93 16 25 H 0.09 2.25 5.83 -51.93 -0.30 1.95 16 26 H 0.02 0.46 8.14 -51.93 -0.42 0.03 16 27 H 0.02 0.42 6.92 -51.93 -0.36 0.06 16 28 H 0.06 1.02 4.52 -51.93 -0.23 0.78 16 29 H 0.02 0.52 7.31 -51.93 -0.38 0.14 16 30 H -0.01 -0.24 6.20 -51.93 -0.32 -0.56 16 31 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 32 H 0.07 0.87 8.14 -51.92 -0.42 0.45 16 33 H 0.09 1.22 7.70 -51.93 -0.40 0.82 16 34 H 0.09 1.16 5.91 -51.93 -0.31 0.85 16 35 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 36 H 0.11 1.33 8.06 -52.49 -0.42 0.90 16 37 H 0.39 3.08 8.84 -40.82 -0.36 2.72 16 38 H 0.40 3.24 8.84 -40.82 -0.36 2.88 16 39 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 40 H 0.12 2.11 7.95 -52.49 -0.42 1.69 16 LS Contribution 303.96 15.07 4.58 4.58 Total: -1.00 -30.98 303.96 -9.14 -40.12 By element: Atomic # 1 Polarization: 12.17 SS G_CDS: -5.82 Total: 6.35 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: -3.28 Total: -21.24 kcal Atomic # 7 Polarization: -46.95 SS G_CDS: 0.03 Total: -46.92 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.65 Total: 17.11 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -30.98 -9.14 -40.12 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094090482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.509 kcal (2) G-P(sol) polarization free energy of solvation -30.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.143 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.389 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds