Wall clock time and date at job start Mon Mar 30 2020 07:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86801 * 120.00046 * 2 1 4 4 H 1.48501 * 109.46854 * 270.00388 * 3 2 1 5 5 H 1.48495 * 109.46995 * 30.00420 * 3 2 1 6 6 H 1.48503 * 109.46814 * 150.00460 * 3 2 1 7 7 C 1.37878 * 119.99730 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00306 * 359.97438 * 7 2 1 9 9 C 1.50699 * 119.99902 * 179.97438 * 7 2 1 10 10 H 1.09002 * 109.46959 * 299.99551 * 9 7 2 11 11 N 1.46901 * 109.47121 * 59.99793 * 9 7 2 12 12 C 1.50701 * 109.47269 * 179.97438 * 9 7 2 13 13 C 1.33392 * 125.19540 * 99.99754 * 12 9 7 14 14 C 1.38477 * 114.91140 * 180.02562 * 13 12 9 15 15 Br 1.89102 * 122.54453 * 179.97438 * 14 13 12 16 16 C 1.33431 * 114.90434 * 0.02562 * 14 13 12 17 17 S 1.75878 * 125.19584 * 279.69867 * 12 9 7 18 18 H 0.96999 * 119.99784 * 359.97438 * 1 2 3 19 19 H 1.00898 * 111.00245 * 59.99841 * 11 9 7 20 20 H 1.00904 * 111.00313 * 183.95658 * 11 9 7 21 21 H 1.07993 * 122.54551 * 359.97438 * 13 12 9 22 22 H 1.07998 * 125.20219 * 180.02562 * 16 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5468 1.4401 0.7000 7 6 2.0046 -1.1941 -0.0005 8 1 1.4646 -2.1294 -0.0005 9 6 3.5115 -1.1941 -0.0011 10 1 3.8745 -0.6802 -0.8912 11 7 4.0017 -0.5019 1.1983 12 6 4.0139 -2.6150 -0.0010 13 6 4.4481 -3.2770 -1.0745 14 6 4.8614 -4.5760 -0.8310 15 35 5.5156 -5.7083 -2.1970 16 6 4.7619 -4.9683 0.4404 17 16 4.1240 -3.6511 1.4159 18 1 -0.4850 0.8401 0.0004 19 1 3.6785 -0.9595 2.0374 20 1 5.0083 -0.4318 1.1894 21 1 4.4746 -2.8338 -2.0590 22 1 5.0368 -5.9435 0.8144 RHF calculation, no. of doubly occupied orbitals= 33 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095660560.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:14:47 Heat of formation + Delta-G solvation = 18.721964 kcal Electronic energy + Delta-G solvation = -10283.167101 eV Core-core repulsion = 8203.435848 eV Total energy + Delta-G solvation = -2079.731252 eV No. of doubly occupied orbitals = 33 Molecular weight (most abundant/longest-lived isotopes) = 260.952 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -39.16245 -36.55801 -33.95789 -31.96891 -29.91686 -28.16375 -25.12442 -22.51683 -20.20892 -18.89714 -18.20640 -16.67281 -16.58734 -15.84457 -14.86979 -14.48429 -14.41928 -13.92789 -13.75426 -13.01183 -12.76097 -12.47810 -12.15015 -11.72464 -11.61383 -11.39010 -11.21427 -10.76135 -9.60979 -9.36412 -9.01588 -8.24822 -6.39948 -0.05551 0.19192 0.77452 1.36803 1.52614 1.53583 1.60460 1.95154 2.60512 3.13755 3.91718 4.12880 4.19273 4.49323 4.78006 4.96333 5.19983 5.28624 5.48633 6.09595 6.39635 6.72697 6.94111 7.38065 8.88063 Molecular weight = 260.95amu Principal moments of inertia in cm(-1) A = 0.040915 B = 0.006415 C = 0.006085 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 684.177433 B = 4364.050960 C = 4600.131726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.948 5.948 2 C 0.028 3.972 3 Si 0.928 3.072 4 H -0.300 1.300 5 H -0.314 1.314 6 H -0.153 1.153 7 C -0.521 4.521 8 H 0.027 0.973 9 C 0.256 3.744 10 H 0.057 0.943 11 N -0.833 5.833 12 C -0.169 4.169 13 C -0.153 4.153 14 C -0.103 4.103 15 Br -0.027 7.027 16 C -0.197 4.197 17 S 0.151 5.849 18 H 0.263 0.737 19 H 0.335 0.665 20 H 0.335 0.665 21 H 0.142 0.858 22 H 0.196 0.804 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.048 -10.641 -0.291 18.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.587 5.587 2 C -0.171 4.171 3 Si 0.753 3.247 4 H -0.228 1.228 5 H -0.243 1.243 6 H -0.074 1.074 7 C -0.559 4.559 8 H 0.045 0.955 9 C 0.144 3.856 10 H 0.075 0.925 11 N -0.364 5.364 12 C -0.290 4.290 13 C -0.183 4.183 14 C -0.196 4.196 15 Br 0.056 6.944 16 C -0.335 4.335 17 S 0.414 5.586 18 H 0.072 0.928 19 H 0.149 0.851 20 H 0.149 0.851 21 H 0.159 0.841 22 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges 14.420 -10.163 0.503 17.648 hybrid contribution 0.014 -0.203 -1.298 1.314 sum 14.434 -10.366 -0.795 17.788 Atomic orbital electron populations 1.70098 1.08930 1.28225 1.51452 1.25900 0.95140 1.03937 0.92104 0.86322 0.84660 0.75961 0.77751 1.22792 1.24277 1.07368 1.20911 0.89747 0.92735 1.52522 0.95511 1.17892 0.93137 0.82831 0.91743 0.92521 1.59714 1.14900 1.57074 1.04692 1.26024 1.03176 1.03134 0.96652 1.19975 1.04464 0.93526 1.00299 1.20718 1.09263 0.95670 0.93949 1.96614 1.86027 1.62988 1.48729 1.25913 1.07300 1.04832 0.95501 1.84068 1.61115 1.03278 1.10155 0.92811 0.85136 0.85109 0.84074 0.78653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.35 13.96 21.45 0.30 -59.05 14 2 C 0.03 1.62 5.47 84.65 0.46 2.09 14 3 Si 0.93 43.27 26.94 68.60 1.85 45.11 14 4 H -0.30 -14.15 7.11 99.48 0.71 -13.44 14 5 H -0.31 -15.24 7.11 99.48 0.71 -14.54 14 6 H -0.15 -6.17 5.17 99.48 0.51 -5.66 14 7 C -0.52 -28.58 9.29 25.60 0.24 -28.35 14 8 H 0.03 1.67 7.98 -2.91 -0.02 1.64 14 9 C 0.26 10.92 2.55 43.42 0.11 11.03 14 10 H 0.06 2.45 7.55 -2.39 -0.02 2.43 14 11 N -0.83 -30.62 5.75 -174.95 -1.01 -31.62 14 12 C -0.17 -6.32 5.38 24.59 0.13 -6.18 14 13 C -0.15 -5.31 9.90 21.23 0.21 -5.10 14 14 C -0.10 -3.10 6.17 21.24 0.13 -2.97 14 15 Br -0.03 -0.68 33.87 -20.37 -0.69 -1.37 14 16 C -0.20 -5.35 11.05 66.73 0.74 -4.61 14 17 S 0.15 4.63 22.53 -56.49 -1.27 3.36 14 18 H 0.26 15.63 8.31 -92.71 -0.77 14.86 14 19 H 0.33 12.08 8.31 -89.70 -0.75 11.33 14 20 H 0.34 10.07 9.06 -89.69 -0.81 9.26 14 21 H 0.14 4.83 8.06 -2.91 -0.02 4.81 14 22 H 0.20 4.01 8.06 -2.91 -0.02 3.99 14 Total: -1.00 -63.69 229.56 0.71 -62.98 By element: Atomic # 1 Polarization: 15.18 SS G_CDS: -0.49 Total: 14.69 kcal Atomic # 6 Polarization: -36.12 SS G_CDS: 2.02 Total: -34.10 kcal Atomic # 7 Polarization: -89.97 SS G_CDS: -0.71 Total: -90.68 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.85 Total: 45.11 kcal Atomic # 16 Polarization: 4.63 SS G_CDS: -1.27 Total: 3.36 kcal Atomic # 35 Polarization: -0.68 SS G_CDS: -0.69 Total: -1.37 kcal Total: -63.69 0.71 -62.98 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095660560.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.700 kcal (2) G-P(sol) polarization free energy of solvation -63.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.010 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.712 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.978 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.722 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds