Wall clock time and date at job start Mon Mar 30 2020 06:55:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.47402 * 2 1 4 4 C 1.46908 * 110.99764 * 297.49868 * 3 2 1 5 5 C 1.50695 * 109.47056 * 74.75538 * 4 3 2 6 6 H 1.07999 * 120.00297 * 5.37408 * 5 4 3 7 7 C 1.37881 * 119.99676 * 185.36664 * 5 4 3 8 8 N 1.31512 * 120.00083 * 179.97438 * 7 5 4 9 9 Si 1.86795 * 120.00014 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47484 * 89.99601 * 9 7 5 11 11 H 1.48506 * 109.47162 * 209.99583 * 9 7 5 12 12 H 1.48505 * 109.47171 * 329.99374 * 9 7 5 13 13 C 1.46894 * 111.00084 * 173.54318 * 3 2 1 14 14 H 1.09004 * 110.34510 * 181.11667 * 13 3 2 15 15 C 1.54332 * 110.30154 * 303.23669 * 13 3 2 16 16 C 1.54502 * 102.32709 * 92.36331 * 15 13 3 17 17 C 1.51377 * 105.08803 * 26.68428 * 16 15 13 18 18 C 1.38378 * 130.32058 * 162.72987 * 17 16 15 19 19 C 1.38772 * 120.15787 * 179.66252 * 18 17 16 20 20 N 1.39672 * 120.11131 * 180.02562 * 19 18 17 21 21 C 1.38933 * 119.77645 * 0.02562 * 19 18 17 22 22 C 1.37959 * 119.85889 * 0.02562 * 21 19 18 23 23 C 1.38282 * 109.75675 * 342.45203 * 17 16 15 24 24 H 1.08999 * 109.46662 * 308.98293 * 1 2 3 25 25 H 1.08999 * 109.47127 * 68.98457 * 1 2 3 26 26 H 1.08998 * 109.47060 * 188.98506 * 1 2 3 27 27 H 1.09005 * 109.47139 * 239.99710 * 2 1 3 28 28 H 1.09002 * 109.47255 * 119.99915 * 2 1 3 29 29 H 1.09001 * 109.46866 * 194.76229 * 4 3 2 30 30 H 1.09006 * 109.46744 * 314.75692 * 4 3 2 31 31 H 0.96996 * 120.00306 * 179.97438 * 8 7 5 32 32 H 1.09008 * 110.82127 * 210.78169 * 15 13 3 33 33 H 1.09004 * 110.82189 * 334.12576 * 15 13 3 34 34 H 1.09000 * 110.40642 * 267.75151 * 16 15 13 35 35 H 1.08994 * 110.27206 * 145.54740 * 16 15 13 36 36 H 1.07997 * 119.91992 * 359.68284 * 18 17 16 37 37 H 0.97004 * 120.00447 * 359.97438 * 20 19 18 38 38 H 0.97003 * 119.99950 * 179.97438 * 20 19 18 39 39 H 1.08002 * 120.06977 * 179.97438 * 21 19 18 40 40 H 1.07993 * 119.84003 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 1.5982 2.0924 -1.2166 5 6 0.1332 2.4314 -1.1184 6 1 -0.4082 2.2279 -0.2063 7 6 -0.5160 3.0016 -2.1929 8 7 -1.7946 3.2970 -2.1074 9 14 0.4204 3.3531 -3.7705 10 1 0.3411 2.1718 -4.6669 11 1 -0.1779 4.5306 -4.4494 12 1 1.8424 3.6363 -3.4495 13 6 3.4800 1.4270 0.1542 14 1 3.8296 2.4593 0.1726 15 6 3.9034 0.6953 1.4454 16 6 4.1720 -0.7393 0.9385 17 6 4.5499 -0.5782 -0.5184 18 6 5.1883 -1.4529 -1.3799 19 6 5.4267 -1.0850 -2.6966 20 7 6.0707 -1.9689 -3.5654 21 6 5.0227 0.1654 -3.1476 22 6 4.3875 1.0345 -2.2848 23 6 4.1492 0.6658 -0.9704 24 1 -0.3632 0.6465 0.7988 25 1 -0.3633 0.3685 -0.9593 26 1 -0.3633 -1.0150 0.1605 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 2.1773 3.0098 -1.3225 30 1 1.7662 1.4545 -2.0844 31 1 -2.2512 3.6984 -2.8632 32 1 4.8076 1.1381 1.8630 33 1 3.0961 0.7034 2.1778 34 1 3.2736 -1.3496 1.0311 35 1 4.9944 -1.1886 1.4951 36 1 5.5014 -2.4243 -1.0268 37 1 6.3525 -2.8414 -3.2488 38 1 6.2362 -1.7102 -4.4856 39 1 5.2062 0.4568 -4.1713 40 1 4.0740 2.0066 -2.6355 RHF calculation, no. of doubly occupied orbitals= 49 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000094090482.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:55:49 Heat of formation + Delta-G solvation = 19.169388 kcal Electronic energy + Delta-G solvation = -20246.403378 eV Core-core repulsion = 17446.017138 eV Total energy + Delta-G solvation = -2800.386240 eV No. of doubly occupied orbitals = 49 Molecular weight (most abundant/longest-lived isotopes) = 260.158 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.58627 -38.78846 -36.35941 -34.48601 -33.91877 -32.13188 -30.86061 -29.30802 -28.67712 -26.58321 -23.98463 -23.55031 -22.35251 -21.55264 -20.70531 -18.80300 -17.79588 -17.62029 -17.01318 -16.45576 -16.34772 -15.60104 -15.41423 -15.09377 -14.82479 -14.48305 -14.21415 -13.95564 -13.82856 -13.27828 -13.05685 -12.89358 -12.82090 -12.71466 -12.43332 -12.29325 -11.92668 -11.90945 -11.80701 -11.63944 -11.36479 -11.07787 -10.90658 -10.64666 -9.59773 -8.99990 -8.30258 -8.21204 -6.17027 0.51514 0.67539 1.30057 1.31681 1.41806 2.35683 2.89970 2.99054 3.10699 3.34109 3.61257 3.84736 4.14960 4.19632 4.32797 4.39339 4.43901 4.49463 4.60403 4.73738 4.77953 4.88143 4.90044 4.94531 5.02374 5.08985 5.13292 5.17247 5.28530 5.31467 5.39351 5.47219 5.56709 5.64738 5.79337 5.88318 5.98651 6.11747 6.51544 6.61866 6.75017 6.86692 7.03669 7.40755 8.94001 Molecular weight = 260.16amu Principal moments of inertia in cm(-1) A = 0.019312 B = 0.007765 C = 0.006250 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1449.512306 B = 3604.893340 C = 4478.845557 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.069 3.931 3 N -0.522 5.522 4 C 0.180 3.820 5 C -0.494 4.494 6 H 0.060 0.940 7 C 0.009 3.991 8 N -0.947 5.947 9 Si 0.928 3.072 10 H -0.275 1.275 11 H -0.283 1.283 12 H -0.256 1.256 13 C 0.114 3.886 14 H 0.069 0.931 15 C -0.105 4.105 16 C -0.083 4.083 17 C -0.044 4.044 18 C -0.196 4.196 19 C 0.217 3.783 20 N -0.866 5.866 21 C -0.216 4.216 22 C -0.072 4.072 23 C -0.198 4.198 24 H 0.041 0.959 25 H 0.048 0.952 26 H 0.055 0.945 27 H 0.011 0.989 28 H 0.094 0.906 29 H 0.013 0.987 30 H -0.018 1.018 31 H 0.263 0.737 32 H 0.092 0.908 33 H 0.086 0.914 34 H 0.089 0.911 35 H 0.099 0.901 36 H 0.140 0.860 37 H 0.408 0.592 38 H 0.405 0.595 39 H 0.129 0.871 40 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.117 -12.077 1.418 21.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.059 4.059 3 N -0.245 5.245 4 C 0.052 3.948 5 C -0.533 4.533 6 H 0.078 0.922 7 C -0.187 4.187 8 N -0.589 5.589 9 Si 0.753 3.247 10 H -0.201 1.201 11 H -0.208 1.208 12 H -0.180 1.180 13 C 0.006 3.994 14 H 0.087 0.913 15 C -0.142 4.142 16 C -0.120 4.120 17 C -0.045 4.045 18 C -0.219 4.219 19 C 0.111 3.889 20 N -0.407 5.407 21 C -0.238 4.238 22 C -0.092 4.092 23 C -0.202 4.202 24 H 0.060 0.940 25 H 0.067 0.933 26 H 0.074 0.926 27 H 0.029 0.971 28 H 0.112 0.888 29 H 0.031 0.969 30 H 0.000 1.000 31 H 0.072 0.928 32 H 0.110 0.890 33 H 0.104 0.896 34 H 0.107 0.893 35 H 0.118 0.882 36 H 0.158 0.842 37 H 0.238 0.762 38 H 0.235 0.765 39 H 0.147 0.853 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 17.742 -11.731 1.759 21.343 hybrid contribution 0.182 0.192 -2.187 2.203 sum 17.924 -11.539 -0.428 21.322 Atomic orbital electron populations 1.21971 0.95976 0.99345 1.02299 1.22089 0.95152 0.88891 0.99738 1.62378 1.08933 1.14733 1.38413 1.19831 0.94806 0.92560 0.87574 1.21495 0.94062 1.37462 1.00254 0.92166 1.25635 0.95489 0.95963 1.01651 1.70018 1.10673 1.45623 1.32563 0.85991 0.80073 0.77978 0.80631 1.20075 1.20850 1.17964 1.21343 0.86501 0.98476 0.93085 0.91316 1.22349 1.02192 0.94301 0.95390 1.21352 1.02483 0.97800 0.90356 1.20571 0.94394 0.92939 0.96620 1.20194 1.08071 1.01482 0.92123 1.17640 0.91291 0.89633 0.90343 1.42329 1.66785 1.18490 1.13086 1.20582 1.08012 0.94759 1.00466 1.20526 0.96598 0.98817 0.93210 1.21178 1.04581 0.98739 0.95691 0.94000 0.93348 0.92633 0.97072 0.88803 0.96920 1.00046 0.92804 0.88961 0.89578 0.89346 0.88219 0.84190 0.76229 0.76544 0.85348 0.88563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.92 8.40 71.98 0.60 -5.32 16 2 C 0.07 2.64 4.19 86.30 0.36 3.01 16 3 N -0.52 -22.01 4.56 -875.92 -4.00 -26.00 16 4 C 0.18 8.94 2.79 85.55 0.24 9.18 16 5 C -0.49 -28.62 6.97 25.60 0.18 -28.44 16 6 H 0.06 3.79 5.96 -2.91 -0.02 3.78 16 7 C 0.01 0.54 5.47 84.66 0.46 1.00 16 8 N -0.95 -59.85 13.96 21.45 0.30 -59.55 16 9 Si 0.93 45.98 27.36 68.60 1.88 47.85 16 10 H -0.28 -13.36 7.11 99.48 0.71 -12.65 16 11 H -0.28 -13.69 7.11 99.48 0.71 -12.98 16 12 H -0.26 -12.02 6.70 99.48 0.67 -11.35 16 13 C 0.11 3.98 3.11 44.84 0.14 4.12 16 14 H 0.07 2.49 8.04 -2.38 -0.02 2.47 16 15 C -0.10 -2.68 6.13 31.56 0.19 -2.49 16 16 C -0.08 -1.90 5.96 30.57 0.18 -1.72 16 17 C -0.04 -1.23 5.47 -19.61 -0.11 -1.33 16 18 C -0.20 -4.83 9.89 22.43 0.22 -4.61 16 19 C 0.22 5.35 6.75 38.19 0.26 5.61 16 20 N -0.87 -13.99 9.09 -51.44 -0.47 -14.46 16 21 C -0.22 -6.30 9.90 22.37 0.22 -6.08 16 22 C -0.07 -2.51 8.84 22.28 0.20 -2.31 16 23 C -0.20 -6.69 4.19 -19.55 -0.08 -6.77 16 24 H 0.04 1.89 7.14 -2.39 -0.02 1.88 16 25 H 0.05 2.47 5.83 -2.39 -0.01 2.45 16 26 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 27 H 0.01 0.45 6.92 -2.38 -0.02 0.43 16 28 H 0.09 2.97 4.52 -2.39 -0.01 2.96 16 29 H 0.01 0.65 7.31 -2.39 -0.02 0.63 16 30 H -0.02 -0.93 6.20 -2.38 -0.01 -0.95 16 31 H 0.26 15.65 8.31 -92.71 -0.77 14.88 16 32 H 0.09 1.98 8.14 -2.38 -0.02 1.96 16 33 H 0.09 2.22 7.70 -2.39 -0.02 2.20 16 34 H 0.09 2.00 5.91 -2.39 -0.01 1.98 16 35 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.14 2.62 8.06 -2.91 -0.02 2.59 16 37 H 0.41 4.65 8.84 -92.71 -0.82 3.83 16 38 H 0.41 5.26 8.84 -92.71 -0.82 4.44 16 39 H 0.13 3.26 8.06 -2.91 -0.02 3.24 16 40 H 0.10 3.61 7.95 -2.91 -0.02 3.58 16 Total: -1.00 -69.45 303.96 0.17 -69.28 By element: Atomic # 1 Polarization: 19.65 SS G_CDS: -0.62 Total: 19.03 kcal Atomic # 6 Polarization: -39.22 SS G_CDS: 3.07 Total: -36.15 kcal Atomic # 7 Polarization: -95.85 SS G_CDS: -4.16 Total: -100.02 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 1.88 Total: 47.85 kcal Total: -69.45 0.17 -69.28 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000094090482.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.451 kcal (2) G-P(sol) polarization free energy of solvation -69.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.004 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.282 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds